Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99516 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.47512 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46970 * 119.99742 * 3 2 1 7 7 C 1.38806 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64711 * 0.03437 * 9 7 2 11 11 C 1.54914 * 104.83301 * 204.09322 * 10 9 7 12 12 C 1.55155 * 101.58213 * 322.99610 * 11 10 9 13 13 H 1.08998 * 110.71565 * 277.13440 * 12 11 10 14 14 C 1.53001 * 110.87351 * 153.93263 * 12 11 10 15 15 C 1.52992 * 109.47127 * 177.54520 * 14 12 11 16 16 N 1.46502 * 109.46920 * 180.02562 * 15 14 12 17 17 C 1.34783 * 119.99836 * 180.02562 * 16 15 14 18 18 O 1.21585 * 120.00284 * 359.97438 * 17 16 15 19 19 C 1.47567 * 119.99707 * 179.97438 * 17 16 15 20 20 C 1.38700 * 120.43522 * 354.08654 * 19 17 16 21 21 C 1.39004 * 120.75087 * 179.97438 * 20 19 17 22 22 C 1.36349 * 121.19189 * 0.04833 * 21 20 19 23 23 C 1.40354 * 119.92800 * 359.97136 * 22 21 20 24 24 C 1.40679 * 122.10389 * 180.02562 * 23 22 21 25 25 C 1.36265 * 118.66465 * 179.19539 * 24 23 22 26 26 N 1.32504 * 121.84102 * 0.79550 * 25 24 23 27 27 C 1.31315 * 122.71875 * 359.45252 * 26 25 24 28 28 C 1.40140 * 119.91982 * 0.02562 * 27 26 25 29 29 C 1.47019 * 125.64874 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00532 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36959 * 322.93508 * 10 9 7 32 32 H 1.09002 * 110.36797 * 85.14918 * 10 9 7 33 33 H 1.08998 * 111.00499 * 204.91387 * 11 10 9 34 34 H 1.09007 * 110.99835 * 81.07111 * 11 10 9 35 35 H 1.09001 * 109.47099 * 297.55301 * 14 12 11 36 36 H 1.09002 * 109.46814 * 57.54731 * 14 12 11 37 37 H 1.09002 * 109.47541 * 299.99869 * 15 14 12 38 38 H 1.08999 * 109.47367 * 59.99930 * 15 14 12 39 39 H 0.96998 * 120.00398 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.62856 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.40471 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.03326 * 179.97438 * 22 21 20 43 43 H 1.08007 * 120.66646 * 359.95330 * 24 23 22 44 44 H 1.08004 * 119.08014 * 180.24799 * 25 24 23 45 45 H 1.07999 * 120.04259 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.88410 * 59.56196 * 29 9 7 47 47 H 1.08996 * 110.01334 * 298.46262 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0007 11 6 -0.4020 -3.9323 0.6111 12 6 0.7786 -4.7524 0.0273 13 1 0.5470 -5.0982 -0.9801 14 6 1.1245 -5.9333 0.9366 15 6 2.2491 -6.7535 0.3018 16 7 2.5798 -7.8845 1.1722 17 6 3.5493 -8.7497 0.8140 18 8 4.1490 -8.5918 -0.2318 19 6 3.8827 -9.8886 1.6910 20 6 3.2922 -10.0099 2.9402 21 6 3.6011 -11.0803 3.7715 22 6 4.4908 -12.0393 3.3868 23 6 5.1118 -11.9550 2.1310 24 6 6.0359 -12.9187 1.6878 25 6 6.5845 -12.7769 0.4485 26 7 6.2827 -11.7530 -0.3365 27 6 5.4333 -10.8153 0.0150 28 6 4.8056 -10.8742 1.2666 29 6 1.9320 -3.7274 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5998 -1.7588 0.6143 32 1 -0.5265 -2.4851 -1.0193 33 1 -1.3591 -4.3328 0.2769 34 1 -0.3534 -3.8979 1.6995 35 1 1.4500 -5.5608 1.9079 36 1 0.2439 -6.5627 1.0654 37 1 1.9236 -7.1261 -0.6695 38 1 3.1297 -6.1241 0.1729 39 1 2.1011 -8.0108 2.0064 40 1 2.5843 -9.2642 3.2708 41 1 3.1281 -11.1535 4.7396 42 1 4.7173 -12.8628 4.0479 43 1 6.2959 -13.7607 2.3122 44 1 7.2917 -13.5150 0.0999 45 1 5.2193 -9.9992 -0.6593 46 1 2.5579 -3.8510 0.8843 47 1 2.5305 -3.8659 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481461115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 44.855220 kcal Electronic energy + Delta-G solvation = -27756.001663 eV Core-core repulsion = 23904.178960 eV Total energy + Delta-G solvation = -3851.822703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.42765 -39.67397 -37.86856 -37.55530 -35.43295 -33.44164 -33.01346 -31.57893 -31.10346 -29.96424 -28.92059 -26.70501 -25.17890 -24.60693 -23.87280 -23.50561 -22.18039 -21.02617 -20.11088 -19.40673 -18.31971 -18.14956 -17.11777 -16.86451 -16.52922 -16.00512 -15.86241 -15.28573 -15.12409 -14.85377 -14.61157 -14.41545 -14.06515 -13.75485 -13.63365 -13.49765 -13.10962 -12.54269 -12.50699 -12.47519 -12.30578 -11.99951 -11.94088 -11.71398 -11.58794 -11.09773 -10.91232 -10.74288 -10.54570 -10.21498 -10.16173 -10.00535 -9.91096 -9.74858 -9.64506 -9.57074 -9.45920 -9.28502 -8.62375 -8.49335 -6.80081 -5.62852 -3.04267 -0.29925 0.47645 1.26177 2.34968 2.83269 2.94706 3.42150 3.46211 3.47564 3.75044 4.07669 4.14273 4.24975 4.35816 4.44683 4.51334 4.51561 4.65645 4.87458 4.88128 5.05858 5.14574 5.25685 5.29877 5.31990 5.48783 5.49890 5.57751 5.60737 5.64412 5.70825 5.76141 5.86252 5.89039 5.99754 6.10631 6.19225 6.22001 6.28809 6.38531 6.45262 6.60889 6.63820 6.77631 6.98169 7.20735 7.54507 7.65508 7.72503 7.87993 7.93359 8.39260 9.25101 9.86230 10.51440 11.40962 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.001872 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.341108 B =14953.331139 C =15451.215532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.073 0.927 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.718 5.718 17 C 0.557 3.443 18 O -0.529 6.529 19 C -0.098 4.098 20 C -0.079 4.079 21 C -0.107 4.107 22 C -0.087 4.087 23 C -0.030 4.030 24 C -0.164 4.164 25 C 0.079 3.921 26 N -0.489 5.489 27 C 0.146 3.854 28 C -0.080 4.080 29 C 0.139 3.861 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.153 0.847 45 H 0.201 0.799 46 H 0.022 0.978 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -27.868 9.257 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.368 5.368 17 C 0.344 3.656 18 O -0.407 6.407 19 C -0.103 4.103 20 C -0.098 4.098 21 C -0.126 4.126 22 C -0.105 4.105 23 C -0.036 4.036 24 C -0.184 4.184 25 C -0.065 4.065 26 N -0.197 5.197 27 C -0.024 4.024 28 C -0.083 4.083 29 C 0.013 3.987 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.170 0.830 45 H 0.217 0.783 46 H 0.040 0.960 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.796 -27.563 7.692 29.197 hybrid contribution -0.152 0.612 1.331 1.473 sum 5.644 -26.951 9.023 28.976 Atomic orbital electron populations 1.69790 1.04869 1.24807 1.57780 1.24786 0.95741 0.97711 1.02583 0.86153 0.78392 0.83058 0.77906 1.21217 1.21592 1.21193 1.19046 0.90488 0.82560 1.42880 0.90595 1.44509 1.01997 0.99801 1.86807 1.21926 0.84704 0.92636 0.98154 1.23037 0.95846 0.98868 0.99945 1.22091 0.97576 0.93696 0.98343 0.90897 1.21797 0.97066 0.96780 0.99855 1.21610 0.99243 0.86349 0.93501 1.46000 1.37641 1.28012 1.25189 1.18076 0.80016 0.81948 0.85538 1.90599 1.51382 1.74023 1.24742 1.19929 0.99093 0.95810 0.95493 1.21459 0.97850 0.97820 0.92711 1.20923 0.97771 0.93858 1.00090 1.21185 0.95592 0.99029 0.94703 1.18173 0.96548 0.94409 0.94420 1.21884 0.98462 0.99792 0.98266 1.22358 0.97856 0.95491 0.90746 1.67691 1.14320 1.02243 1.35414 1.24645 0.88194 0.95987 0.93547 1.18864 0.98129 0.94820 0.96447 1.21365 0.93656 0.85937 0.97707 0.93743 0.87694 0.97129 0.92487 0.92215 0.91109 0.91566 0.91006 0.90464 0.76501 0.84836 0.84648 0.84644 0.84366 0.82991 0.78323 0.96016 0.96229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.61 3.39 -170.07 -0.58 -16.19 16 10 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 11 C -0.14 -2.50 6.54 -24.58 -0.16 -2.66 16 12 C -0.10 -1.58 2.95 -88.78 -0.26 -1.84 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -1.39 4.73 -26.73 -0.13 -1.51 16 15 C 0.12 1.37 5.54 -4.04 -0.02 1.34 16 16 N -0.72 -7.06 5.51 -61.34 -0.34 -7.40 16 17 C 0.56 6.55 7.73 -12.45 -0.10 6.46 16 18 O -0.53 -7.90 13.48 5.29 0.07 -7.83 16 19 C -0.10 -0.98 5.90 -104.67 -0.62 -1.60 16 20 C -0.08 -0.54 9.51 -39.13 -0.37 -0.92 16 21 C -0.11 -0.60 9.93 -39.98 -0.40 -1.00 16 22 C -0.09 -0.55 9.79 -39.47 -0.39 -0.93 16 23 C -0.03 -0.27 5.74 -106.84 -0.61 -0.89 16 24 C -0.16 -1.29 9.88 -39.37 -0.39 -1.67 16 25 C 0.08 0.73 11.07 -17.97 -0.20 0.54 16 26 N -0.49 -6.05 10.30 -13.21 -0.14 -6.19 16 27 C 0.15 1.85 10.49 -17.06 -0.18 1.67 16 28 C -0.08 -0.88 5.76 -106.59 -0.61 -1.50 16 29 C 0.14 2.87 6.10 -3.06 -0.02 2.85 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16 39 H 0.40 2.72 6.54 -40.82 -0.27 2.45 16 40 H 0.13 0.56 6.42 -52.49 -0.34 0.22 16 41 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 43 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 45 H 0.20 2.74 4.98 -52.49 -0.26 2.48 16 46 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -34.15 379.37 -11.02 -45.17 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.57 Total: 0.89 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.72 Total: -4.91 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.49 Total: -56.29 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.07 Total: -7.83 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.15 -11.02 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481461115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.022 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds