Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99837 * 2 1 4 4 O 1.20817 * 120.00203 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99727 * 180.02562 * 3 2 1 6 6 O 1.42902 * 110.90592 * 37.41176 * 5 3 2 7 7 C 1.55141 * 110.99350 * 273.54284 * 5 3 2 8 8 C 1.54312 * 103.02368 * 206.25607 * 7 5 3 9 9 N 1.47455 * 107.23123 * 22.28521 * 8 7 5 10 10 C 1.46891 * 111.00160 * 123.25849 * 9 8 7 11 11 C 1.50702 * 109.47528 * 69.87091 * 10 9 8 12 12 O 1.21287 * 119.99578 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00755 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00646 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47443 * 270.00265 * 14 13 11 16 16 H 1.08001 * 120.00056 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00480 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00447 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99662 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46974 * 90.00094 * 19 17 15 21 21 H 1.48500 * 109.47191 * 210.00006 * 19 17 15 22 22 H 1.48501 * 109.47289 * 330.00624 * 19 17 15 23 23 C 1.46505 * 119.99455 * 0.02562 * 13 11 10 24 24 C 1.52997 * 109.47212 * 90.00023 * 23 13 11 25 25 C 1.47202 * 109.47534 * 179.97438 * 24 23 13 26 26 N 9.79447 * 107.69780 * 16.95599 * 2 1 3 27 27 C 1.47841 * 108.56655 * 0.98640 * 9 8 7 28 28 H 1.08996 * 109.46845 * 59.99961 * 1 2 3 29 29 H 1.08992 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46843 * 300.00529 * 1 2 3 31 31 H 0.96705 * 113.99941 * 297.58790 * 6 5 3 32 32 H 1.09002 * 110.70422 * 87.86723 * 7 5 3 33 33 H 1.09004 * 110.70423 * 324.64131 * 7 5 3 34 34 H 1.08992 * 109.88986 * 262.87942 * 8 7 5 35 35 H 1.08994 * 110.02552 * 141.76156 * 8 7 5 36 36 H 1.09004 * 109.47465 * 309.87432 * 10 9 8 37 37 H 1.09002 * 109.47247 * 189.87112 * 10 9 8 38 38 H 1.09006 * 109.46911 * 30.00087 * 14 13 11 39 39 H 1.08996 * 109.47170 * 149.99599 * 14 13 11 40 40 H 0.97003 * 120.00287 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.47068 * 210.00083 * 23 13 11 42 42 H 1.09001 * 109.47372 * 330.00170 * 23 13 11 43 43 H 1.09002 * 109.47153 * 300.00008 * 24 23 13 44 44 H 1.08998 * 109.47533 * 59.99637 * 24 23 13 45 45 H 1.09004 * 110.37220 * 94.73359 * 27 9 8 46 46 H 1.09001 * 110.37660 * 217.07911 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 4.1307 0.2428 -0.8120 7 6 4.1266 1.2143 1.4448 8 6 5.4729 1.9594 1.3275 9 7 5.3888 2.8287 0.1394 10 6 5.6458 4.2308 0.4938 11 6 7.0986 4.3991 0.8572 12 8 7.8465 3.4448 0.8237 13 7 7.5672 5.6100 1.2184 14 6 8.9794 5.7734 1.5721 15 6 9.1567 5.5433 3.0508 16 1 8.3028 5.3001 3.6657 17 6 10.4091 5.6433 3.6188 18 7 10.5639 5.4420 4.9091 19 14 11.8862 6.0632 2.5552 20 1 12.0612 7.5372 2.5108 21 1 13.1040 5.4373 3.1299 22 1 11.6676 5.5492 1.1793 23 6 6.6640 6.7628 1.2582 24 6 6.0391 6.8732 2.6504 25 6 5.1319 8.0318 2.6907 26 7 4.4295 8.9253 2.7212 27 6 4.0486 2.6719 -0.4648 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9355 -0.6522 -0.5021 32 1 4.2837 0.1810 1.7543 33 1 3.4608 1.7283 2.1381 34 1 6.2843 1.2420 1.2054 35 1 5.6436 2.5641 2.2180 36 1 5.0239 4.5106 1.3442 37 1 5.4076 4.8701 -0.3564 38 1 9.5788 5.0513 1.0176 39 1 9.3025 6.7834 1.3202 40 1 11.4451 5.5119 5.3087 41 1 7.2246 7.6714 1.0385 42 1 5.8765 6.6333 0.5158 43 1 5.4784 5.9645 2.8701 44 1 6.8264 7.0027 3.3929 45 1 3.3747 3.4467 -0.0993 46 1 4.1159 2.7081 -1.5521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414034802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = -114.068665 kcal Electronic energy + Delta-G solvation = -30180.237097 eV Core-core repulsion = 25878.380923 eV Total energy + Delta-G solvation = -4301.856174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28990 -39.78257 -38.68413 -36.92732 -36.78189 -36.01452 -35.17496 -32.80715 -31.64983 -30.89458 -29.33503 -28.78142 -28.03620 -26.30200 -23.93803 -23.36936 -22.48992 -21.23910 -20.63897 -18.92055 -18.53897 -17.62303 -17.52899 -16.92005 -16.67436 -16.62893 -16.30754 -15.94080 -15.46535 -15.05004 -14.64013 -14.54500 -14.06714 -13.95429 -13.82074 -13.61724 -13.48837 -13.29815 -12.96914 -12.70221 -12.60126 -12.54874 -12.40819 -12.30018 -12.13006 -11.95749 -11.86357 -11.66621 -11.58748 -11.29470 -11.25567 -11.10078 -10.93791 -10.78361 -10.52156 -10.25497 -10.15405 -9.57960 -9.10705 -8.64375 -8.31639 -7.89714 -6.14783 -4.14228 1.64918 2.13353 2.81033 2.92178 3.24513 3.26804 3.32428 3.37781 3.44688 3.67202 3.84801 4.04307 4.17461 4.32664 4.35847 4.38764 4.67790 4.76066 4.88054 4.94289 5.01967 5.08526 5.10331 5.16875 5.20803 5.26921 5.36205 5.39623 5.43636 5.50675 5.56582 5.74771 5.87354 5.89420 6.17613 6.19212 6.54881 6.78875 6.83814 6.95550 7.10615 7.22259 7.28477 7.54557 7.68150 8.10037 8.38739 8.84857 8.90518 9.45980 10.97844 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.002961 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.932938 B = 9455.235084 C =10727.611269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.449 3.551 4 O -0.496 6.496 5 C 0.138 3.862 6 O -0.519 6.519 7 C -0.163 4.163 8 C 0.058 3.942 9 N -0.500 5.500 10 C 0.025 3.975 11 C 0.512 3.488 12 O -0.510 6.510 13 N -0.596 5.596 14 C 0.215 3.785 15 C -0.531 4.531 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.872 3.128 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.263 1.263 23 C 0.123 3.877 24 C -0.054 4.054 25 C 0.219 3.781 26 N -0.452 5.452 27 C 0.067 3.933 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.386 0.614 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.044 0.956 39 H 0.027 0.973 40 H 0.265 0.735 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.078 0.922 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.543 -9.230 -9.393 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.290 3.710 4 O -0.383 6.383 5 C 0.094 3.906 6 O -0.325 6.325 7 C -0.201 4.201 8 C -0.069 4.069 9 N -0.224 5.224 10 C -0.106 4.106 11 C 0.297 3.703 12 O -0.383 6.383 13 N -0.329 5.329 14 C 0.094 3.906 15 C -0.569 4.569 16 H 0.096 0.904 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.699 3.301 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.187 1.187 23 C -0.003 4.003 24 C -0.095 4.095 25 C -0.099 4.099 26 N -0.130 5.130 27 C -0.061 4.061 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.152 0.848 45 H 0.097 0.903 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.633 -7.767 -9.923 21.673 hybrid contribution -0.062 -0.219 0.718 0.753 sum -17.695 -7.987 -9.206 21.486 Atomic orbital electron populations 1.23319 0.75909 1.03954 1.02743 1.86485 1.23876 1.33263 1.83730 1.24532 0.92406 0.81780 0.72239 1.90686 1.66741 1.36287 1.44586 1.22122 0.82817 0.92175 0.93485 1.86686 1.75922 1.17210 1.52647 1.23570 0.98875 1.03761 0.93928 1.22780 0.95688 0.96541 0.91888 1.63334 1.26104 1.05528 1.27475 1.22378 0.95804 0.90872 1.01535 1.20087 0.89107 0.83097 0.77964 1.90703 1.58235 1.38255 1.51157 1.47902 1.11317 1.06985 1.66718 1.19736 0.76635 0.96918 0.97265 1.21307 0.95628 1.48799 0.91215 0.90434 1.24834 0.98627 0.94566 0.94789 1.69876 1.23652 1.49277 1.10550 0.86911 0.82905 0.78759 0.81573 1.20170 1.21058 1.18707 1.21285 0.93777 0.91248 0.94018 1.20003 0.96549 0.90453 1.02506 1.29313 0.93397 0.94375 0.92831 1.81228 1.11147 1.11575 1.09043 1.23010 0.89739 0.91225 1.02088 0.91695 0.87825 0.91739 0.76516 0.88719 0.90012 0.88629 0.91535 0.91807 0.88080 0.93793 0.95484 0.92517 0.89422 0.90755 0.87883 0.84756 0.90350 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.06 10.21 -43.74 -0.45 -3.51 16 3 C 0.45 4.67 6.98 36.00 0.25 4.92 16 4 O -0.50 -6.28 15.49 -18.74 -0.29 -6.57 16 5 C 0.14 1.40 1.26 -89.63 -0.11 1.29 16 6 O -0.52 -5.17 13.10 -46.09 -0.60 -5.77 16 7 C -0.16 -1.55 6.13 -24.91 -0.15 -1.70 16 8 C 0.06 0.75 5.65 -2.83 -0.02 0.73 16 9 N -0.50 -6.69 4.85 -232.69 -1.13 -7.82 16 10 C 0.03 0.33 3.58 -4.98 -0.02 0.31 16 11 C 0.51 8.96 7.32 -10.99 -0.08 8.88 16 12 O -0.51 -11.24 15.13 5.55 0.08 -11.16 16 13 N -0.60 -10.23 2.46 -175.06 -0.43 -10.66 16 14 C 0.21 4.62 4.27 -5.20 -0.02 4.60 16 15 C -0.53 -13.49 9.47 -34.44 -0.33 -13.81 16 16 H 0.08 2.10 7.66 -52.49 -0.40 1.69 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -25.88 13.96 55.43 0.77 -25.10 16 19 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 23 C 0.12 1.54 5.21 -4.04 -0.02 1.52 16 24 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 25 C 0.22 2.91 15.44 -20.73 -0.32 2.59 16 26 N -0.45 -7.09 18.54 42.19 0.78 -6.30 16 27 C 0.07 0.76 5.71 -2.30 -0.01 0.74 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.39 2.33 8.86 45.56 0.40 2.73 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.74 8.03 -51.93 -0.42 0.32 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 36 H 0.06 0.70 7.01 -51.93 -0.36 0.33 16 37 H 0.10 1.07 7.33 -51.93 -0.38 0.69 16 38 H 0.04 1.05 6.48 -51.93 -0.34 0.72 16 39 H 0.03 0.55 7.32 -51.93 -0.38 0.17 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.09 1.04 7.89 -51.93 -0.41 0.63 16 42 H 0.07 0.71 6.44 -51.93 -0.33 0.38 16 43 H 0.10 1.12 7.22 -51.93 -0.38 0.75 16 44 H 0.13 1.97 7.25 -51.93 -0.38 1.59 16 45 H 0.08 0.84 6.88 -51.93 -0.36 0.49 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -35.08 387.88 -5.94 -41.02 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.81 Total: 1.98 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -0.04 Total: 12.41 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.00 Total: -49.89 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.26 Total: -27.01 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.08 -5.94 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414034802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.050 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds