Wall clock time and date at job start Sat Apr 11 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46793 * 120.00355 * 3 2 1 6 6 H 1.48500 * 109.47000 * 240.00448 * 3 2 1 7 7 C 1.38811 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99665 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99567 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46932 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.01604 * 53.61530 * 11 10 9 13 13 C 1.54259 * 110.03578 * 292.17092 * 11 10 9 14 14 C 1.54888 * 104.19544 * 217.10740 * 13 11 10 15 15 C 1.54888 * 102.74928 * 37.94077 * 14 13 11 16 16 C 1.53874 * 110.03179 * 175.00163 * 11 10 9 17 17 H 1.09005 * 110.03346 * 238.57542 * 16 11 10 18 18 N 1.46505 * 110.03223 * 359.97438 * 16 11 10 19 19 C 1.34771 * 120.00284 * 204.99689 * 18 16 11 20 20 O 1.21571 * 119.99872 * 0.02562 * 19 18 16 21 21 C 1.47761 * 120.00174 * 180.02562 * 19 18 16 22 22 C 1.40627 * 119.80728 * 359.72510 * 21 19 18 23 23 C 1.35698 * 120.92446 * 179.72711 * 22 21 19 24 24 C 1.40763 * 120.10935 * 0.56971 * 23 22 21 25 25 N 1.33651 * 120.82642 * 179.66762 * 24 23 22 26 26 C 1.31119 * 121.38816 * 180.02562 * 25 24 23 27 27 C 1.39310 * 121.77292 * 0.02562 * 26 25 24 28 28 C 1.36575 * 119.90449 * 359.97036 * 27 26 25 29 29 C 1.40893 * 118.16061 * 0.05013 * 28 27 26 30 30 C 1.38555 * 119.80370 * 180.02562 * 21 19 18 31 31 H 0.97005 * 119.99717 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00607 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47306 * 300.00481 * 10 9 7 34 34 H 1.08997 * 109.46860 * 60.00305 * 10 9 7 35 35 H 1.09003 * 110.48546 * 335.78245 * 13 11 10 36 36 H 1.08999 * 110.48909 * 98.42560 * 13 11 10 37 37 H 1.08998 * 110.75677 * 279.62374 * 14 13 11 38 38 H 1.09001 * 110.75711 * 156.25553 * 14 13 11 39 39 H 1.09002 * 110.48146 * 203.37818 * 15 14 13 40 40 H 1.08999 * 110.59917 * 80.79403 * 15 14 13 41 41 H 0.96998 * 119.99873 * 25.00760 * 18 16 11 42 42 H 1.08001 * 119.53413 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.94641 * 180.26515 * 23 22 21 44 44 H 1.08004 * 119.11335 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.04850 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.92374 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.29726 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6966 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3588 -4.7083 -0.8245 13 6 0.3065 -4.8663 1.3422 14 6 0.1442 -6.3787 1.6344 15 6 1.4893 -6.9682 1.1423 16 6 1.8160 -6.1561 -0.1279 17 1 1.4752 -6.6937 -1.0128 18 7 3.2585 -5.9142 -0.2123 19 6 4.0591 -6.8166 -0.8132 20 8 3.5843 -7.8311 -1.2856 21 6 5.5140 -6.5729 -0.8978 22 6 6.0583 -5.3952 -0.3551 23 6 7.3917 -5.1510 -0.4152 24 6 8.2516 -6.0756 -1.0373 25 7 9.5663 -5.8464 -1.1105 26 6 10.3772 -6.6999 -1.6879 27 6 9.9130 -7.8853 -2.2535 28 6 8.5806 -8.1826 -2.2139 29 6 7.7122 -7.2629 -1.5932 30 6 6.3333 -7.5031 -1.5169 31 1 -0.4850 -0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6843 -3.7140 -0.8921 34 1 2.6855 -3.7148 0.8878 35 1 0.8915 -4.3868 2.1270 36 1 -0.6690 -4.3894 1.2467 37 1 -0.6897 -6.7942 1.0686 38 1 0.0133 -6.5540 2.7022 39 1 1.3769 -8.0252 0.9010 40 1 2.2665 -6.8300 1.8939 41 1 3.6373 -5.1047 0.1645 42 1 5.4064 -4.6774 0.1205 43 1 7.7933 -4.2433 0.0105 44 1 11.4335 -6.4778 -1.7259 45 1 10.6057 -8.5683 -2.7225 46 1 8.2027 -9.0967 -2.6476 47 1 5.9130 -8.4045 -1.9379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482687016.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:44 Heat of formation + Delta-G solvation = 7.360445 kcal Electronic energy + Delta-G solvation = -28543.743264 eV Core-core repulsion = 24690.294666 eV Total energy + Delta-G solvation = -3853.448599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04310 -41.20188 -39.44578 -37.73472 -36.57844 -34.96635 -34.48827 -33.32302 -31.85358 -31.15135 -30.02731 -28.76312 -26.20398 -25.66417 -24.93043 -24.48116 -23.24506 -22.37594 -21.66577 -20.48196 -19.81749 -19.25888 -18.80589 -18.00184 -17.30901 -17.07060 -16.50121 -16.30951 -16.11905 -15.71152 -15.62312 -15.49685 -15.36537 -15.15844 -14.98620 -14.88088 -14.52639 -14.49973 -14.01788 -13.59788 -13.16389 -13.03871 -12.88355 -12.69831 -12.61696 -12.54228 -12.31972 -12.00238 -11.90253 -11.84054 -11.77360 -11.64651 -11.58268 -11.21825 -11.15140 -10.93351 -10.54208 -10.22069 -9.87267 -9.39557 -9.11954 -8.39508 -5.33803 -0.85562 -0.40179 0.83015 1.33012 1.58730 1.68264 1.84353 2.01657 2.22229 2.70700 3.03356 3.20629 3.33850 3.40014 3.50007 3.56335 3.59754 3.69251 3.75592 3.91263 3.96157 4.00174 4.01080 4.21001 4.29877 4.39931 4.40893 4.44789 4.48986 4.54745 4.67928 4.71401 4.81019 4.83124 4.89145 4.91951 4.96668 5.00790 5.12900 5.14376 5.16305 5.21557 5.25404 5.40505 5.40928 5.47329 5.58468 5.71085 6.36220 6.49965 6.85728 7.02624 7.08883 7.99083 8.10105 9.12561 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.003058 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.655251 B = 9153.751856 C =11717.798795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.126 2.874 4 H -0.294 1.294 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.334 4.334 8 H 0.069 0.931 9 N -0.751 5.751 10 C 0.164 3.836 11 C -0.102 4.102 12 H 0.073 0.927 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.125 4.125 16 C 0.153 3.847 17 H 0.084 0.916 18 N -0.712 5.712 19 C 0.559 3.441 20 O -0.571 6.571 21 C -0.151 4.151 22 C -0.077 4.077 23 C -0.105 4.105 24 C 0.125 3.875 25 N -0.511 5.511 26 C 0.140 3.860 27 C -0.170 4.170 28 C -0.050 4.050 29 C -0.130 4.130 30 C -0.021 4.021 31 H 0.244 0.756 32 H 0.361 0.639 33 H 0.018 0.982 34 H 0.027 0.973 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.193 0.807 45 H 0.180 0.820 46 H 0.170 0.830 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.897 -20.676 -1.215 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.294 4.294 3 Si 0.950 3.050 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.396 5.396 10 C 0.038 3.962 11 C -0.122 4.122 12 H 0.091 0.909 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.048 3.952 17 H 0.102 0.898 18 N -0.365 5.365 19 C 0.348 3.652 20 O -0.452 6.452 21 C -0.154 4.154 22 C -0.097 4.097 23 C -0.124 4.124 24 C 0.004 3.996 25 N -0.220 5.220 26 C -0.032 4.032 27 C -0.189 4.189 28 C -0.076 4.076 29 C -0.132 4.132 30 C -0.041 4.041 31 H 0.055 0.945 32 H 0.194 0.806 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.249 0.751 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.210 0.790 45 H 0.197 0.803 46 H 0.187 0.813 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 17.876 -18.913 -1.132 26.048 hybrid contribution -0.697 -1.621 -0.259 1.783 sum 17.179 -20.533 -1.391 26.808 Atomic orbital electron populations 1.70996 1.07198 1.27919 1.56212 1.27159 0.97111 1.04608 1.00558 0.82656 0.73418 0.71711 0.77178 1.22043 1.20149 1.20547 1.20387 0.92461 0.87020 1.46688 0.91322 1.42515 1.04832 1.01711 1.90549 1.20751 0.93814 0.84395 0.97280 1.22148 0.97355 0.93135 0.99524 0.90861 1.22310 0.99663 0.97481 0.95405 1.22439 0.96905 0.93513 1.02076 1.22716 0.98159 0.99477 0.95966 1.21624 0.78838 0.94968 0.99775 0.89758 1.46309 1.08022 1.23824 1.58342 1.18432 0.86727 0.82815 0.77238 1.90723 1.76866 1.28391 1.49232 1.19899 0.92674 0.97675 1.05128 1.21027 0.95676 0.95650 0.97380 1.20848 0.92212 0.99749 0.99574 1.19221 0.91057 0.93128 0.96173 1.68124 1.03140 1.32870 1.17894 1.23778 1.01110 0.89176 0.89151 1.22349 0.96615 0.99017 1.00933 1.21966 0.93563 0.98349 0.93711 1.19004 0.94620 0.97029 1.02571 1.21568 0.91344 0.98133 0.93041 0.94520 0.80639 0.96410 0.95520 0.92280 0.92160 0.90263 0.89797 0.90605 0.91007 0.75124 0.84328 0.83443 0.79008 0.80254 0.81287 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.88 13.70 21.65 0.30 -60.58 16 2 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 3 Si 1.13 51.68 29.92 68.60 2.05 53.73 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.33 -18.57 9.99 84.03 0.84 -17.73 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.75 -37.24 5.45 -343.44 -1.87 -39.11 16 10 C 0.16 6.29 4.19 86.38 0.36 6.65 16 11 C -0.10 -3.20 2.96 -10.07 -0.03 -3.23 16 12 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 13 C -0.11 -3.19 6.08 31.67 0.19 -3.00 16 14 C -0.11 -2.45 6.91 31.88 0.22 -2.23 16 15 C -0.12 -2.91 6.53 31.67 0.21 -2.71 16 16 C 0.15 4.22 3.22 45.71 0.15 4.37 16 17 H 0.08 2.48 7.56 -2.38 -0.02 2.46 16 18 N -0.71 -19.54 4.34 -442.05 -1.92 -21.46 16 19 C 0.56 16.14 7.76 86.76 0.67 16.82 16 20 O -0.57 -19.16 15.96 -3.94 -0.06 -19.22 16 21 C -0.15 -3.82 5.87 -20.10 -0.12 -3.93 16 22 C -0.08 -1.82 9.44 22.26 0.21 -1.61 16 23 C -0.11 -2.47 9.95 22.30 0.22 -2.25 16 24 C 0.13 2.94 6.61 40.35 0.27 3.20 16 25 N -0.51 -11.07 10.33 -188.45 -1.95 -13.02 16 26 C 0.14 1.88 11.14 85.06 0.95 2.83 16 27 C -0.17 -1.65 10.03 22.14 0.22 -1.42 16 28 C -0.05 -0.66 9.89 22.53 0.22 -0.44 16 29 C -0.13 -2.67 5.74 -21.29 -0.12 -2.79 16 30 C -0.02 -0.47 9.35 22.82 0.21 -0.26 16 31 H 0.24 15.16 6.77 -92.70 -0.63 14.54 16 32 H 0.36 18.67 6.38 -92.71 -0.59 18.07 16 33 H 0.02 0.71 7.42 -2.39 -0.02 0.69 16 34 H 0.03 1.00 7.10 -2.39 -0.02 0.98 16 35 H 0.06 1.85 7.76 -2.39 -0.02 1.84 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 41 H 0.41 10.82 3.88 -92.71 -0.36 10.46 16 42 H 0.14 3.01 6.35 -2.91 -0.02 2.99 16 43 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 46 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 47 H 0.15 3.07 7.62 -2.91 -0.02 3.05 16 Total: -1.00 -75.07 381.85 1.89 -73.18 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: 0.20 Total: 39.73 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.14 Total: -13.23 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -5.44 Total: -134.17 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.06 Total: -19.22 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Total: -75.07 1.89 -73.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687016.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.538 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds