Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99712 * 2 1 4 4 H 1.48501 * 109.47395 * 239.99891 * 3 2 1 5 5 H 1.48503 * 109.47705 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47258 * 119.99991 * 3 2 1 7 7 C 1.38806 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00218 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99804 * 179.72828 * 9 7 2 11 11 C 1.53006 * 109.46832 * 175.31224 * 10 9 7 12 12 H 1.08995 * 109.58776 * 309.38598 * 11 10 9 13 13 C 1.53192 * 109.58448 * 188.96121 * 11 10 9 14 14 C 1.53046 * 109.31310 * 185.57692 * 13 11 10 15 15 C 1.53038 * 109.53518 * 61.36519 * 14 13 11 16 16 C 1.53191 * 109.31664 * 298.63700 * 15 14 13 17 17 N 1.46925 * 109.58750 * 69.67233 * 11 10 9 18 18 C 1.34784 * 120.62941 * 353.37591 * 17 11 10 19 19 O 1.21599 * 119.99848 * 5.79765 * 18 17 11 20 20 C 1.47432 * 119.99575 * 185.80167 * 18 17 11 21 21 C 1.38744 * 120.33855 * 38.12138 * 20 18 17 22 22 C 1.38868 * 120.72563 * 180.02562 * 21 20 18 23 23 C 1.36351 * 121.05743 * 0.02562 * 22 21 20 24 24 C 1.40434 * 120.08681 * 0.02562 * 23 22 21 25 25 C 1.40811 * 121.26702 * 180.02562 * 24 23 22 26 26 C 1.36634 * 118.15001 * 179.14917 * 25 24 23 27 27 C 1.39228 * 119.90992 * 0.78979 * 26 25 24 28 28 N 1.31230 * 121.69914 * 359.46390 * 27 26 25 29 29 C 1.33350 * 121.34517 * 359.97127 * 28 27 26 30 30 H 0.96992 * 119.99809 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00090 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47401 * 295.30945 * 10 9 7 33 33 H 1.08996 * 109.47840 * 55.31585 * 10 9 7 34 34 H 1.09000 * 109.49957 * 305.52659 * 13 11 10 35 35 H 1.09004 * 109.49836 * 65.62715 * 13 11 10 36 36 H 1.09000 * 109.45904 * 301.34980 * 14 13 11 37 37 H 1.08992 * 109.44877 * 181.37779 * 14 13 11 38 38 H 1.09000 * 109.50008 * 178.68417 * 15 14 13 39 39 H 1.08997 * 109.50222 * 58.58959 * 15 14 13 40 40 H 1.09005 * 109.58347 * 294.84925 * 16 15 14 41 41 H 1.08999 * 109.70706 * 174.49675 * 16 15 14 42 42 H 1.08003 * 119.63490 * 359.97438 * 21 20 18 43 43 H 1.07994 * 119.46893 * 179.97438 * 22 21 20 44 44 H 1.08003 * 119.95356 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.92134 * 359.95498 * 25 24 23 46 46 H 1.08004 * 120.04066 * 180.21112 * 26 25 24 47 47 H 1.08007 * 119.15225 * 179.43546 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0071 11 6 1.0686 -4.8176 0.1122 12 1 0.3975 -4.6407 0.9526 13 6 1.8355 -6.1257 0.3302 14 6 0.8522 -7.2983 0.3096 15 6 0.1629 -7.3642 -1.0552 16 6 -0.6229 -6.0701 -1.2889 17 7 0.2874 -4.9283 -1.1272 18 6 0.4034 -3.9998 -2.0973 19 8 1.2351 -3.1182 -1.9987 20 6 -0.4781 -4.0531 -3.2778 21 6 -1.8090 -4.4212 -3.1426 22 6 -2.6463 -4.4746 -4.2492 23 6 -2.1855 -4.1683 -5.4954 24 6 -0.8449 -3.7918 -5.6775 25 6 -0.3430 -3.4698 -6.9531 26 6 0.9669 -3.0946 -7.0546 27 6 1.7680 -3.0556 -5.9165 28 7 1.2968 -3.3619 -4.7307 29 6 0.0248 -3.7250 -4.5623 30 1 -0.4849 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6161 -3.7493 -0.9389 33 1 2.7501 -3.6812 0.8347 34 1 2.5705 -6.2533 -0.4645 35 1 2.3432 -6.0935 1.2942 36 1 0.1029 -7.1576 1.0885 37 1 1.3923 -8.2279 0.4888 38 1 -0.5200 -8.2135 -1.0773 39 1 0.9136 -7.4801 -1.8368 40 1 -1.4323 -5.9979 -0.5624 41 1 -1.0361 -6.0681 -2.2976 42 1 -2.1978 -4.6698 -2.1661 43 1 -3.6787 -4.7642 -4.1207 44 1 -2.8523 -4.2162 -6.3437 45 1 -0.9793 -3.5056 -7.8251 46 1 1.3827 -2.8378 -8.0177 47 1 2.8042 -2.7661 -6.0122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480356069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = 59.912001 kcal Electronic energy + Delta-G solvation = -30620.795979 eV Core-core repulsion = 26769.626187 eV Total energy + Delta-G solvation = -3851.169792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08116 -40.99664 -38.11734 -37.95752 -36.33798 -34.55069 -33.64626 -33.58105 -31.66175 -31.39115 -30.83429 -27.76063 -26.11854 -25.26858 -24.72115 -24.28009 -24.06115 -22.59298 -21.50968 -20.21436 -19.40511 -18.98982 -18.00380 -17.76522 -17.04689 -16.74376 -16.65928 -16.04402 -15.72127 -15.46979 -15.36967 -15.20344 -15.13224 -14.99315 -14.83808 -14.32031 -14.24081 -13.96909 -13.84875 -13.59356 -13.45138 -13.18043 -12.94403 -12.82495 -12.76608 -12.57487 -12.29791 -12.16694 -12.08350 -11.85835 -11.72576 -11.55048 -11.39074 -11.28105 -10.89409 -10.40301 -9.74219 -9.71384 -9.42559 -9.13461 -8.62851 -7.85887 -5.04307 -0.69272 -0.13661 0.88526 1.37459 1.43801 1.48705 1.90671 2.14985 2.35145 2.59197 3.16994 3.40141 3.46637 3.54811 3.79291 3.82713 3.85779 3.90334 3.98861 4.06124 4.09994 4.12398 4.23371 4.33828 4.39269 4.46053 4.48093 4.54437 4.60749 4.73490 4.75663 4.86645 4.95530 4.98263 5.03320 5.06138 5.09417 5.13125 5.14379 5.23254 5.28331 5.34695 5.38969 5.47747 5.52515 5.61075 5.88846 5.91838 6.35286 6.69188 7.11013 7.40851 7.67661 8.20986 8.44793 9.38959 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007966 B = 0.005596 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.891734 B = 5002.717158 C = 7204.252548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.086 4.086 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.208 4.208 8 H 0.058 0.942 9 N -0.702 5.702 10 C 0.163 3.837 11 C 0.150 3.850 12 H 0.065 0.935 13 C -0.119 4.119 14 C -0.110 4.110 15 C -0.127 4.127 16 C 0.093 3.907 17 N -0.613 5.613 18 C 0.514 3.486 19 O -0.481 6.481 20 C -0.132 4.132 21 C -0.068 4.068 22 C -0.124 4.124 23 C -0.069 4.069 24 C -0.128 4.128 25 C -0.051 4.051 26 C -0.175 4.175 27 C 0.111 3.889 28 N -0.508 5.508 29 C 0.125 3.875 30 H 0.244 0.756 31 H 0.366 0.634 32 H 0.017 0.983 33 H 0.012 0.988 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.174 0.826 44 H 0.178 0.822 45 H 0.186 0.814 46 H 0.176 0.824 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 -19.983 -13.649 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.277 4.277 3 Si 0.797 3.203 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.341 4.341 8 H 0.076 0.924 9 N -0.342 5.342 10 C 0.037 3.963 11 C 0.046 3.954 12 H 0.083 0.917 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.166 4.166 16 C -0.029 4.029 17 N -0.350 5.350 18 C 0.301 3.699 19 O -0.352 6.352 20 C -0.136 4.136 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.087 4.087 24 C -0.130 4.130 25 C -0.077 4.077 26 C -0.195 4.195 27 C -0.061 4.061 28 N -0.216 5.216 29 C 0.003 3.997 30 H 0.053 0.947 31 H 0.197 0.803 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.165 0.835 43 H 0.192 0.808 44 H 0.195 0.805 45 H 0.203 0.797 46 H 0.193 0.807 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.627 -19.381 -12.755 24.130 hybrid contribution 0.180 1.562 -0.435 1.631 sum -6.447 -17.820 -13.190 23.089 Atomic orbital electron populations 1.69819 1.06311 1.25102 1.61480 1.25372 0.96416 1.00442 1.05466 0.85278 0.77219 0.79997 0.77766 1.21938 1.21809 1.20027 1.19413 0.90624 0.85938 1.38102 0.92449 1.42274 1.04593 1.00586 1.86728 1.20918 0.93973 0.85117 0.96319 1.21337 0.92616 0.95482 0.85924 0.91712 1.21860 0.98306 0.93373 1.02281 1.21489 0.98281 0.97475 0.97534 1.21906 0.99986 0.97222 0.97441 1.22305 0.92335 0.84835 1.03385 1.47878 1.44795 1.25438 1.16914 1.18530 0.85468 0.82454 0.83479 1.91163 1.33982 1.34668 1.75394 1.20140 0.96099 1.04998 0.92358 1.21824 0.91011 0.94599 1.01403 1.21272 1.01421 1.00053 0.91358 1.21604 0.92829 0.94810 0.99486 1.19198 0.96206 1.03355 0.94221 1.21985 0.96037 0.93220 0.96419 1.22245 0.95166 1.01342 1.00740 1.23502 1.01460 0.93359 0.87775 1.68075 1.15032 1.11426 1.27020 1.18967 0.90111 0.97370 0.93254 0.94743 0.80271 0.96579 0.96999 0.92951 0.89870 0.90723 0.89715 0.87700 0.93177 0.90049 0.88668 0.83466 0.80812 0.80510 0.79695 0.80679 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -66.63 13.06 21.65 0.28 -66.35 16 2 C -0.09 -5.66 5.50 84.86 0.47 -5.20 16 3 Si 0.97 52.71 29.55 68.60 2.03 54.74 16 4 H -0.29 -15.84 7.11 99.48 0.71 -15.14 16 5 H -0.29 -15.65 7.11 99.48 0.71 -14.94 16 6 H -0.27 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.21 -13.57 9.70 84.03 0.82 -12.75 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.70 -41.88 3.25 -343.46 -1.12 -42.99 16 10 C 0.16 8.05 4.87 86.38 0.42 8.47 16 11 C 0.15 5.59 2.93 44.98 0.13 5.72 16 12 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.12 -3.31 5.36 30.67 0.16 -3.14 16 14 C -0.11 -2.16 5.88 30.62 0.18 -1.98 16 15 C -0.13 -2.44 6.08 30.67 0.19 -2.26 16 16 C 0.09 2.24 4.83 86.36 0.42 2.65 16 17 N -0.61 -22.08 2.97 -798.86 -2.37 -24.45 16 18 C 0.51 23.16 6.59 86.66 0.57 23.73 16 19 O -0.48 -27.34 9.87 -4.03 -0.04 -27.38 16 20 C -0.13 -5.03 5.23 -19.86 -0.10 -5.13 16 21 C -0.07 -1.87 7.34 22.54 0.17 -1.71 16 22 C -0.12 -2.37 9.93 21.98 0.22 -2.15 16 23 C -0.07 -1.29 9.75 22.36 0.22 -1.07 16 24 C -0.13 -3.40 5.74 -21.29 -0.12 -3.52 16 25 C -0.05 -1.00 9.90 22.52 0.22 -0.78 16 26 C -0.18 -3.75 10.03 22.13 0.22 -3.53 16 27 C 0.11 3.47 11.15 85.02 0.95 4.41 16 28 N -0.51 -21.20 9.07 -187.96 -1.70 -22.91 16 29 C 0.13 4.73 6.58 40.61 0.27 5.00 16 30 H 0.24 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.37 23.16 7.09 -92.71 -0.66 22.51 16 32 H 0.02 0.91 6.29 -2.39 -0.02 0.90 16 33 H 0.01 0.59 8.13 -2.39 -0.02 0.57 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.66 8.09 -2.38 -0.02 1.64 16 41 H 0.10 2.15 4.62 -2.39 -0.01 2.14 16 42 H 0.15 3.55 6.32 -2.91 -0.02 3.53 16 43 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 44 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 45 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 47 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -95.80 370.42 2.80 -93.00 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.33 Total: 29.57 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.39 Total: 6.77 kcal Atomic # 7 Polarization: -151.79 SS G_CDS: -4.91 Total: -156.70 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.04 Total: -27.38 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.03 Total: 54.74 kcal Total: -95.80 2.80 -93.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480356069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.912 kcal (2) G-P(sol) polarization free energy of solvation -95.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds