Wall clock time and date at job start Sat Apr 11 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00303 * 2 1 4 4 H 1.48498 * 109.47338 * 270.00323 * 3 2 1 5 5 H 1.48502 * 109.47474 * 30.00322 * 3 2 1 6 6 H 1.48507 * 109.47181 * 150.00305 * 3 2 1 7 7 C 1.38820 * 119.99393 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99554 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00180 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47136 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.81803 * 51.66717 * 11 10 9 13 13 C 1.54896 * 110.75632 * 288.32973 * 11 10 9 14 14 C 1.54267 * 104.19688 * 203.74689 * 13 11 10 15 15 C 1.53876 * 106.59641 * 23.60606 * 14 13 11 16 16 C 1.54261 * 106.60102 * 0.02562 * 15 14 13 17 17 H 1.08997 * 110.49118 * 95.19456 * 16 15 14 18 18 N 1.46502 * 110.48443 * 217.70789 * 16 15 14 19 19 C 1.34774 * 119.99963 * 273.54484 * 18 16 15 20 20 O 1.21562 * 119.99863 * 359.97438 * 19 18 16 21 21 C 1.47773 * 119.99882 * 179.97438 * 19 18 16 22 22 C 1.40627 * 119.80470 * 359.97438 * 21 19 18 23 23 C 1.35705 * 120.91997 * 180.02562 * 22 21 19 24 24 C 1.40753 * 120.11506 * 359.97438 * 23 22 21 25 25 N 1.33647 * 120.83500 * 180.02562 * 24 23 22 26 26 C 1.31127 * 121.39074 * 179.97438 * 25 24 23 27 27 C 1.39314 * 121.77361 * 0.26425 * 26 25 24 28 28 C 1.36586 * 119.90158 * 359.49589 * 27 26 25 29 29 C 1.40892 * 118.15613 * 0.45894 * 28 27 26 30 30 C 1.38547 * 119.80328 * 179.97438 * 21 19 18 31 31 H 0.97008 * 119.99758 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99975 * 0.02562 * 9 7 2 33 33 H 1.09005 * 109.46217 * 60.00547 * 10 9 7 34 34 H 1.08993 * 109.47367 * 300.00867 * 10 9 7 35 35 H 1.09003 * 110.48308 * 85.06604 * 13 11 10 36 36 H 1.08998 * 110.48595 * 322.42602 * 13 11 10 37 37 H 1.09002 * 110.03039 * 264.32987 * 14 13 11 38 38 H 1.08994 * 110.03393 * 142.89545 * 14 13 11 39 39 H 1.08997 * 110.03682 * 240.71493 * 15 14 13 40 40 H 1.09005 * 110.02743 * 119.28576 * 15 14 13 41 41 H 0.97001 * 120.00008 * 93.54271 * 18 16 15 42 42 H 1.08003 * 119.54431 * 359.96876 * 22 21 19 43 43 H 1.08001 * 119.94124 * 180.02562 * 23 22 21 44 44 H 1.08002 * 119.10990 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.05176 * 179.73964 * 27 26 25 46 46 H 1.07993 * 120.92454 * 180.25311 * 28 27 26 47 47 H 1.08001 * 120.29713 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0021 12 1 0.3311 -4.7029 -0.8009 13 6 0.3610 -4.9418 1.3731 14 6 -0.0921 -6.4150 1.4370 15 6 0.8249 -7.1988 0.4816 16 6 1.8036 -6.1746 -0.1290 17 1 2.7370 -6.1564 0.4337 18 7 2.0611 -6.4878 -1.5368 19 6 3.0340 -7.3604 -1.8660 20 8 3.6981 -7.8873 -0.9948 21 6 3.2933 -7.6767 -3.2860 22 6 2.5221 -7.0652 -4.2904 23 6 2.7405 -7.3395 -5.6014 24 6 3.7501 -8.2464 -5.9745 25 7 3.9779 -8.5267 -7.2612 26 6 4.9158 -9.3694 -7.6211 27 6 5.7175 -10.0184 -6.6846 28 6 5.5419 -9.7744 -5.3522 29 6 4.5335 -8.8679 -4.9696 30 6 4.2947 -8.5740 -3.6199 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3880 -0.0005 33 1 2.6850 -3.7150 0.8879 34 1 2.6839 -3.7143 -0.8920 35 1 -0.5001 -4.2753 1.4220 36 1 1.0607 -4.7226 2.1796 37 1 -1.1294 -6.5010 1.1131 38 1 0.0150 -6.7949 2.4529 39 1 0.2327 -7.6651 -0.3057 40 1 1.3771 -7.9590 1.0341 41 1 1.5313 -6.0670 -2.2320 42 1 1.7445 -6.3681 -4.0147 43 1 2.1390 -6.8604 -6.3598 44 1 5.0679 -9.5692 -8.6715 45 1 6.4793 -10.7105 -7.0118 46 1 6.1567 -10.2652 -4.6124 47 1 4.8858 -9.0431 -2.8472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482687014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:37 Heat of formation + Delta-G solvation = -2.232655 kcal Electronic energy + Delta-G solvation = -28059.912771 eV Core-core repulsion = 24206.048184 eV Total energy + Delta-G solvation = -3853.864587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.97618 -41.01437 -39.29928 -37.68759 -36.32173 -34.92910 -34.46135 -33.31256 -31.81689 -31.11707 -30.21025 -28.71387 -26.45101 -25.63351 -24.87945 -23.92365 -23.17372 -22.32222 -21.49981 -20.89226 -19.51728 -19.09302 -18.71067 -18.07037 -17.37466 -16.88712 -16.65729 -16.22448 -15.86542 -15.67252 -15.50836 -15.28308 -15.15965 -15.06229 -15.00108 -14.68527 -14.48092 -14.31238 -14.00126 -13.58668 -13.16882 -13.12941 -13.06916 -12.82771 -12.69829 -12.50024 -12.38286 -12.15142 -12.05632 -11.89005 -11.62153 -11.61857 -11.59711 -11.29530 -11.11733 -10.93122 -10.52857 -10.17045 -9.83638 -9.36028 -8.99878 -7.95931 -5.24024 -0.82855 -0.36632 0.85398 1.37403 1.46677 1.47694 1.56270 2.05805 2.26630 2.54928 3.06200 3.24782 3.36949 3.43397 3.53138 3.60818 3.66390 3.72753 3.88789 3.95034 3.99151 4.03484 4.16861 4.26773 4.41771 4.46829 4.50672 4.51625 4.56968 4.66500 4.71044 4.75367 4.86038 4.93311 4.97155 5.00249 5.03734 5.12776 5.16578 5.20337 5.23820 5.24878 5.30519 5.46484 5.46532 5.51236 5.57747 5.73620 6.26598 6.45764 6.87154 7.10863 7.33683 8.08544 8.33936 9.27207 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.002471 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.831125 B =11327.290136 C =13019.612239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.163 3.837 11 C -0.092 4.092 12 H 0.087 0.913 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.153 3.847 17 H 0.077 0.923 18 N -0.705 5.705 19 C 0.560 3.440 20 O -0.574 6.574 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.106 4.106 24 C 0.124 3.876 25 N -0.510 5.510 26 C 0.139 3.861 27 C -0.171 4.171 28 C -0.052 4.052 29 C -0.131 4.131 30 C -0.026 4.026 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.013 0.987 34 H 0.014 0.986 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.411 0.589 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.192 0.808 45 H 0.178 0.822 46 H 0.167 0.833 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -25.024 -12.173 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.036 3.964 11 C -0.111 4.111 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.095 0.905 18 N -0.356 5.356 19 C 0.348 3.652 20 O -0.455 6.455 21 C -0.151 4.151 22 C -0.093 4.093 23 C -0.124 4.124 24 C 0.003 3.997 25 N -0.219 5.219 26 C -0.033 4.033 27 C -0.191 4.191 28 C -0.078 4.078 29 C -0.133 4.133 30 C -0.046 4.046 31 H 0.061 0.939 32 H 0.209 0.791 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.249 0.751 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.209 0.791 45 H 0.195 0.805 46 H 0.184 0.816 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.929 -24.799 -12.093 28.447 hybrid contribution 0.288 1.155 0.462 1.277 sum 7.217 -23.644 -11.630 27.320 Atomic orbital electron populations 1.69799 1.06393 1.26077 1.59335 1.25504 0.96415 1.00849 1.03634 0.85190 0.77678 0.79727 0.77469 1.21338 1.21958 1.19823 1.19573 0.91298 0.85544 1.41419 0.91283 1.42467 1.05627 1.00780 1.89294 1.20734 0.93625 0.84959 0.97079 1.22414 0.97057 0.92175 0.99448 0.89449 1.22251 0.99898 0.97181 0.95585 1.22062 0.99578 0.93396 0.99951 1.22445 0.97039 0.97468 0.99285 1.21773 0.98548 0.93617 0.81244 0.90525 1.45924 1.36142 1.44425 1.09066 1.18434 0.79457 0.78740 0.88549 1.90740 1.49986 1.53475 1.51305 1.19908 1.00635 1.02150 0.92426 1.21105 0.98403 0.97979 0.91854 1.20879 0.97396 0.97525 0.96603 1.19277 0.95473 0.95936 0.89060 1.68128 1.19715 1.16723 1.17341 1.23752 0.88285 0.88787 1.02479 1.22335 1.01877 1.01866 0.92981 1.21959 0.94095 0.93404 0.98342 1.18996 0.99628 1.00888 0.93752 1.21557 0.94313 0.93491 0.95216 0.93928 0.79082 0.96940 0.96819 0.91993 0.92292 0.90432 0.90636 0.90456 0.91478 0.75122 0.83083 0.83108 0.79085 0.80463 0.81578 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.25 -13.91 9.99 84.04 0.84 -13.07 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -37.29 5.52 -343.45 -1.90 -39.18 16 10 C 0.16 6.55 5.70 86.38 0.49 7.04 16 11 C -0.09 -2.80 2.50 -9.49 -0.02 -2.82 16 12 H 0.09 2.59 8.02 -2.39 -0.02 2.57 16 13 C -0.11 -3.22 6.20 31.67 0.20 -3.02 16 14 C -0.11 -2.47 6.80 31.32 0.21 -2.26 16 15 C -0.12 -2.82 6.53 31.32 0.20 -2.61 16 16 C 0.15 4.14 2.60 46.07 0.12 4.26 16 17 H 0.08 2.40 7.57 -2.39 -0.02 2.38 16 18 N -0.70 -17.28 5.06 -440.36 -2.23 -19.51 16 19 C 0.56 15.20 7.76 86.77 0.67 15.87 16 20 O -0.57 -19.18 16.02 -3.91 -0.06 -19.24 16 21 C -0.15 -3.42 5.87 -20.10 -0.12 -3.54 16 22 C -0.07 -1.44 9.44 22.27 0.21 -1.23 16 23 C -0.11 -2.13 9.95 22.30 0.22 -1.91 16 24 C 0.12 2.67 6.61 40.35 0.27 2.94 16 25 N -0.51 -10.28 10.33 -188.45 -1.95 -12.22 16 26 C 0.14 1.75 11.15 85.06 0.95 2.69 16 27 C -0.17 -1.59 10.03 22.14 0.22 -1.37 16 28 C -0.05 -0.67 9.89 22.53 0.22 -0.45 16 29 C -0.13 -2.55 5.74 -21.29 -0.12 -2.67 16 30 C -0.03 -0.56 9.35 22.82 0.21 -0.34 16 31 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 32 H 0.38 19.86 7.67 -92.70 -0.71 19.15 16 33 H 0.01 0.53 7.99 -2.38 -0.02 0.51 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.83 7.93 -2.39 -0.02 1.81 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.60 8.04 -2.39 -0.02 1.58 16 40 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.41 8.38 6.52 -92.71 -0.60 7.77 16 42 H 0.15 2.32 6.35 -2.91 -0.02 2.30 16 43 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 46 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.15 2.96 7.62 -2.91 -0.02 2.94 16 Total: -1.00 -74.23 389.25 1.11 -73.12 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -0.31 Total: 33.02 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.25 Total: -6.15 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -5.79 Total: -129.21 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.06 Total: -19.24 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -74.23 1.11 -73.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.889 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds