Wall clock time and date at job start Sat Apr 11 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99516 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.47512 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46970 * 119.99742 * 3 2 1 7 7 C 1.38806 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00422 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99848 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64711 * 0.03437 * 9 7 2 11 11 C 1.54914 * 104.83301 * 204.09322 * 10 9 7 12 12 C 1.55155 * 101.58213 * 322.99610 * 11 10 9 13 13 H 1.08998 * 110.71565 * 277.13440 * 12 11 10 14 14 C 1.53001 * 110.87351 * 153.93263 * 12 11 10 15 15 C 1.52992 * 109.47127 * 177.54520 * 14 12 11 16 16 N 1.46502 * 109.46920 * 180.02562 * 15 14 12 17 17 C 1.34783 * 119.99836 * 180.02562 * 16 15 14 18 18 O 1.21585 * 120.00284 * 359.97438 * 17 16 15 19 19 C 1.47567 * 119.99707 * 179.97438 * 17 16 15 20 20 C 1.38700 * 120.43522 * 354.08654 * 19 17 16 21 21 C 1.39004 * 120.75087 * 179.97438 * 20 19 17 22 22 C 1.36349 * 121.19189 * 0.04833 * 21 20 19 23 23 C 1.40354 * 119.92800 * 359.97136 * 22 21 20 24 24 C 1.40679 * 122.10389 * 180.02562 * 23 22 21 25 25 C 1.36265 * 118.66465 * 179.19539 * 24 23 22 26 26 N 1.32504 * 121.84102 * 0.79550 * 25 24 23 27 27 C 1.31315 * 122.71875 * 359.45252 * 26 25 24 28 28 C 1.40140 * 119.91982 * 0.02562 * 27 26 25 29 29 C 1.47019 * 125.64874 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00532 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36959 * 322.93508 * 10 9 7 32 32 H 1.09002 * 110.36797 * 85.14918 * 10 9 7 33 33 H 1.08998 * 111.00499 * 204.91387 * 11 10 9 34 34 H 1.09007 * 110.99835 * 81.07111 * 11 10 9 35 35 H 1.09001 * 109.47099 * 297.55301 * 14 12 11 36 36 H 1.09002 * 109.46814 * 57.54731 * 14 12 11 37 37 H 1.09002 * 109.47541 * 299.99869 * 15 14 12 38 38 H 1.08999 * 109.47367 * 59.99930 * 15 14 12 39 39 H 0.96998 * 120.00398 * 0.02562 * 16 15 14 40 40 H 1.08002 * 119.62856 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.40471 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.03326 * 179.97438 * 22 21 20 43 43 H 1.08007 * 120.66646 * 359.95330 * 24 23 22 44 44 H 1.08004 * 119.08014 * 180.24799 * 25 24 23 45 45 H 1.07999 * 120.04259 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.88410 * 59.56196 * 29 9 7 47 47 H 1.08996 * 110.01334 * 298.46262 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0007 11 6 -0.4020 -3.9323 0.6111 12 6 0.7786 -4.7524 0.0273 13 1 0.5470 -5.0982 -0.9801 14 6 1.1245 -5.9333 0.9366 15 6 2.2491 -6.7535 0.3018 16 7 2.5798 -7.8845 1.1722 17 6 3.5493 -8.7497 0.8140 18 8 4.1490 -8.5918 -0.2318 19 6 3.8827 -9.8886 1.6910 20 6 3.2922 -10.0099 2.9402 21 6 3.6011 -11.0803 3.7715 22 6 4.4908 -12.0393 3.3868 23 6 5.1118 -11.9550 2.1310 24 6 6.0359 -12.9187 1.6878 25 6 6.5845 -12.7769 0.4485 26 7 6.2827 -11.7530 -0.3365 27 6 5.4333 -10.8153 0.0150 28 6 4.8056 -10.8742 1.2666 29 6 1.9320 -3.7274 0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5998 -1.7588 0.6143 32 1 -0.5265 -2.4851 -1.0193 33 1 -1.3591 -4.3328 0.2769 34 1 -0.3534 -3.8979 1.6995 35 1 1.4500 -5.5608 1.9079 36 1 0.2439 -6.5627 1.0654 37 1 1.9236 -7.1261 -0.6695 38 1 3.1297 -6.1241 0.1729 39 1 2.1011 -8.0108 2.0064 40 1 2.5843 -9.2642 3.2708 41 1 3.1281 -11.1535 4.7396 42 1 4.7173 -12.8628 4.0479 43 1 6.2959 -13.7607 2.3122 44 1 7.2917 -13.5150 0.0999 45 1 5.2193 -9.9992 -0.6593 46 1 2.5579 -3.8510 0.8843 47 1 2.5305 -3.8659 -0.8998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481461115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:04 Heat of formation + Delta-G solvation = 22.965159 kcal Electronic energy + Delta-G solvation = -27756.950887 eV Core-core repulsion = 23904.178960 eV Total energy + Delta-G solvation = -3852.771927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10654 -40.53062 -39.39253 -38.20216 -36.57943 -34.83056 -33.98883 -32.58140 -32.17691 -31.04864 -30.34826 -28.15934 -26.67467 -25.56848 -24.53575 -24.42313 -23.29514 -21.97183 -21.81402 -20.74089 -19.03616 -18.91351 -18.75826 -17.77019 -17.25196 -17.08348 -16.87097 -16.63447 -16.25966 -15.94986 -15.60156 -15.38311 -15.30168 -14.74081 -14.64053 -14.35916 -14.26114 -13.82973 -13.69251 -13.50042 -13.32055 -13.15641 -13.04380 -13.00888 -12.82006 -12.67454 -12.53947 -12.23518 -12.03362 -11.77062 -11.53623 -11.42469 -11.24064 -11.19644 -10.90373 -10.73206 -10.40553 -10.20746 -10.17073 -9.10368 -8.87154 -7.77317 -5.21576 -0.92146 -0.12646 0.56680 1.44926 1.48301 1.54716 1.70891 2.01455 2.21060 2.49396 3.07339 3.31099 3.45602 3.54830 3.68237 3.74143 3.76045 3.78400 3.84380 3.94063 3.96381 4.16668 4.21863 4.31923 4.36928 4.39332 4.58671 4.65539 4.70001 4.73598 4.76298 4.80157 4.88394 4.90406 4.99850 5.07202 5.13741 5.19445 5.20864 5.27586 5.34722 5.40093 5.44267 5.52900 5.66810 5.70644 5.78481 5.84626 6.33178 6.45008 6.99380 7.12056 7.14597 7.80334 8.43852 9.23942 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.001872 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.341108 B =14953.331139 C =15451.215532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.629 5.629 10 C 0.148 3.852 11 C -0.120 4.120 12 C -0.084 4.084 13 H 0.077 0.923 14 C -0.100 4.100 15 C 0.122 3.878 16 N -0.703 5.703 17 C 0.552 3.448 18 O -0.573 6.573 19 C -0.134 4.134 20 C -0.056 4.056 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.052 4.052 24 C -0.143 4.143 25 C 0.050 3.950 26 N -0.517 5.517 27 C 0.109 3.891 28 C -0.094 4.094 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.072 0.928 32 H -0.018 1.018 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.417 0.583 40 H 0.164 0.836 41 H 0.176 0.824 42 H 0.173 0.827 43 H 0.179 0.821 44 H 0.176 0.824 45 H 0.174 0.826 46 H 0.027 0.973 47 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -30.685 12.925 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.159 4.159 12 C -0.104 4.104 13 H 0.096 0.904 14 C -0.138 4.138 15 C -0.001 4.001 16 N -0.355 5.355 17 C 0.341 3.659 18 O -0.455 6.455 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.126 4.126 22 C -0.092 4.092 23 C -0.057 4.057 24 C -0.162 4.162 25 C -0.094 4.094 26 N -0.226 5.226 27 C -0.060 4.060 28 C -0.097 4.097 29 C 0.008 3.992 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.000 1.000 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.256 0.744 40 H 0.181 0.819 41 H 0.194 0.806 42 H 0.190 0.810 43 H 0.197 0.803 44 H 0.193 0.807 45 H 0.191 0.809 46 H 0.045 0.955 47 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 5.254 -30.406 11.390 32.892 hybrid contribution 0.039 1.410 0.250 1.432 sum 5.292 -28.996 11.641 31.691 Atomic orbital electron populations 1.70052 1.06094 1.25062 1.58562 1.25637 0.96717 1.00957 1.02789 0.85132 0.77153 0.78793 0.78133 1.20782 1.21667 1.20142 1.19408 0.90895 0.84114 1.42652 0.90652 1.44861 1.02984 1.00978 1.86702 1.21778 0.83870 0.95724 0.96338 1.22870 0.97882 0.94951 1.00181 1.22007 0.94722 0.93856 0.99780 0.90431 1.21635 0.98255 0.95207 0.98659 1.21364 0.98267 0.86656 0.93860 1.45763 1.37314 1.26921 1.25517 1.18501 0.79620 0.82469 0.85274 1.90595 1.52970 1.75158 1.26796 1.19791 1.01348 0.95733 0.96981 1.21906 0.96325 0.98342 0.90925 1.21414 0.97277 0.92687 1.01258 1.21657 0.94156 0.99891 0.93462 1.18554 0.97527 0.94112 0.95539 1.22335 0.96320 0.99919 0.97609 1.22800 0.99318 0.95506 0.91745 1.67560 1.14711 1.03201 1.37087 1.24296 0.90395 0.96412 0.94868 1.18984 0.98440 0.96157 0.96147 1.21579 0.95332 0.85080 0.97231 0.94313 0.91048 1.00046 0.89541 0.91166 0.90379 0.88069 0.91677 0.93035 0.74409 0.81888 0.80650 0.80960 0.80334 0.80717 0.80930 0.95515 0.97294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.32 10.09 21.65 0.22 -57.11 16 2 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 3 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -14.01 10.27 84.03 0.86 -13.14 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -33.28 3.39 -691.99 -2.35 -35.63 16 10 C 0.15 7.32 5.89 86.86 0.51 7.83 16 11 C -0.12 -4.14 6.54 31.99 0.21 -3.93 16 12 C -0.08 -2.60 2.95 -9.60 -0.03 -2.63 16 13 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.10 -2.08 4.73 30.59 0.14 -1.93 16 15 C 0.12 2.79 5.54 86.38 0.48 3.27 16 16 N -0.70 -12.89 5.51 -466.24 -2.57 -15.45 16 17 C 0.55 13.30 7.73 86.70 0.67 13.97 16 18 O -0.57 -18.76 13.48 -3.98 -0.05 -18.81 16 19 C -0.13 -2.58 5.90 -19.89 -0.12 -2.69 16 20 C -0.06 -0.57 9.51 22.56 0.21 -0.35 16 21 C -0.11 -0.65 9.93 22.01 0.22 -0.43 16 22 C -0.07 -0.59 9.79 22.34 0.22 -0.37 16 23 C -0.05 -0.82 5.74 -21.30 -0.12 -0.94 16 24 C -0.14 -1.90 9.88 22.41 0.22 -1.68 16 25 C 0.05 0.91 11.07 84.13 0.93 1.85 16 26 N -0.52 -13.83 10.30 -195.72 -2.02 -15.85 16 27 C 0.11 3.07 10.49 85.23 0.89 3.96 16 28 C -0.09 -2.13 5.76 -21.14 -0.12 -2.25 16 29 C 0.13 5.52 6.10 86.73 0.53 6.05 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.07 4.02 5.87 -2.39 -0.01 4.01 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.29 8.05 -2.38 -0.02 2.27 16 35 H 0.08 1.58 8.00 -2.39 -0.02 1.56 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.45 7.58 -2.39 -0.02 1.43 16 39 H 0.42 4.31 6.54 -92.71 -0.61 3.70 16 40 H 0.16 0.56 6.42 -2.91 -0.02 0.54 16 41 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.17 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.18 0.81 8.06 -2.91 -0.02 0.78 16 44 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.17 5.59 4.98 -2.93 -0.01 5.57 16 46 H 0.03 1.09 7.73 -2.39 -0.02 1.07 16 47 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -82.27 379.37 1.83 -80.45 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.39 Total: 10.66 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 6.18 Total: 3.06 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -6.71 Total: -124.03 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -82.27 1.83 -80.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481461115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.410 kcal (2) G-P(sol) polarization free energy of solvation -82.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds