Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34634 * 116.99994 * 2 1 4 4 O 1.21512 * 120.00023 * 359.97438 * 3 2 1 5 5 N 1.34768 * 120.00106 * 179.97438 * 3 2 1 6 6 C 1.47069 * 136.05825 * 359.63144 * 5 3 2 7 7 C 1.53752 * 87.88990 * 152.96186 * 6 5 3 8 8 N 1.46501 * 114.39786 * 272.67466 * 7 6 5 9 9 C 1.34780 * 120.00337 * 248.59007 * 8 7 6 10 10 O 1.21345 * 119.99499 * 359.97438 * 9 8 7 11 11 C 1.49443 * 119.99912 * 179.97438 * 9 8 7 12 12 O 1.21351 * 120.00113 * 6.38959 * 11 9 8 13 13 N 1.34779 * 119.99569 * 186.39118 * 11 9 8 14 14 C 1.46928 * 120.63361 * 7.08316 * 13 11 9 15 15 C 1.53194 * 108.77075 * 233.58542 * 14 13 11 16 16 C 1.53040 * 109.31150 * 305.35983 * 15 14 13 17 17 C 1.53037 * 109.54074 * 61.36670 * 16 15 14 18 18 H 1.09006 * 109.49450 * 58.58552 * 17 16 15 19 19 C 1.50696 * 109.50114 * 178.68176 * 17 16 15 20 20 H 1.08004 * 119.99733 * 34.61772 * 19 17 16 21 21 C 1.37876 * 120.00175 * 214.61945 * 19 17 16 22 22 N 1.31516 * 119.99935 * 175.11204 * 21 19 17 23 23 Si 1.86799 * 120.00179 * 355.11150 * 21 19 17 24 24 H 1.48505 * 109.46937 * 95.26189 * 23 21 19 25 25 H 1.48500 * 109.47223 * 215.26246 * 23 21 19 26 26 H 1.48504 * 109.46933 * 335.26295 * 23 21 19 27 27 C 1.46926 * 120.62751 * 186.79527 * 13 11 9 28 28 C 1.47075 * 136.05890 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.46919 * 60.00514 * 1 2 3 30 30 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47491 * 300.00001 * 1 2 3 32 32 H 1.08998 * 113.46766 * 267.69508 * 6 5 3 33 33 H 1.08999 * 113.46970 * 38.12880 * 6 5 3 34 34 H 1.09001 * 114.08916 * 139.77667 * 7 6 5 35 35 H 0.97001 * 119.99513 * 68.58169 * 8 7 6 36 36 H 1.09004 * 109.58060 * 353.36846 * 14 13 11 37 37 H 1.09000 * 109.58955 * 113.65401 * 14 13 11 38 38 H 1.09000 * 109.50054 * 65.31370 * 15 14 13 39 39 H 1.09001 * 109.49254 * 185.41033 * 15 14 13 40 40 H 1.08999 * 109.46233 * 181.39100 * 16 15 14 41 41 H 1.09010 * 109.46107 * 301.36044 * 16 15 14 42 42 H 0.96997 * 120.00191 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.59003 * 246.20486 * 27 13 11 44 44 H 1.08998 * 109.59296 * 6.62994 * 27 13 11 45 45 H 1.09003 * 113.46676 * 321.86689 * 28 5 3 46 46 H 1.09003 * 113.46604 * 92.30449 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.5201 0.3065 0.0077 7 6 5.3746 1.3727 -0.6972 8 7 5.2665 1.3661 -2.1582 9 6 6.3187 0.9866 -2.9102 10 8 7.3557 0.6509 -2.3770 11 6 6.2081 0.9794 -4.4005 12 8 5.2147 1.4237 -4.9374 13 7 7.2118 0.4793 -5.1482 14 6 8.3496 -0.2013 -4.5151 15 6 9.6472 0.4534 -4.9994 16 6 9.6797 0.4413 -6.5294 17 6 8.4990 1.2492 -7.0729 18 1 8.5534 2.2708 -6.6966 19 6 8.5502 1.2638 -8.5789 20 1 8.9123 0.3991 -9.1153 21 6 8.1347 2.3809 -9.2720 22 7 8.2687 2.4311 -10.5794 23 14 7.3816 3.8231 -8.3543 24 1 8.4330 4.8328 -8.0706 25 1 6.3166 4.4379 -9.1867 26 1 6.7966 3.3450 -7.0758 27 6 7.1857 0.5988 -6.6123 28 6 4.4133 2.3448 0.0002 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.8736 0.0590 1.0087 33 1 4.3331 -0.5762 -0.6039 34 1 6.4027 1.4269 -0.3392 35 1 4.4375 1.6347 -2.5843 36 1 8.2750 -0.1069 -3.4317 37 1 8.3446 -1.2557 -4.7913 38 1 9.6908 1.4824 -4.6427 39 1 10.5014 -0.1026 -4.6130 40 1 10.6132 0.8843 -6.8764 41 1 9.6110 -0.5865 -6.8861 42 1 7.9768 3.2172 -11.0670 43 1 7.0891 -0.3912 -7.0581 44 1 6.3429 1.2210 -6.9133 45 1 4.1352 3.1985 -0.6178 46 1 4.7386 2.6351 0.9993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330984274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -81.327462 kcal Electronic energy + Delta-G solvation = -30031.844486 eV Core-core repulsion = 25731.408077 eV Total energy + Delta-G solvation = -4300.436409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47145 -40.62346 -39.55113 -38.28911 -37.15374 -36.50790 -34.25930 -33.20034 -31.88888 -30.49641 -30.24116 -27.62365 -26.62974 -26.23959 -25.19534 -23.69244 -22.08122 -21.85535 -20.55013 -20.35778 -18.97178 -18.54071 -17.67742 -17.43285 -17.24720 -16.86014 -16.70191 -16.05746 -15.81708 -15.15852 -14.98486 -14.75844 -14.42559 -14.24019 -14.05200 -13.95951 -13.58638 -13.34312 -13.27708 -13.14583 -12.60419 -12.56921 -12.49558 -12.34080 -12.21004 -11.74194 -11.61484 -11.19062 -11.14038 -10.93432 -10.75689 -10.66257 -10.45646 -10.14351 -9.74363 -9.64905 -9.57628 -9.39630 -9.23926 -8.77310 -8.66782 -8.17170 -6.15071 -4.15861 1.41448 1.52783 2.24557 2.43870 3.22865 3.27965 3.36216 3.38443 3.45634 3.57201 3.79537 4.24239 4.35770 4.38859 4.68488 4.71341 4.78637 4.86749 4.92152 4.98853 5.10677 5.14462 5.16532 5.19495 5.44799 5.50693 5.68787 5.83000 5.90775 6.00188 6.18203 6.20320 6.37851 6.47029 6.52311 6.61070 6.75778 6.81439 6.89368 7.13903 7.23227 7.31069 7.58608 7.69187 7.74646 7.84393 8.17591 8.44995 8.90497 9.48023 10.97304 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.002702 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.913753 B =10360.703895 C =11209.200908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.368 6.368 3 C 0.677 3.323 4 O -0.568 6.568 5 N -0.638 5.638 6 C 0.091 3.909 7 C 0.106 3.894 8 N -0.685 5.685 9 C 0.521 3.479 10 O -0.505 6.505 11 C 0.494 3.506 12 O -0.530 6.530 13 N -0.567 5.567 14 C 0.051 3.949 15 C -0.131 4.131 16 C -0.107 4.107 17 C 0.008 3.992 18 H 0.035 0.965 19 C -0.513 4.513 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.894 5.894 23 Si 0.870 3.130 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.257 1.257 27 C 0.106 3.894 28 C 0.121 3.879 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.417 0.583 36 H 0.145 0.855 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.265 0.735 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -5.764 25.462 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.282 6.282 3 C 0.434 3.566 4 O -0.457 6.457 5 N -0.381 5.381 6 C -0.033 4.033 7 C -0.001 4.001 8 N -0.338 5.338 9 C 0.304 3.696 10 O -0.382 6.382 11 C 0.276 3.724 12 O -0.408 6.408 13 N -0.299 5.299 14 C -0.070 4.070 15 C -0.169 4.169 16 C -0.145 4.145 17 C -0.012 4.012 18 H 0.053 0.947 19 C -0.551 4.551 20 H 0.094 0.906 21 C -0.128 4.128 22 N -0.531 5.531 23 Si 0.697 3.303 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.181 1.181 27 C -0.014 4.014 28 C -0.001 4.001 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.254 0.746 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.783 -5.395 25.334 27.046 hybrid contribution -1.064 0.934 0.065 1.417 sum -8.846 -4.462 25.399 27.263 Atomic orbital electron populations 1.23242 0.74058 1.03658 1.02856 1.86256 1.24280 1.30723 1.86921 1.17330 0.81053 0.82280 0.75973 1.91031 1.63365 1.35201 1.56060 1.48165 1.00744 1.12637 1.76591 1.23705 0.82860 0.95129 1.01650 1.22327 1.00950 0.96298 0.80533 1.45401 1.16535 1.66668 1.05197 1.20689 0.83282 0.76662 0.88990 1.90327 1.27759 1.46412 1.73652 1.19764 0.84508 0.81255 0.86920 1.90762 1.29732 1.47114 1.73150 1.48478 1.19859 1.52673 1.08875 1.23138 0.85151 0.95323 1.03410 1.21914 0.96225 1.00705 0.98066 1.21603 1.00048 1.00500 0.92313 1.19552 0.89763 0.95058 0.96781 0.94688 1.20897 1.43677 1.02292 0.88281 0.90586 1.25084 0.94711 0.98246 0.94736 1.69900 1.46606 1.29788 1.06789 0.86948 0.79572 0.82893 0.80870 1.20431 1.21250 1.18128 1.22844 1.02572 1.01753 0.74214 1.23439 0.82509 0.92309 1.01853 0.91629 0.87784 0.91831 0.87786 0.89258 0.84266 0.74552 0.83834 0.92171 0.92282 0.91718 0.92176 0.92796 0.92497 0.91400 0.89813 0.88939 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.78 10.59 -40.31 -0.43 -4.21 16 3 C 0.68 7.95 8.96 54.05 0.48 8.44 16 4 O -0.57 -8.38 16.91 -19.28 -0.33 -8.71 16 5 N -0.64 -5.64 3.69 -190.93 -0.70 -6.35 16 6 C 0.09 0.56 8.48 -8.37 -0.07 0.49 16 7 C 0.11 0.71 4.61 -67.69 -0.31 0.40 16 8 N -0.69 -7.09 5.39 -53.93 -0.29 -7.38 16 9 C 0.52 6.98 7.78 -11.59 -0.09 6.89 16 10 O -0.51 -6.80 12.70 5.50 0.07 -6.73 16 11 C 0.49 8.63 7.74 -11.59 -0.09 8.54 16 12 O -0.53 -10.66 15.94 5.50 0.09 -10.57 16 13 N -0.57 -10.29 2.97 -173.01 -0.51 -10.80 16 14 C 0.05 0.77 6.27 -3.71 -0.02 0.75 16 15 C -0.13 -2.05 6.08 -26.61 -0.16 -2.22 16 16 C -0.11 -2.03 5.15 -26.69 -0.14 -2.17 16 17 C 0.01 0.19 1.79 -91.43 -0.16 0.02 16 18 H 0.03 0.84 5.61 -51.93 -0.29 0.54 16 19 C -0.51 -13.89 8.86 -34.44 -0.31 -14.20 16 20 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 21 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 22 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 23 Si 0.87 21.75 26.63 -169.99 -4.53 17.23 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.26 -6.38 5.97 56.52 0.34 -6.04 16 27 C 0.11 2.26 5.52 -3.49 -0.02 2.24 16 28 C 0.12 0.77 8.38 -8.51 -0.07 0.70 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.14 0.78 7.45 -51.93 -0.39 0.39 16 35 H 0.42 4.62 8.25 -40.82 -0.34 4.29 16 36 H 0.15 2.06 3.78 -56.76 -0.21 1.84 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.08 1.97 5.94 -51.93 -0.31 1.66 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -35.16 377.82 -6.81 -41.96 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.66 Total: 2.58 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 0.01 Total: 13.40 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.73 Total: -50.64 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.60 Total: -30.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.53 Total: 17.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.16 -6.81 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330984274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.363 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds