Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47024 * 269.99872 * 3 2 1 5 5 H 1.48498 * 109.47029 * 29.99774 * 3 2 1 6 6 H 1.48501 * 109.47184 * 149.99877 * 3 2 1 7 7 C 1.38807 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99734 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.85344 * 336.20370 * 10 9 7 12 12 C 1.53784 * 113.68520 * 107.46317 * 10 9 7 13 13 C 1.53784 * 87.08098 * 89.12986 * 12 10 9 14 14 H 1.08997 * 113.68881 * 270.87480 * 13 12 10 15 15 C 1.52999 * 113.61745 * 139.98006 * 13 12 10 16 16 N 1.46497 * 109.46992 * 87.50263 * 15 13 12 17 17 C 1.34777 * 119.99525 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 C 1.50703 * 109.47148 * 180.28037 * 19 17 16 21 21 C 1.36210 * 120.66379 * 265.00091 * 20 19 17 22 22 N 1.32574 * 121.87293 * 179.97438 * 21 20 19 23 23 C 1.31269 * 122.78010 * 0.02562 * 22 21 20 24 24 C 1.40395 * 119.87898 * 0.02562 * 23 22 21 25 25 C 1.40384 * 122.08038 * 180.02562 * 24 23 22 26 26 C 1.36176 * 119.50925 * 179.23411 * 25 24 23 27 27 C 1.39379 * 121.09323 * 0.71842 * 26 25 24 28 28 C 1.36214 * 121.02000 * 359.53308 * 27 26 25 29 29 C 1.40237 * 119.48299 * 359.97438 * 28 27 26 30 30 C 1.53775 * 113.61477 * 204.99569 * 10 9 7 31 31 H 0.97001 * 120.00227 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99670 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61943 * 334.58239 * 12 10 9 34 34 H 1.09002 * 113.61810 * 203.67323 * 12 10 9 35 35 H 1.08995 * 109.46838 * 327.50151 * 15 13 12 36 36 H 1.09001 * 109.46617 * 207.50486 * 15 13 12 37 37 H 0.97000 * 120.00580 * 0.02562 * 16 15 13 38 38 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 39 39 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 40 40 H 1.07997 * 119.06470 * 359.97253 * 21 20 19 41 41 H 1.08001 * 120.06264 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.24712 * 359.97438 * 25 24 23 43 43 H 1.08001 * 119.45173 * 180.22817 * 26 25 24 44 44 H 1.07993 * 119.48998 * 179.51041 * 27 26 25 45 45 H 1.07998 * 120.25821 * 179.97438 * 28 27 26 46 46 H 1.08998 * 113.61371 * 156.25044 * 30 10 9 47 47 H 1.09003 * 113.61627 * 25.35868 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0656 -3.5638 -0.4047 12 6 2.0009 -4.4031 1.3439 13 6 0.7221 -5.0805 0.8236 14 1 -0.1894 -4.5271 1.0493 15 6 0.6225 -6.5633 1.1872 16 7 -0.0079 -6.7023 2.5023 17 6 -0.2013 -7.9270 3.0307 18 8 0.1469 -8.9139 2.4178 19 6 -0.8442 -8.0697 4.3863 20 6 -0.9378 -9.5300 4.7466 21 6 -2.0759 -10.2355 4.4970 22 7 -2.1842 -11.5208 4.8035 23 6 -1.2126 -12.2018 5.3651 24 6 0.0034 -11.5676 5.6654 25 6 1.0728 -12.2513 6.2650 26 6 2.2348 -11.5883 6.5191 27 6 2.3756 -10.2372 6.2071 28 6 1.3576 -9.5403 5.6294 29 6 0.1496 -10.1927 5.3438 30 6 1.2602 -4.8288 -0.5948 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 1.8316 -3.7496 2.1997 34 1 2.8303 -5.0940 1.4953 35 1 1.6215 -6.9983 1.2153 36 1 0.0216 -7.0811 0.4396 37 1 -0.2867 -5.9130 2.9924 38 1 -0.2413 -7.5497 5.1309 39 1 -1.8442 -7.6367 4.3616 40 1 -2.9139 -9.7336 4.0363 41 1 -1.3484 -13.2481 5.5957 42 1 0.9789 -13.2985 6.5121 43 1 3.0582 -12.1162 6.9771 44 1 3.3060 -9.7349 6.4270 45 1 1.4800 -8.4936 5.3933 46 1 1.8870 -5.6360 -0.9737 47 1 0.4929 -4.5189 -1.3043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479375341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = 22.030860 kcal Electronic energy + Delta-G solvation = -27666.603224 eV Core-core repulsion = 23813.790783 eV Total energy + Delta-G solvation = -3852.812442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00166 -40.76744 -39.81443 -38.24715 -36.03348 -35.13288 -34.94360 -32.20952 -32.08584 -31.30124 -29.68092 -27.89861 -26.43780 -25.67615 -24.87761 -24.49019 -23.25930 -22.50208 -21.32993 -19.82281 -19.33091 -18.90791 -18.56129 -18.03983 -17.49349 -17.01103 -16.66127 -16.48046 -15.83224 -15.70716 -15.70552 -15.30498 -15.20093 -14.90424 -14.68223 -14.60668 -14.44206 -14.27047 -13.79035 -13.63013 -13.30707 -13.08044 -13.01761 -12.90897 -12.86487 -12.67590 -12.61444 -12.15492 -12.06556 -11.96048 -11.56506 -11.48329 -11.21487 -10.98342 -10.86915 -10.68585 -10.45871 -10.06374 -10.01723 -8.99864 -8.97819 -7.95420 -5.23600 -0.60229 -0.04511 0.94055 1.48311 1.49312 1.57710 1.61890 2.06926 2.29626 2.55735 3.12167 3.37043 3.37412 3.58093 3.70436 3.76726 3.78768 3.79624 3.80820 3.93428 3.98890 4.11830 4.17039 4.23339 4.32560 4.33634 4.38841 4.41094 4.57008 4.67462 4.72562 4.78461 4.80934 4.92420 4.94796 4.99312 5.10251 5.11761 5.14782 5.29289 5.35417 5.47508 5.49354 5.51047 5.55509 5.66395 5.67320 5.93890 6.28288 6.55220 6.99005 7.23833 7.33437 8.10565 8.32873 9.27699 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.001861 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.173311 B =15038.639464 C =15474.854298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.058 0.942 12 C -0.151 4.151 13 C -0.101 4.101 14 H 0.083 0.917 15 C 0.141 3.859 16 N -0.717 5.717 17 C 0.514 3.486 18 O -0.581 6.581 19 C -0.095 4.095 20 C -0.108 4.108 21 C 0.067 3.933 22 N -0.514 5.514 23 C 0.138 3.862 24 C -0.132 4.132 25 C -0.088 4.088 26 C -0.125 4.125 27 C -0.098 4.098 28 C -0.131 4.131 29 C -0.031 4.031 30 C -0.137 4.137 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.192 0.808 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.132 0.868 46 H 0.103 0.897 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -25.002 15.863 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.076 0.924 12 C -0.192 4.192 13 C -0.119 4.119 14 H 0.102 0.898 15 C 0.018 3.982 16 N -0.369 5.369 17 C 0.301 3.699 18 O -0.461 6.461 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.075 4.075 22 N -0.221 5.221 23 C -0.033 4.033 24 C -0.134 4.134 25 C -0.107 4.107 26 C -0.142 4.142 27 C -0.117 4.117 28 C -0.149 4.149 29 C -0.036 4.036 30 C -0.176 4.176 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.177 0.823 41 H 0.209 0.791 42 H 0.181 0.819 43 H 0.173 0.827 44 H 0.165 0.835 45 H 0.149 0.851 46 H 0.121 0.879 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.148 -25.831 15.151 29.969 hybrid contribution 0.414 2.063 0.009 2.104 sum 1.562 -23.769 15.160 28.235 Atomic orbital electron populations 1.69805 1.06517 1.26047 1.59508 1.25542 0.96394 1.01022 1.03808 0.85158 0.77752 0.79621 0.77336 1.21618 1.22274 1.19417 1.19662 0.91513 0.85179 1.40999 0.90587 1.42294 1.05323 1.00513 1.87623 1.21378 0.94983 0.84903 0.95398 0.92359 1.23691 0.97211 0.99135 0.99115 1.22484 0.98428 0.93641 0.97381 0.89825 1.21247 0.97626 0.95426 0.83930 1.45995 1.61797 1.08446 1.20618 1.20896 0.78305 0.82665 0.88032 1.90715 1.52535 1.39001 1.63821 1.20654 1.05340 0.93409 0.94103 1.20183 0.94524 0.96525 0.99803 1.22266 0.97715 0.90084 0.97482 1.67422 1.33104 1.09040 1.12565 1.23707 0.87149 1.00733 0.91702 1.19329 0.97569 0.94032 1.02451 1.21363 0.91700 1.01211 0.96451 1.21330 0.98631 0.94536 0.99747 1.21375 0.99215 0.95163 0.95974 1.21126 0.92741 1.00811 1.00205 1.18286 0.94676 0.93755 0.96900 1.23358 0.99996 0.98670 0.95605 0.94037 0.79325 0.93065 0.89144 0.91733 0.92362 0.74946 0.85418 0.84748 0.82307 0.79137 0.81946 0.82664 0.83507 0.85051 0.87913 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 8 H 0.08 3.96 7.83 -2.92 -0.02 3.93 16 9 N -0.72 -34.87 5.31 -320.46 -1.70 -36.58 16 10 C 0.14 5.34 4.56 45.52 0.21 5.54 16 11 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 12 C -0.15 -4.58 7.43 31.12 0.23 -4.34 16 13 C -0.10 -2.74 3.63 -10.27 -0.04 -2.78 16 14 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 15 C 0.14 3.42 5.51 86.38 0.48 3.90 16 16 N -0.72 -14.92 5.56 -463.07 -2.57 -17.49 16 17 C 0.51 11.84 7.82 87.66 0.69 12.53 16 18 O -0.58 -18.81 16.03 -3.04 -0.05 -18.86 16 19 C -0.10 -1.54 5.30 29.10 0.15 -1.38 16 20 C -0.11 -2.30 4.40 -19.75 -0.09 -2.39 16 21 C 0.07 1.51 10.72 84.11 0.90 2.41 16 22 N -0.51 -12.04 10.30 -195.54 -2.01 -14.06 16 23 C 0.14 2.59 11.05 85.30 0.94 3.53 16 24 C -0.13 -2.52 5.74 -21.31 -0.12 -2.64 16 25 C -0.09 -1.14 9.81 22.31 0.22 -0.93 16 26 C -0.12 -1.49 9.94 22.06 0.22 -1.27 16 27 C -0.10 -1.41 9.95 22.07 0.22 -1.19 16 28 C -0.13 -2.42 9.33 22.28 0.21 -2.21 16 29 C -0.03 -0.67 5.75 -21.29 -0.12 -0.79 16 30 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 31 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.37 19.44 7.90 -92.71 -0.73 18.71 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 2.35 7.90 -2.39 -0.02 2.33 16 35 H 0.06 1.62 7.84 -2.39 -0.02 1.60 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.41 6.86 8.47 -92.71 -0.79 6.07 16 38 H 0.13 1.49 6.84 -2.38 -0.02 1.47 16 39 H 0.13 1.45 8.06 -2.39 -0.02 1.43 16 40 H 0.16 2.98 8.05 -2.91 -0.02 2.95 16 41 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 43 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.13 2.15 6.65 -2.91 -0.02 2.13 16 46 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -75.25 393.80 1.09 -74.17 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.52 Total: 35.07 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.63 Total: -11.89 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -6.01 Total: -125.74 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.25 1.09 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479375341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.197 kcal (2) G-P(sol) polarization free energy of solvation -75.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds