Wall clock time and date at job start Sat Apr 11 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48499 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46827 * 300.00015 * 3 2 1 6 6 H 1.48495 * 109.47244 * 59.99652 * 3 2 1 7 7 C 1.38813 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99793 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00085 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47044 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.49935 * 55.06335 * 11 10 9 13 13 C 1.53048 * 109.49615 * 175.16059 * 11 10 9 14 14 C 1.53043 * 109.53658 * 181.31470 * 13 11 10 15 15 C 1.53194 * 109.31041 * 298.63020 * 14 13 11 16 16 N 1.46926 * 108.77517 * 54.63823 * 15 14 13 17 17 C 1.34783 * 120.63087 * 126.66230 * 16 15 14 18 18 O 1.21580 * 119.99984 * 175.49885 * 17 16 15 19 19 C 1.47555 * 119.99679 * 355.49698 * 17 16 15 20 20 C 1.38686 * 120.38781 * 54.90203 * 19 17 16 21 21 C 1.38969 * 120.53738 * 179.82850 * 20 19 17 22 22 C 1.36210 * 121.23544 * 0.40984 * 21 20 19 23 23 C 1.40713 * 120.20217 * 359.82901 * 22 21 20 24 24 N 1.33688 * 120.94672 * 180.02562 * 23 22 21 25 25 C 1.31067 * 121.33954 * 179.97438 * 24 23 22 26 26 C 1.39344 * 121.70820 * 0.02562 * 25 24 23 27 27 C 1.36667 * 119.86895 * 359.97438 * 26 25 24 28 28 C 1.40481 * 118.16783 * 0.02562 * 27 26 25 29 29 C 1.46923 * 118.73984 * 306.39053 * 16 15 14 30 30 H 0.97009 * 119.99753 * 0.02562 * 1 2 3 31 31 H 0.97011 * 120.00234 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47383 * 59.99668 * 10 9 7 33 33 H 1.08999 * 109.46626 * 299.98844 * 10 9 7 34 34 H 1.09000 * 109.45641 * 301.33325 * 13 11 10 35 35 H 1.08994 * 109.46070 * 61.30499 * 13 11 10 36 36 H 1.09000 * 109.49614 * 58.58347 * 14 13 11 37 37 H 1.08993 * 109.49276 * 178.64772 * 14 13 11 38 38 H 1.08993 * 109.58877 * 294.84772 * 15 14 13 39 39 H 1.09000 * 109.58632 * 174.42176 * 15 14 13 40 40 H 1.08006 * 119.73671 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.38441 * 180.22055 * 21 20 19 42 42 H 1.08005 * 119.89792 * 179.80908 * 22 21 20 43 43 H 1.08001 * 119.14467 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.06147 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.91872 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.58842 * 173.39749 * 29 16 15 47 47 H 1.09005 * 109.58733 * 293.67574 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3803 -4.7144 -0.8406 13 6 1.8243 -6.1423 -0.1185 14 6 0.8288 -7.3041 -0.1511 15 6 0.0296 -7.3234 1.1557 16 7 -0.5881 -6.0049 1.3517 17 6 -1.9133 -5.8931 1.5707 18 8 -2.3999 -4.8055 1.8126 19 6 -2.7736 -7.0907 1.5167 20 6 -2.4875 -8.1960 2.3040 21 6 -3.2976 -9.3242 2.2583 22 6 -4.3840 -9.3809 1.4386 23 6 -4.7098 -8.2850 0.6183 24 7 -5.7729 -8.3244 -0.1914 25 6 -6.0837 -7.3080 -0.9583 26 6 -5.3246 -6.1395 -0.9690 27 6 -4.2249 -6.0349 -0.1643 28 6 -3.8967 -7.1275 0.6554 29 6 0.2671 -4.8109 1.3106 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 2.6839 -3.7142 0.8921 33 1 2.6851 -3.7150 -0.8879 34 1 2.4113 -6.1411 -1.0369 35 1 2.4893 -6.2580 0.7374 36 1 0.1476 -7.1760 -0.9924 37 1 1.3700 -8.2438 -0.2611 38 1 0.6973 -7.5417 1.9891 39 1 -0.7472 -8.0859 1.0977 40 1 -1.6301 -8.1787 2.9605 41 1 -3.0596 -10.1732 2.8820 42 1 -4.9971 -10.2699 1.4180 43 1 -6.9502 -7.3782 -1.5991 44 1 -5.6048 -5.3182 -1.6119 45 1 -3.6248 -5.1371 -0.1588 46 1 -0.3530 -3.9155 1.3549 47 1 0.9525 -4.8229 2.1582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480292716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:26 Heat of formation + Delta-G solvation = 33.450880 kcal Electronic energy + Delta-G solvation = -29271.663743 eV Core-core repulsion = 25419.346510 eV Total energy + Delta-G solvation = -3852.317232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33966 -39.92741 -37.72058 -37.11743 -34.94875 -33.65332 -32.93446 -31.73082 -30.85559 -30.59722 -29.57364 -25.99001 -25.56951 -24.52601 -23.81263 -23.14929 -22.94060 -21.39689 -20.20633 -19.25506 -18.58072 -17.41658 -17.16252 -17.02249 -16.51752 -15.95587 -15.17951 -14.91889 -14.77683 -14.64631 -14.47538 -14.34205 -14.21863 -13.64545 -13.54327 -13.41098 -13.24947 -12.94034 -12.81446 -12.58234 -12.45954 -12.21398 -12.03509 -11.64386 -11.43625 -11.11286 -11.02989 -10.85460 -10.76598 -10.68332 -10.41291 -10.33022 -10.12230 -9.95208 -9.63597 -9.52610 -9.05850 -8.86873 -8.60438 -8.45672 -6.89742 -5.72554 -3.02252 -0.01451 0.55083 1.60022 2.47268 2.70735 3.02019 3.45383 3.50448 3.53185 3.85051 4.01015 4.18411 4.47646 4.52660 4.58508 4.60550 4.72471 4.78235 4.82301 4.89001 4.94361 5.07545 5.14624 5.17993 5.29648 5.41102 5.51720 5.54645 5.61206 5.61685 5.71004 5.77568 5.81642 5.84273 5.92310 5.97654 6.07143 6.09441 6.10311 6.17466 6.24513 6.36369 6.49952 6.50981 6.58874 6.74772 6.85456 7.38205 7.64049 7.72939 8.12658 8.45161 9.56371 10.13788 10.47992 11.49826 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002963 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.311023 B = 9448.521258 C =10660.516626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.097 3.903 16 N -0.601 5.601 17 C 0.554 3.446 18 O -0.519 6.519 19 C -0.092 4.092 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.077 4.077 23 C 0.124 3.876 24 N -0.478 5.478 25 C 0.135 3.865 26 C -0.173 4.173 27 C -0.046 4.046 28 C -0.071 4.071 29 C 0.120 3.880 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.104 0.896 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -24.075 1.247 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.026 4.026 16 N -0.334 5.334 17 C 0.341 3.659 18 O -0.395 6.395 19 C -0.096 4.096 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.096 4.096 23 C 0.003 3.997 24 N -0.186 5.186 25 C -0.037 4.037 26 C -0.193 4.193 27 C -0.072 4.072 28 C -0.073 4.073 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.123 0.877 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.087 -24.170 1.452 25.229 hybrid contribution 0.706 1.763 -0.036 1.900 sum -6.381 -22.406 1.417 23.340 Atomic orbital electron populations 1.69685 1.05060 1.25524 1.57506 1.24758 0.95507 0.97687 1.02985 0.86135 0.78739 0.84238 0.77177 1.20595 1.21902 1.21868 1.19243 0.91002 0.84146 1.42860 0.91170 1.42419 1.05918 0.99966 1.89497 1.20632 0.92939 0.85106 0.98058 1.21693 0.97991 0.95252 0.97699 0.90814 1.21531 0.97469 0.93666 1.02402 1.21907 0.98569 0.99219 0.97444 1.22004 0.97676 0.84767 0.98165 1.48131 1.06639 1.08413 1.70193 1.18202 0.81928 0.88284 0.77502 1.90887 1.73624 1.27552 1.47411 1.19962 0.95888 0.94834 0.98871 1.21379 0.99497 0.91790 0.98023 1.20807 0.94659 0.98218 0.98875 1.20931 0.96940 0.97363 0.94366 1.18801 0.91783 0.93093 0.96050 1.68057 1.15372 1.29233 1.05919 1.23013 0.97915 0.88372 0.94423 1.22007 0.96466 0.99922 1.00874 1.21737 0.96019 0.97657 0.91807 1.18568 0.95538 0.95503 0.97741 1.21791 0.93300 0.87638 0.97397 0.93541 0.78142 0.96203 0.96001 0.91443 0.91673 0.91578 0.90799 0.91053 0.89443 0.84709 0.84554 0.84384 0.82139 0.84028 0.83501 0.87746 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.72 5.38 -59.91 -0.32 -19.05 16 10 C 0.16 3.18 5.65 -4.04 -0.02 3.15 16 11 C -0.11 -1.70 2.38 -90.49 -0.22 -1.91 16 12 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 13 C -0.11 -1.33 5.17 -26.68 -0.14 -1.47 16 14 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 15 C 0.10 0.96 5.55 -3.71 -0.02 0.93 16 16 N -0.60 -8.33 2.97 -173.99 -0.52 -8.85 16 17 C 0.55 8.66 6.45 -12.46 -0.08 8.58 16 18 O -0.52 -10.37 15.24 5.30 0.08 -10.29 16 19 C -0.09 -1.18 4.90 -104.66 -0.51 -1.69 16 20 C -0.09 -0.84 7.42 -39.15 -0.29 -1.13 16 21 C -0.11 -0.83 9.92 -40.04 -0.40 -1.23 16 22 C -0.08 -0.73 9.96 -39.38 -0.39 -1.12 16 23 C 0.12 1.51 6.60 -84.88 -0.56 0.95 16 24 N -0.48 -5.75 10.34 -10.99 -0.11 -5.86 16 25 C 0.14 1.37 11.15 -17.47 -0.19 1.18 16 26 C -0.17 -1.87 10.03 -39.74 -0.40 -2.27 16 27 C -0.05 -0.62 9.31 -39.30 -0.37 -0.99 16 28 C -0.07 -0.95 5.76 -106.53 -0.61 -1.56 16 29 C 0.12 1.97 5.50 -3.71 -0.02 1.95 16 30 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.38 10.48 6.89 -40.82 -0.28 10.20 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.76 4.76 -51.93 -0.25 0.51 16 40 H 0.14 1.02 7.39 -52.48 -0.39 0.63 16 41 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.15 2.23 6.53 -52.49 -0.34 1.88 16 46 H 0.10 2.15 6.23 -51.93 -0.32 1.83 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -34.98 378.65 -10.72 -45.70 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.63 Total: 8.51 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -4.63 Total: -5.54 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.23 Total: -61.79 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.98 -10.72 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480292716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.154 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds