Wall clock time and date at job start Sat Apr 11 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21571 * 119.99872 * 0.02562 * 19 18 16 21 21 C 1.47761 * 120.00174 * 180.02562 * 19 18 16 22 22 C 1.40627 * 119.80728 * 359.72510 * 21 19 18 23 23 C 1.35698 * 120.92446 * 179.72711 * 22 21 19 24 24 C 1.40763 * 120.10935 * 0.56971 * 23 22 21 25 25 N 1.33651 * 120.82642 * 179.66762 * 24 23 22 26 26 C 1.31119 * 121.38816 * 180.02562 * 25 24 23 27 27 C 1.39310 * 121.77292 * 0.02562 * 26 25 24 28 28 C 1.36575 * 119.90449 * 359.97036 * 27 26 25 29 29 C 1.40893 * 118.16061 * 0.05013 * 28 27 26 30 30 C 1.38555 * 119.80370 * 180.02562 * 21 19 18 31 31 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 34 34 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 35 35 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 36 36 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 37 37 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 38 38 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 39 39 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 40 40 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 41 41 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 42 42 H 1.08001 * 119.53413 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.94641 * 180.26515 * 23 22 21 44 44 H 1.08004 * 119.11335 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.04850 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.92374 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.29726 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5843 -7.8311 -1.2856 21 6 5.5140 -6.5729 -0.8978 22 6 6.0583 -5.3952 -0.3551 23 6 7.3917 -5.1510 -0.4152 24 6 8.2516 -6.0756 -1.0373 25 7 9.5663 -5.8464 -1.1105 26 6 10.3772 -6.6999 -1.6879 27 6 9.9130 -7.8853 -2.2535 28 6 8.5806 -8.1826 -2.2139 29 6 7.7122 -7.2629 -1.5932 30 6 6.3333 -7.5031 -1.5169 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6843 -3.7140 -0.8921 34 1 2.6855 -3.7148 0.8878 35 1 0.8915 -4.3868 2.1270 36 1 -0.6690 -4.3894 1.2467 37 1 -0.6897 -6.7942 1.0686 38 1 0.0133 -6.5540 2.7022 39 1 1.3769 -8.0252 0.9010 40 1 2.2665 -6.8300 1.8939 41 1 3.6373 -5.1047 0.1645 42 1 5.4064 -4.6774 0.1205 43 1 7.7933 -4.2433 0.0105 44 1 11.4335 -6.4778 -1.7259 45 1 10.6057 -8.5683 -2.7225 46 1 8.2027 -9.0967 -2.6476 47 1 5.9130 -8.4045 -1.9379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482687016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:45 Heat of formation + Delta-G solvation = 28.161019 kcal Electronic energy + Delta-G solvation = -28542.841284 eV Core-core repulsion = 24690.294666 eV Total energy + Delta-G solvation = -3852.546618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21668 -40.14478 -38.28963 -36.84775 -34.70610 -33.97970 -33.63859 -31.49276 -31.04068 -30.35805 -28.43127 -27.69333 -24.97539 -24.27365 -24.15241 -22.72053 -22.45176 -21.36057 -20.58490 -19.19361 -18.71796 -18.08164 -17.33423 -17.13094 -16.24657 -16.03548 -15.33808 -15.10219 -14.85198 -14.64515 -14.47841 -14.41895 -14.24887 -13.84068 -13.70693 -13.66026 -13.40714 -13.37864 -13.05892 -12.40103 -12.30614 -11.98963 -11.75391 -11.69999 -11.29520 -10.93480 -10.92655 -10.80549 -10.62637 -10.58844 -10.47729 -10.33360 -10.02841 -9.98986 -9.84189 -9.21626 -9.18527 -9.02271 -8.89264 -8.57760 -7.05430 -6.13939 -3.14231 -0.07806 0.35592 1.60007 2.18827 3.09516 3.16114 3.49874 3.53166 3.70603 3.82321 3.92284 4.24324 4.34336 4.43785 4.51585 4.61108 4.68750 4.71160 4.73004 4.80139 4.90300 5.01054 5.12527 5.35217 5.43126 5.48403 5.51002 5.57958 5.59386 5.63487 5.66142 5.69969 5.75868 5.81383 5.94693 5.96006 5.98725 6.01828 6.07123 6.15837 6.19699 6.32127 6.42597 6.45262 6.50499 6.60155 6.68785 7.47611 7.55157 7.75211 8.14247 8.72384 9.18551 10.04970 10.19723 11.34550 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.003058 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.655251 B = 9153.751856 C =11717.798795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.162 3.838 11 C -0.110 4.110 12 H 0.082 0.918 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.091 0.909 18 N -0.713 5.713 19 C 0.557 3.443 20 O -0.543 6.543 21 C -0.130 4.130 22 C -0.073 4.073 23 C -0.095 4.095 24 C 0.143 3.857 25 N -0.476 5.476 26 C 0.138 3.862 27 C -0.182 4.182 28 C -0.046 4.046 29 C -0.115 4.115 30 C -0.028 4.028 31 H 0.255 0.745 32 H 0.368 0.632 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.407 0.593 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.161 0.839 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.448 -19.024 -0.986 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.241 4.241 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.034 3.966 11 C -0.129 4.129 12 H 0.100 0.900 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.109 0.891 18 N -0.367 5.367 19 C 0.344 3.656 20 O -0.422 6.422 21 C -0.133 4.133 22 C -0.094 4.094 23 C -0.113 4.113 24 C 0.022 3.978 25 N -0.184 5.184 26 C -0.034 4.034 27 C -0.202 4.202 28 C -0.072 4.072 29 C -0.117 4.117 30 C -0.047 4.047 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.178 0.822 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.395 -17.221 -0.911 23.117 hybrid contribution -0.128 -2.023 -0.259 2.044 sum 15.267 -19.244 -1.170 24.592 Atomic orbital electron populations 1.70890 1.06050 1.28427 1.53394 1.25772 0.97042 1.01000 1.00304 0.83258 0.74259 0.75634 0.75892 1.21010 1.22215 1.22228 1.20003 0.91977 0.85801 1.48731 0.91798 1.42317 1.04895 1.00662 1.90583 1.20628 0.93325 0.85240 0.97373 1.22253 0.98042 0.93626 0.99024 0.89983 1.22367 1.00625 0.95370 0.96646 1.22482 0.96831 0.96080 1.00777 1.22765 0.97842 0.99441 0.96989 1.21679 0.78861 0.96025 0.99020 0.89062 1.46333 1.08138 1.23776 1.58455 1.18189 0.86005 0.83351 0.78007 1.90751 1.76215 1.27306 1.47895 1.19993 0.93676 0.96522 1.03073 1.21042 0.95502 0.95742 0.97090 1.20727 0.92143 0.99290 0.99149 1.19027 0.90438 0.92599 0.95753 1.68094 1.03163 1.31192 1.15958 1.23058 0.99934 0.89388 0.91042 1.21904 0.96512 0.99289 1.02475 1.21566 0.93257 0.98009 0.94364 1.18807 0.94555 0.96478 1.01846 1.21423 0.90953 0.98390 0.93968 0.93383 0.79872 0.96021 0.96505 0.90973 0.91340 0.91464 0.91506 0.91342 0.91251 0.75337 0.84628 0.83854 0.82206 0.84281 0.84033 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.84 13.70 55.49 0.76 -28.08 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.63 29.92 -169.99 -5.09 20.55 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.33 -9.23 9.99 -15.06 -0.15 -9.38 16 8 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.74 -17.99 5.45 -59.91 -0.33 -18.31 16 10 C 0.16 3.07 4.19 -4.04 -0.02 3.06 16 11 C -0.11 -1.71 2.96 -89.50 -0.26 -1.98 16 12 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 13 C -0.11 -1.63 6.08 -25.08 -0.15 -1.78 16 14 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 15 C -0.13 -1.63 6.53 -25.08 -0.16 -1.79 16 16 C 0.15 2.07 3.22 -66.81 -0.22 1.86 16 17 H 0.09 1.34 7.56 -51.93 -0.39 0.95 16 18 N -0.71 -9.74 4.34 -53.69 -0.23 -9.97 16 19 C 0.56 7.97 7.76 -12.37 -0.10 7.87 16 20 O -0.54 -9.07 15.96 5.30 0.08 -8.99 16 21 C -0.13 -1.62 5.87 -104.99 -0.62 -2.24 16 22 C -0.07 -0.85 9.44 -39.59 -0.37 -1.22 16 23 C -0.09 -1.09 9.95 -39.54 -0.39 -1.48 16 24 C 0.14 1.71 6.61 -84.78 -0.56 1.15 16 25 N -0.48 -5.43 10.33 -10.92 -0.11 -5.54 16 26 C 0.14 1.13 11.14 -17.46 -0.19 0.93 16 27 C -0.18 -1.22 10.03 -39.78 -0.40 -1.62 16 28 C -0.05 -0.37 9.89 -39.18 -0.39 -0.75 16 29 C -0.11 -1.24 5.74 -106.82 -0.61 -1.85 16 30 C -0.03 -0.31 9.35 -38.74 -0.36 -0.67 16 31 H 0.25 7.66 6.77 -40.82 -0.28 7.38 16 32 H 0.37 9.21 6.38 -40.82 -0.26 8.95 16 33 H 0.02 0.43 7.42 -51.93 -0.39 0.04 16 34 H 0.02 0.32 7.10 -51.93 -0.37 -0.05 16 35 H 0.07 1.14 7.76 -51.93 -0.40 0.73 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 41 H 0.41 5.32 3.88 -40.82 -0.16 5.17 16 42 H 0.14 1.42 6.35 -52.49 -0.33 1.08 16 43 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 46 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.15 1.51 7.62 -52.48 -0.40 1.11 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -34.28 381.85 -10.79 -45.07 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.41 Total: 12.39 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -5.23 Total: -12.87 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.09 Total: -61.90 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.55 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.28 -10.79 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.230 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds