Wall clock time and date at job start Sat Apr 11 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48501 * 109.46882 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47349 * 299.99441 * 3 2 1 6 6 H 1.48494 * 109.47266 * 59.99946 * 3 2 1 7 7 C 1.38808 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99892 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00208 * 185.13515 * 9 7 2 11 11 C 1.52996 * 110.01662 * 55.41944 * 10 9 7 12 12 N 1.46495 * 109.47424 * 59.23764 * 11 10 9 13 13 C 1.34780 * 120.00121 * 184.90762 * 12 11 10 14 14 O 1.21584 * 120.00042 * 359.97438 * 13 12 11 15 15 C 1.47554 * 119.99588 * 180.02562 * 13 12 11 16 16 C 1.38685 * 120.39197 * 354.34120 * 15 13 12 17 17 C 1.38973 * 120.53711 * 179.72751 * 16 15 13 18 18 C 1.36204 * 121.23672 * 0.24607 * 17 16 15 19 19 C 1.40708 * 120.20404 * 0.02562 * 18 17 16 20 20 N 1.33687 * 120.95559 * 180.02562 * 19 18 17 21 21 C 1.31063 * 121.34699 * 179.97438 * 20 19 18 22 22 C 1.39332 * 121.71047 * 0.02803 * 21 20 19 23 23 C 1.36675 * 119.86727 * 359.97438 * 22 21 20 24 24 C 1.40475 * 118.16569 * 359.97438 * 23 22 21 25 25 C 1.54265 * 110.07068 * 176.83731 * 10 9 7 26 26 C 1.54893 * 104.19661 * 95.69807 * 25 10 9 27 27 C 1.54888 * 102.74899 * 37.93720 * 26 25 10 28 28 C 1.53875 * 110.02872 * 294.02470 * 10 9 7 29 29 H 0.97012 * 120.00178 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99514 * 5.12887 * 9 7 2 31 31 H 1.09004 * 109.47053 * 299.23191 * 11 10 9 32 32 H 1.08999 * 109.47305 * 179.24284 * 11 10 9 33 33 H 0.97001 * 119.99815 * 4.90234 * 12 11 10 34 34 H 1.08003 * 119.73313 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.37905 * 180.27476 * 17 16 15 36 36 H 1.07998 * 119.89882 * 180.02562 * 18 17 16 37 37 H 1.08001 * 119.14242 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.06894 * 179.97438 * 22 21 20 39 39 H 1.07994 * 120.91872 * 179.97438 * 23 22 21 40 40 H 1.09007 * 110.48397 * 214.37233 * 25 10 9 41 41 H 1.08994 * 110.48656 * 337.01574 * 25 10 9 42 42 H 1.08996 * 110.75273 * 279.62727 * 26 25 10 43 43 H 1.08998 * 110.75529 * 156.25170 * 26 25 10 44 44 H 1.09003 * 110.48944 * 203.38100 * 27 26 25 45 45 H 1.09000 * 110.48397 * 80.73960 * 27 26 25 46 46 H 1.09001 * 110.03292 * 359.95660 * 28 10 9 47 47 H 1.09010 * 110.02853 * 121.38275 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0536 -3.6542 0.1147 11 6 2.9268 -3.6448 1.3709 12 7 2.0818 -3.4497 2.5516 13 6 2.6453 -3.3083 3.7677 14 8 3.8550 -3.3431 3.8850 15 6 1.7941 -3.1123 4.9569 16 6 0.4230 -2.9553 4.8202 17 6 -0.3823 -2.7762 5.9386 18 6 0.1478 -2.7448 7.1929 19 6 1.5344 -2.8941 7.3793 20 7 2.0706 -2.8662 8.6036 21 6 3.3610 -3.0050 8.7862 22 6 4.2364 -3.1875 7.7176 23 6 3.7523 -3.2256 6.4401 24 6 2.3683 -3.0773 6.2507 25 6 1.0600 -4.8330 0.1704 26 6 0.9743 -5.3272 -1.2950 27 6 2.4339 -5.1791 -1.7916 28 6 2.9270 -3.8742 -1.1329 29 1 -0.4851 0.8401 -0.0004 30 1 0.3584 -2.3897 -0.0749 31 1 3.6509 -2.8328 1.3040 32 1 3.4537 -4.5954 1.4543 33 1 1.1167 -3.4222 2.4581 34 1 -0.0233 -2.9772 3.8369 35 1 -1.4484 -2.6603 5.8108 36 1 -0.4982 -2.6047 8.0469 37 1 3.7560 -2.9771 9.7910 38 1 5.2954 -3.2988 7.8985 39 1 4.4155 -3.3658 5.5993 40 1 1.4412 -5.6229 0.8177 41 1 0.0838 -4.4931 0.5162 42 1 0.3025 -4.6962 -1.8767 43 1 0.6572 -6.3694 -1.3333 44 1 2.4603 -5.0917 -2.8778 45 1 3.0370 -6.0248 -1.4613 46 1 2.8086 -3.0393 -1.8236 47 1 3.9732 -3.9743 -0.8433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482225719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:29 Heat of formation + Delta-G solvation = 29.897885 kcal Electronic energy + Delta-G solvation = -29486.005369 eV Core-core repulsion = 25633.534067 eV Total energy + Delta-G solvation = -3852.471302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00473 -39.39294 -38.20152 -36.87854 -34.30361 -33.42346 -33.25142 -30.96163 -30.55751 -30.05173 -28.37624 -27.76164 -25.05263 -24.32631 -23.46759 -23.32207 -22.53360 -20.67652 -20.02117 -18.74317 -18.10840 -17.55701 -17.09392 -16.77286 -16.07924 -15.79449 -15.27527 -14.92200 -14.77921 -14.70922 -14.18651 -14.14031 -13.95854 -13.70273 -13.27995 -13.23272 -12.99058 -12.76398 -12.59117 -12.12731 -12.08976 -11.66030 -11.56644 -11.35352 -11.07726 -10.85452 -10.76147 -10.65789 -10.57203 -10.45996 -10.38784 -10.16824 -10.02312 -9.86241 -9.69609 -9.11974 -8.96114 -8.83727 -8.65265 -8.22004 -7.06681 -5.85647 -3.14786 0.16373 0.79487 1.78992 2.69992 3.38525 3.39067 3.46968 3.47110 3.52104 4.15965 4.21793 4.52687 4.67075 4.72344 4.80793 4.93692 5.01705 5.03254 5.07193 5.12333 5.16966 5.33688 5.42640 5.50341 5.62276 5.68544 5.78165 5.83203 5.88855 5.91108 5.94566 6.02684 6.06734 6.12727 6.17969 6.24649 6.25513 6.33571 6.34998 6.48545 6.55442 6.60136 6.66212 6.74796 6.77144 6.92705 7.05548 7.67654 7.84522 7.89891 8.32796 8.53846 9.45365 9.98146 10.33714 11.36327 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003715 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.171254 B = 7534.395076 C = 8599.285435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.189 3.811 11 C 0.119 3.881 12 N -0.688 5.688 13 C 0.557 3.443 14 O -0.550 6.550 15 C -0.105 4.105 16 C -0.071 4.071 17 C -0.106 4.106 18 C -0.074 4.074 19 C 0.117 3.883 20 N -0.481 5.481 21 C 0.128 3.872 22 C -0.186 4.186 23 C -0.057 4.057 24 C -0.067 4.067 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.132 4.132 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.402 0.598 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.180 0.820 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 -11.316 9.707 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.006 4.006 12 N -0.336 5.336 13 C 0.344 3.656 14 O -0.431 6.431 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.126 4.126 18 C -0.093 4.093 19 C -0.004 4.004 20 N -0.189 5.189 21 C -0.044 4.044 22 C -0.206 4.206 23 C -0.082 4.082 24 C -0.069 4.069 25 C -0.164 4.164 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.172 4.172 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.238 0.762 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.197 0.803 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.717 -11.058 10.409 15.283 hybrid contribution 0.267 1.131 -0.758 1.387 sum 1.984 -9.928 9.651 13.987 Atomic orbital electron populations 1.69649 1.04984 1.25543 1.57658 1.24663 0.95404 0.97467 1.02755 0.86239 0.79064 0.84514 0.77154 1.20549 1.21896 1.21942 1.19123 0.91026 0.83777 1.42503 0.91223 1.42536 1.05999 0.99391 1.87444 1.20465 0.91177 0.87333 0.91391 1.21985 0.93805 1.00214 0.84633 1.45667 1.11135 1.70756 1.06066 1.18006 0.87410 0.77022 0.83186 1.90499 1.14442 1.52788 1.85374 1.19985 0.93918 1.04140 0.92848 1.21559 0.92436 0.95155 0.99845 1.20861 1.00709 0.99292 0.91748 1.20947 0.92645 0.97756 0.97958 1.18835 0.94190 0.99170 0.88226 1.68021 1.14074 1.13738 1.23051 1.22949 0.88784 0.93215 0.99481 1.22024 1.01569 1.03305 0.93654 1.22727 0.95082 0.91042 0.99353 1.18651 0.94693 1.00834 0.92765 1.22618 0.99548 0.97372 0.96886 1.22411 0.97114 0.99835 0.96302 1.22308 0.96126 0.97802 0.99606 1.22725 0.98565 0.97501 0.98454 0.93603 0.78111 0.90970 0.92785 0.76182 0.84498 0.84479 0.84515 0.82633 0.84616 0.80345 0.91692 0.91470 0.91293 0.92524 0.92420 0.92539 0.90124 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.23 -5.88 8.61 -15.06 -0.13 -6.01 16 8 H 0.07 1.79 7.20 -52.48 -0.38 1.41 16 9 N -0.71 -15.38 4.81 -46.20 -0.22 -15.60 16 10 C 0.19 3.24 0.68 -130.70 -0.09 3.15 16 11 C 0.12 2.09 3.97 -4.05 -0.02 2.07 16 12 N -0.69 -11.61 5.17 -61.35 -0.32 -11.92 16 13 C 0.56 9.84 7.73 -12.46 -0.10 9.74 16 14 O -0.55 -10.75 13.40 5.29 0.07 -10.68 16 15 C -0.11 -1.67 5.90 -104.66 -0.62 -2.29 16 16 C -0.07 -0.97 9.52 -39.14 -0.37 -1.34 16 17 C -0.11 -1.25 9.92 -40.04 -0.40 -1.65 16 18 C -0.07 -0.93 9.96 -39.38 -0.39 -1.32 16 19 C 0.12 1.73 6.60 -84.88 -0.56 1.17 16 20 N -0.48 -6.79 10.34 -10.99 -0.11 -6.90 16 21 C 0.13 1.50 11.15 -17.47 -0.19 1.31 16 22 C -0.19 -2.22 10.03 -39.74 -0.40 -2.61 16 23 C -0.06 -0.85 9.29 -39.30 -0.37 -1.21 16 24 C -0.07 -1.05 5.76 -106.53 -0.61 -1.67 16 25 C -0.13 -1.80 5.36 -25.07 -0.13 -1.93 16 26 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 27 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 28 C -0.13 -2.17 5.99 -25.61 -0.15 -2.32 16 29 H 0.25 7.05 8.31 -40.81 -0.34 6.71 16 30 H 0.38 8.90 7.48 -40.82 -0.31 8.59 16 31 H 0.07 1.48 7.21 -51.93 -0.37 1.10 16 32 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.40 6.37 6.03 -40.82 -0.25 6.12 16 34 H 0.14 1.73 6.42 -52.48 -0.34 1.39 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.18 2.87 4.95 -52.51 -0.26 2.61 16 40 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 41 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 47 H 0.05 0.82 7.67 -51.92 -0.40 0.42 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -30.36 378.76 -10.59 -40.95 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -6.44 Total: 15.63 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.97 Total: -8.75 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.07 Total: -59.83 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.36 -10.59 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482225719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.843 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds