Wall clock time and date at job start Sat Apr 11 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48499 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46827 * 300.00015 * 3 2 1 6 6 H 1.48495 * 109.47244 * 59.99652 * 3 2 1 7 7 C 1.38813 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99793 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00066 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00085 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47044 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.49935 * 55.06335 * 11 10 9 13 13 C 1.53048 * 109.49615 * 175.16059 * 11 10 9 14 14 C 1.53043 * 109.53658 * 181.31470 * 13 11 10 15 15 C 1.53194 * 109.31041 * 298.63020 * 14 13 11 16 16 N 1.46926 * 108.77517 * 54.63823 * 15 14 13 17 17 C 1.34783 * 120.63087 * 126.66230 * 16 15 14 18 18 O 1.21580 * 119.99984 * 175.49885 * 17 16 15 19 19 C 1.47555 * 119.99679 * 355.49698 * 17 16 15 20 20 C 1.38686 * 120.38781 * 54.90203 * 19 17 16 21 21 C 1.38969 * 120.53738 * 179.82850 * 20 19 17 22 22 C 1.36210 * 121.23544 * 0.40984 * 21 20 19 23 23 C 1.40713 * 120.20217 * 359.82901 * 22 21 20 24 24 N 1.33688 * 120.94672 * 180.02562 * 23 22 21 25 25 C 1.31067 * 121.33954 * 179.97438 * 24 23 22 26 26 C 1.39344 * 121.70820 * 0.02562 * 25 24 23 27 27 C 1.36667 * 119.86895 * 359.97438 * 26 25 24 28 28 C 1.40481 * 118.16783 * 0.02562 * 27 26 25 29 29 C 1.46923 * 118.73984 * 306.39053 * 16 15 14 30 30 H 0.97009 * 119.99753 * 0.02562 * 1 2 3 31 31 H 0.97011 * 120.00234 * 359.97438 * 9 7 2 32 32 H 1.08994 * 109.47383 * 59.99668 * 10 9 7 33 33 H 1.08999 * 109.46626 * 299.98844 * 10 9 7 34 34 H 1.09000 * 109.45641 * 301.33325 * 13 11 10 35 35 H 1.08994 * 109.46070 * 61.30499 * 13 11 10 36 36 H 1.09000 * 109.49614 * 58.58347 * 14 13 11 37 37 H 1.08993 * 109.49276 * 178.64772 * 14 13 11 38 38 H 1.08993 * 109.58877 * 294.84772 * 15 14 13 39 39 H 1.09000 * 109.58632 * 174.42176 * 15 14 13 40 40 H 1.08006 * 119.73671 * 0.02562 * 20 19 17 41 41 H 1.08002 * 119.38441 * 180.22055 * 21 20 19 42 42 H 1.08005 * 119.89792 * 179.80908 * 22 21 20 43 43 H 1.08001 * 119.14467 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.06147 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.91872 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.58842 * 173.39749 * 29 16 15 47 47 H 1.09005 * 109.58733 * 293.67574 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3803 -4.7144 -0.8406 13 6 1.8243 -6.1423 -0.1185 14 6 0.8288 -7.3041 -0.1511 15 6 0.0296 -7.3234 1.1557 16 7 -0.5881 -6.0049 1.3517 17 6 -1.9133 -5.8931 1.5707 18 8 -2.3999 -4.8055 1.8126 19 6 -2.7736 -7.0907 1.5167 20 6 -2.4875 -8.1960 2.3040 21 6 -3.2976 -9.3242 2.2583 22 6 -4.3840 -9.3809 1.4386 23 6 -4.7098 -8.2850 0.6183 24 7 -5.7729 -8.3244 -0.1914 25 6 -6.0837 -7.3080 -0.9583 26 6 -5.3246 -6.1395 -0.9690 27 6 -4.2249 -6.0349 -0.1643 28 6 -3.8967 -7.1275 0.6554 29 6 0.2671 -4.8109 1.3106 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 0.0005 32 1 2.6839 -3.7142 0.8921 33 1 2.6851 -3.7150 -0.8879 34 1 2.4113 -6.1411 -1.0369 35 1 2.4893 -6.2580 0.7374 36 1 0.1476 -7.1760 -0.9924 37 1 1.3700 -8.2438 -0.2611 38 1 0.6973 -7.5417 1.9891 39 1 -0.7472 -8.0859 1.0977 40 1 -1.6301 -8.1787 2.9605 41 1 -3.0596 -10.1732 2.8820 42 1 -4.9971 -10.2699 1.4180 43 1 -6.9502 -7.3782 -1.5991 44 1 -5.6048 -5.3182 -1.6119 45 1 -3.6248 -5.1371 -0.1588 46 1 -0.3530 -3.9155 1.3549 47 1 0.9525 -4.8229 2.1582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480292716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:25 Heat of formation + Delta-G solvation = 10.617101 kcal Electronic energy + Delta-G solvation = -29272.653890 eV Core-core repulsion = 25419.346510 eV Total energy + Delta-G solvation = -3853.307379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26162 -40.99251 -38.93540 -37.99039 -36.63280 -34.69009 -34.33468 -33.13419 -31.84760 -31.62964 -30.95933 -27.37833 -26.92109 -25.40011 -24.97091 -24.53144 -23.94011 -22.69508 -21.46894 -20.28247 -19.48092 -19.12565 -18.24100 -18.06678 -17.60156 -17.04481 -16.72675 -16.23422 -15.86068 -15.67934 -15.44485 -15.41640 -15.34188 -15.16873 -15.01558 -14.33761 -14.26649 -14.16137 -14.11461 -13.85191 -13.72491 -13.10131 -13.05826 -12.96747 -12.84819 -12.56138 -12.41201 -12.17600 -12.04383 -11.96555 -11.87482 -11.68752 -11.58572 -11.36585 -11.16472 -10.99283 -10.53252 -9.85067 -9.75987 -9.31555 -9.03435 -7.96717 -5.27220 -0.86140 -0.25451 0.66569 1.43919 1.45520 1.46160 1.56028 1.77217 1.98946 2.53617 2.99840 3.23013 3.29543 3.36584 3.63920 3.69134 3.73500 3.78075 3.85846 3.88121 3.92837 4.05085 4.12639 4.15912 4.26851 4.37464 4.40528 4.43752 4.56943 4.69349 4.72263 4.74286 4.76434 4.85308 4.88303 4.97201 5.01052 5.03906 5.09204 5.19195 5.24101 5.27708 5.31087 5.42543 5.44985 5.47565 5.48977 5.75130 6.23835 6.27428 6.78847 6.97105 7.29385 8.05584 8.27566 9.26950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002963 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.311023 B = 9448.521258 C =10660.516626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.047 0.953 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.091 3.909 16 N -0.597 5.597 17 C 0.550 3.450 18 O -0.582 6.582 19 C -0.124 4.124 20 C -0.067 4.067 21 C -0.092 4.092 22 C -0.074 4.074 23 C 0.104 3.896 24 N -0.487 5.487 25 C 0.134 3.866 26 C -0.166 4.166 27 C -0.082 4.082 28 C -0.088 4.088 29 C 0.128 3.872 30 H 0.250 0.750 31 H 0.370 0.630 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.162 0.838 43 H 0.199 0.801 44 H 0.160 0.840 45 H 0.112 0.888 46 H 0.050 0.950 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 -28.168 1.841 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.032 3.968 11 C -0.114 4.114 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.030 4.030 16 N -0.328 5.328 17 C 0.339 3.661 18 O -0.462 6.462 19 C -0.127 4.127 20 C -0.085 4.085 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.017 4.017 24 N -0.195 5.195 25 C -0.039 4.039 26 C -0.186 4.186 27 C -0.109 4.109 28 C -0.090 4.090 29 C 0.005 3.995 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.178 0.822 41 H 0.201 0.799 42 H 0.180 0.820 43 H 0.216 0.784 44 H 0.177 0.823 45 H 0.130 0.870 46 H 0.068 0.932 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.662 -28.342 2.036 28.973 hybrid contribution 0.293 2.935 -0.220 2.958 sum -5.369 -25.406 1.816 26.031 Atomic orbital electron populations 1.69880 1.06899 1.25932 1.59602 1.25669 0.96360 1.01471 1.03758 0.85021 0.78352 0.79497 0.76579 1.18523 1.22044 1.22198 1.19711 0.91606 0.85257 1.40992 0.90164 1.42695 1.05520 1.01537 1.89419 1.20846 0.93551 0.84113 0.98315 1.21543 0.97010 0.96542 0.96268 0.93417 1.21516 0.97698 0.91441 1.03676 1.21907 0.97955 0.99953 0.96702 1.22392 0.98542 0.82645 0.99415 1.48199 1.06091 1.09244 1.69222 1.18771 0.82517 0.88534 0.76266 1.90841 1.74794 1.30234 1.50378 1.19769 0.96345 0.95013 1.01621 1.21764 0.99931 0.90724 0.96128 1.21265 0.93062 0.98578 0.98174 1.21326 0.97515 0.97036 0.93414 1.19195 0.91875 0.93562 0.97066 1.68126 1.15366 1.29759 1.06220 1.23562 0.98544 0.87395 0.94370 1.22270 0.95356 1.00972 0.99981 1.21632 0.97512 0.97353 0.94358 1.18724 0.96260 0.95930 0.98113 1.21454 0.92807 0.87168 0.98065 0.94165 0.79871 0.95234 0.95433 0.90597 0.89785 0.93166 0.86809 0.88078 0.87682 0.82197 0.79900 0.81998 0.78434 0.82250 0.86959 0.93154 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.25 13.06 21.65 0.28 -62.97 16 2 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 3 Si 0.98 47.88 29.55 68.60 2.03 49.90 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.24 -14.14 9.99 84.03 0.84 -13.30 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.75 -40.10 5.38 -343.46 -1.85 -41.95 16 10 C 0.16 6.37 5.65 86.38 0.49 6.86 16 11 C -0.09 -3.08 2.38 -10.71 -0.03 -3.10 16 12 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.11 -2.26 5.17 30.62 0.16 -2.10 16 14 C -0.13 -2.12 6.08 30.67 0.19 -1.94 16 15 C 0.09 1.55 5.55 86.36 0.48 2.03 16 16 N -0.60 -16.99 2.97 -822.64 -2.45 -19.43 16 17 C 0.55 18.50 6.45 86.70 0.56 19.06 16 18 O -0.58 -26.17 15.24 -3.97 -0.06 -26.23 16 19 C -0.12 -3.23 4.90 -19.89 -0.10 -3.33 16 20 C -0.07 -1.09 7.42 22.55 0.17 -0.92 16 21 C -0.09 -1.03 9.92 21.97 0.22 -0.82 16 22 C -0.07 -1.17 9.96 22.40 0.22 -0.95 16 23 C 0.10 2.44 6.60 40.27 0.27 2.71 16 24 N -0.49 -11.18 10.34 -188.68 -1.95 -13.13 16 25 C 0.13 2.62 11.15 85.07 0.95 3.57 16 26 C -0.17 -3.81 10.03 22.17 0.22 -3.59 16 27 C -0.08 -2.48 9.31 22.45 0.21 -2.27 16 28 C -0.09 -2.44 5.76 -21.10 -0.12 -2.56 16 29 C 0.13 4.45 5.50 86.36 0.48 4.93 16 30 H 0.25 15.71 8.31 -92.70 -0.77 14.94 16 31 H 0.37 21.79 6.89 -92.70 -0.64 21.15 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 1.47 4.76 -2.39 -0.01 1.46 16 40 H 0.16 1.74 7.39 -2.91 -0.02 1.72 16 41 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 44 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.11 4.07 6.53 -2.91 -0.02 4.05 16 46 H 0.05 2.32 6.23 -2.39 -0.01 2.30 16 47 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -84.46 378.65 2.02 -82.44 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.35 Total: 31.46 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.66 Total: -0.09 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -5.96 Total: -137.47 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -84.46 2.02 -82.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480292716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.054 kcal (2) G-P(sol) polarization free energy of solvation -84.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds