Wall clock time and date at job start Sat Apr 11 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48503 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47101 * 299.99646 * 3 2 1 6 6 H 1.48494 * 109.47344 * 59.99575 * 3 2 1 7 7 C 1.38820 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99482 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99781 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.90205 * 23.75276 * 10 9 7 12 12 C 1.53783 * 113.61134 * 154.99978 * 10 9 7 13 13 C 1.53783 * 87.07947 * 139.98458 * 12 10 9 14 14 H 1.09004 * 113.61530 * 89.19498 * 13 12 10 15 15 C 1.52997 * 113.61646 * 220.01734 * 13 12 10 16 16 N 1.46498 * 109.47214 * 183.46794 * 15 13 12 17 17 C 1.34780 * 119.99883 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99855 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99910 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47174 * 180.02562 * 19 17 16 21 21 C 1.36209 * 120.66929 * 264.98061 * 20 19 17 22 22 N 1.32574 * 121.87479 * 179.97438 * 21 20 19 23 23 C 1.31263 * 122.77926 * 0.02562 * 22 21 20 24 24 C 1.40391 * 119.88180 * 0.02562 * 23 22 21 25 25 C 1.40386 * 122.08117 * 180.02562 * 24 23 22 26 26 C 1.36173 * 119.51144 * 179.97438 * 25 24 23 27 27 C 1.39377 * 121.09344 * 0.02562 * 26 25 24 28 28 C 1.36215 * 121.02159 * 359.97438 * 27 26 25 29 29 C 1.40236 * 119.47954 * 0.02562 * 28 27 26 30 30 C 1.53783 * 87.17271 * 334.60888 * 13 12 10 31 31 H 0.96999 * 119.99522 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00320 * 0.02562 * 9 7 2 33 33 H 1.08991 * 113.61873 * 25.43707 * 12 10 9 34 34 H 1.08997 * 113.69109 * 254.53703 * 12 10 9 35 35 H 1.09007 * 109.47094 * 63.46756 * 15 13 12 36 36 H 1.09003 * 109.47093 * 303.47433 * 15 13 12 37 37 H 0.96999 * 120.00330 * 0.02562 * 16 15 13 38 38 H 1.09000 * 109.47433 * 60.00727 * 19 17 16 39 39 H 1.08997 * 109.47230 * 300.00389 * 19 17 16 40 40 H 1.07995 * 119.05946 * 0.02562 * 21 20 19 41 41 H 1.08006 * 120.06040 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.24520 * 359.94033 * 25 24 23 43 43 H 1.08002 * 119.45218 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.48802 * 180.27578 * 27 26 25 45 45 H 1.08001 * 120.25367 * 180.02562 * 28 27 26 46 46 H 1.08999 * 113.61808 * 139.93963 * 30 13 12 47 47 H 1.08995 * 113.61571 * 270.84732 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0660 -3.5647 0.4050 12 6 1.2600 -4.8288 0.5961 13 6 1.8478 -5.6976 -0.5284 14 1 2.7977 -6.1646 -0.2681 15 6 0.8448 -6.6852 -1.1279 16 7 1.5179 -7.5189 -2.1270 17 6 0.8263 -8.4670 -2.7899 18 8 -0.3533 -8.6297 -2.5595 19 6 1.5185 -9.3241 -3.8180 20 6 0.5306 -10.2970 -4.4084 21 6 0.4181 -11.5604 -3.9119 22 7 -0.4430 -12.4352 -4.4126 23 6 -1.2427 -12.1518 -5.4141 24 6 -1.2057 -10.8763 -5.9995 25 6 -2.0402 -10.5235 -7.0718 26 6 -1.9608 -9.2707 -7.5996 27 6 -1.0638 -8.3319 -7.0932 28 6 -0.2388 -8.6387 -6.0537 29 6 -0.2925 -9.9193 -5.4847 30 6 2.0010 -4.4034 -1.3447 31 1 -0.4849 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 0.1797 -4.7002 0.5291 34 1 1.5904 -5.1221 1.5925 35 1 0.0320 -6.1349 -1.6019 36 1 0.4421 -7.3188 -0.3376 37 1 2.4613 -7.3890 -2.3110 38 1 2.3318 -9.8742 -3.3445 39 1 1.9204 -8.6903 -4.6084 40 1 1.0478 -11.8575 -3.0864 41 1 -1.9275 -12.8989 -5.7878 42 1 -2.7397 -11.2406 -7.4755 43 1 -2.6036 -9.0002 -8.4242 44 1 -1.0257 -7.3443 -7.5286 45 1 0.4513 -7.9014 -5.6708 46 1 2.9298 -4.3527 -1.9128 47 1 1.1237 -4.1582 -1.9432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479301580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:14 Heat of formation + Delta-G solvation = 19.426518 kcal Electronic energy + Delta-G solvation = -27600.916675 eV Core-core repulsion = 23747.991301 eV Total energy + Delta-G solvation = -3852.925374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00240 -40.74363 -39.73562 -38.25317 -36.07441 -35.13628 -34.99547 -32.27342 -32.13265 -31.32169 -29.68473 -27.87044 -26.45921 -25.79074 -24.87486 -24.49131 -22.87709 -22.29101 -21.38517 -20.43011 -19.05692 -18.91344 -18.57091 -18.06286 -17.51780 -17.09327 -16.57541 -16.51581 -16.03942 -15.72661 -15.55752 -15.31957 -15.17331 -15.06625 -14.75023 -14.45416 -14.36306 -14.30494 -13.67104 -13.41600 -13.24065 -13.09863 -13.08368 -12.93566 -12.87783 -12.68848 -12.63280 -12.16221 -12.06089 -11.97422 -11.60181 -11.55552 -11.21990 -11.07510 -10.84738 -10.72541 -10.46216 -10.06900 -10.02812 -8.98236 -8.97886 -7.95011 -5.23321 -0.61018 -0.05243 0.93116 1.47177 1.47846 1.57918 1.63292 2.06203 2.28857 2.56436 3.11516 3.37089 3.37508 3.58110 3.69914 3.75979 3.77529 3.78887 3.86340 3.93527 3.99092 4.13197 4.23074 4.25938 4.32188 4.35968 4.38946 4.43577 4.55290 4.57809 4.67523 4.78651 4.80215 4.94519 4.97893 4.99087 5.05572 5.09735 5.13826 5.22972 5.37238 5.44505 5.46249 5.49915 5.53601 5.67093 5.73970 5.92452 6.27473 6.58646 6.98904 7.28039 7.32723 8.11275 8.32734 9.28776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.001930 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.173566 B =14506.684370 C =15575.269673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.143 3.857 11 H 0.082 0.918 12 C -0.139 4.139 13 C -0.093 4.093 14 H 0.124 0.876 15 C 0.139 3.861 16 N -0.712 5.712 17 C 0.510 3.490 18 O -0.585 6.585 19 C -0.092 4.092 20 C -0.109 4.109 21 C 0.069 3.931 22 N -0.513 5.513 23 C 0.138 3.862 24 C -0.132 4.132 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.101 4.101 28 C -0.131 4.131 29 C -0.032 4.032 30 C -0.152 4.152 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.419 0.581 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.164 0.836 41 H 0.191 0.809 42 H 0.163 0.837 43 H 0.154 0.846 44 H 0.144 0.856 45 H 0.132 0.868 46 H 0.071 0.929 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -26.040 -15.201 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.179 4.179 13 C -0.112 4.112 14 H 0.142 0.858 15 C 0.015 3.985 16 N -0.364 5.364 17 C 0.298 3.702 18 O -0.465 6.465 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.074 4.074 22 N -0.221 5.221 23 C -0.033 4.033 24 C -0.134 4.134 25 C -0.107 4.107 26 C -0.144 4.144 27 C -0.120 4.120 28 C -0.149 4.149 29 C -0.037 4.037 30 C -0.192 4.192 31 H 0.058 0.942 32 H 0.203 0.797 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.256 0.744 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.181 0.819 41 H 0.208 0.792 42 H 0.181 0.819 43 H 0.172 0.828 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.090 0.910 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.293 -26.802 -14.522 30.661 hybrid contribution -0.041 2.250 -0.172 2.257 sum 3.252 -24.552 -14.695 28.798 Atomic orbital electron populations 1.69837 1.06750 1.25908 1.59902 1.25619 0.96385 1.01315 1.04081 0.85066 0.78398 0.79798 0.76476 1.18653 1.22283 1.22306 1.19779 0.91640 0.85320 1.40391 0.90150 1.42654 1.05342 1.01312 1.87483 1.22003 0.95608 0.83763 0.95298 0.90000 1.23336 0.99798 0.96151 0.98594 1.22466 0.99440 0.92945 0.96379 0.85760 1.21167 0.94876 0.91914 0.90529 1.45876 1.14575 1.35387 1.40571 1.21014 0.86795 0.80486 0.81948 1.90736 1.18148 1.70386 1.67244 1.20652 0.97630 0.96826 0.98069 1.20221 0.98568 0.96046 0.96313 1.22312 0.96451 0.89761 0.98843 1.67424 1.06021 1.36681 1.11936 1.23683 0.94972 0.94251 0.90370 1.19331 0.98882 0.95781 0.99452 1.21364 0.97552 0.97836 0.93979 1.21316 0.98807 0.93345 1.00924 1.21372 0.94518 1.00750 0.95377 1.21129 1.01234 0.95165 0.97374 1.18300 0.95371 0.94777 0.95243 1.23729 1.01090 0.95978 0.98437 0.94154 0.79749 0.91835 0.90361 0.94018 0.92094 0.74405 0.83983 0.85403 0.81851 0.79202 0.81939 0.82833 0.83820 0.85028 0.91020 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 3 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.12 9.97 84.04 0.84 -12.28 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.73 -36.48 5.40 -320.16 -1.73 -38.21 16 10 C 0.14 5.25 4.48 45.58 0.20 5.45 16 11 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 12 C -0.14 -4.18 7.40 31.12 0.23 -3.95 16 13 C -0.09 -2.14 3.75 -10.27 -0.04 -2.18 16 14 H 0.12 2.09 8.14 -2.38 -0.02 2.08 16 15 C 0.14 3.36 5.50 86.38 0.47 3.83 16 16 N -0.71 -13.04 5.56 -463.06 -2.57 -15.61 16 17 C 0.51 11.24 7.82 87.65 0.69 11.93 16 18 O -0.59 -19.40 16.03 -3.04 -0.05 -19.45 16 19 C -0.09 -1.30 5.31 29.10 0.15 -1.14 16 20 C -0.11 -2.23 4.40 -19.75 -0.09 -2.31 16 21 C 0.07 1.47 10.72 84.11 0.90 2.37 16 22 N -0.51 -11.70 10.30 -195.55 -2.01 -13.71 16 23 C 0.14 2.60 11.05 85.30 0.94 3.54 16 24 C -0.13 -2.60 5.74 -21.31 -0.12 -2.73 16 25 C -0.09 -1.25 9.81 22.31 0.22 -1.03 16 26 C -0.13 -1.72 9.94 22.06 0.22 -1.50 16 27 C -0.10 -1.64 9.95 22.07 0.22 -1.42 16 28 C -0.13 -2.56 9.33 22.28 0.21 -2.36 16 29 C -0.03 -0.70 5.75 -21.29 -0.12 -0.82 16 30 C -0.15 -4.58 7.45 31.18 0.23 -4.35 16 31 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.37 20.28 7.92 -92.71 -0.73 19.55 16 33 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.25 7.88 -2.38 -0.02 1.23 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.42 4.65 8.47 -92.71 -0.79 3.86 16 38 H 0.14 1.01 8.06 -2.39 -0.02 0.99 16 39 H 0.13 1.24 6.83 -2.39 -0.02 1.22 16 40 H 0.16 2.70 8.05 -2.91 -0.02 2.68 16 41 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.13 2.28 6.64 -2.91 -0.02 2.26 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.05 1.90 7.92 -2.39 -0.02 1.88 16 Total: -1.00 -79.81 393.97 1.05 -78.76 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.52 Total: 33.36 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 5.63 Total: -13.21 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.03 Total: -127.40 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.81 1.05 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479301580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.188 kcal (2) G-P(sol) polarization free energy of solvation -79.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds