Wall clock time and date at job start Sat Apr 11 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.43783 * 307.54183 * 11 10 9 13 13 C 1.54890 * 110.48670 * 70.22087 * 11 10 9 14 14 C 1.54888 * 102.74996 * 156.61991 * 13 11 10 15 15 C 1.54270 * 104.19756 * 322.06245 * 14 13 11 16 16 C 1.53874 * 106.59709 * 23.60720 * 15 14 13 17 17 H 1.08998 * 110.07122 * 240.69625 * 16 15 14 18 18 N 1.46499 * 110.03422 * 119.28333 * 16 15 14 19 19 C 1.34780 * 119.99469 * 87.83420 * 18 16 15 20 20 O 1.21558 * 120.00138 * 359.97438 * 19 18 16 21 21 C 1.47771 * 119.99804 * 180.02562 * 19 18 16 22 22 C 1.40632 * 119.80157 * 359.72077 * 21 19 18 23 23 C 1.35701 * 120.91883 * 179.73426 * 22 21 19 24 24 C 1.40766 * 120.11000 * 0.56370 * 23 22 21 25 25 N 1.33647 * 120.82478 * 179.67151 * 24 23 22 26 26 C 1.31122 * 121.38861 * 180.02562 * 25 24 23 27 27 C 1.39311 * 121.77279 * 0.02562 * 26 25 24 28 28 C 1.36585 * 119.90090 * 359.97373 * 27 26 25 29 29 C 1.40886 * 118.15980 * 0.04169 * 28 27 26 30 30 C 1.38548 * 119.80569 * 180.02562 * 21 19 18 31 31 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 34 34 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 35 35 H 1.08998 * 110.75888 * 274.94005 * 13 11 10 36 36 H 1.09004 * 110.75395 * 38.30810 * 13 11 10 37 37 H 1.08998 * 110.49376 * 203.38070 * 14 13 11 38 38 H 1.09001 * 110.59695 * 80.79264 * 14 13 11 39 39 H 1.09001 * 110.03076 * 264.32096 * 15 14 13 40 40 H 1.09001 * 110.07650 * 142.91446 * 15 14 13 41 41 H 0.96991 * 120.00494 * 267.83457 * 18 16 15 42 42 H 1.07996 * 119.54229 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.94582 * 180.26512 * 23 22 21 44 44 H 1.08005 * 119.11659 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.05194 * 179.97438 * 27 26 25 46 46 H 1.08006 * 120.91780 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.29735 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3433 -4.7047 0.8074 13 6 0.3391 -4.9124 -1.3679 14 6 -0.1114 -6.3935 -1.4159 15 6 1.0600 -7.1663 -0.7751 16 6 1.8074 -6.1656 0.1237 17 1 2.8377 -6.0560 -0.2146 18 7 1.7822 -6.6244 1.5147 19 6 2.7414 -7.4561 1.9673 20 8 3.6271 -7.8257 1.2212 21 6 2.7158 -7.9195 3.3703 22 6 1.6920 -7.4854 4.2311 23 6 1.6435 -7.9009 5.5220 24 6 2.6322 -8.7691 6.0220 25 7 2.6020 -9.1821 7.2927 26 6 3.5176 -9.9903 7.7702 27 6 4.5659 -10.4587 6.9813 28 6 4.6574 -10.0763 5.6733 29 6 3.6721 -9.2075 5.1641 30 6 3.7041 -8.7739 3.8315 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6855 -3.7140 -0.8911 34 1 2.6842 -3.7148 0.8888 35 1 -0.5226 -4.2454 -1.3939 36 1 1.0253 -4.6907 -2.1853 37 1 -0.2609 -6.7137 -2.4470 38 1 -1.0240 -6.5357 -0.8371 39 1 1.7275 -7.5426 -1.5504 40 1 0.6794 -7.9938 -0.1765 41 1 1.0754 -6.3298 2.1099 42 1 0.9310 -6.8158 3.8584 43 1 0.8477 -7.5611 6.1682 44 1 3.4573 -10.3012 8.8027 45 1 5.3052 -11.1234 7.4034 46 1 5.4631 -10.4298 5.0468 47 1 4.4922 -9.1027 3.1703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482687017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:48 Heat of formation + Delta-G solvation = 20.035556 kcal Electronic energy + Delta-G solvation = -28037.129331 eV Core-core repulsion = 24184.230366 eV Total energy + Delta-G solvation = -3852.898964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25223 -40.04002 -38.18364 -36.87738 -34.53195 -33.95358 -33.58000 -31.40506 -31.07868 -30.41203 -28.60759 -27.68205 -25.14915 -24.33677 -24.18711 -22.53710 -22.11350 -21.44227 -20.12630 -19.97379 -18.48444 -18.05757 -17.32524 -17.01543 -16.34560 -16.10623 -15.26871 -14.92003 -14.81120 -14.66904 -14.53659 -14.33086 -14.26658 -13.77360 -13.68303 -13.53586 -13.37916 -13.18592 -12.84530 -12.43575 -12.12614 -12.05999 -11.81868 -11.69311 -11.35465 -10.98349 -10.96121 -10.85088 -10.76437 -10.48195 -10.39120 -10.32351 -10.03320 -9.96520 -9.89310 -9.70229 -9.23280 -9.00726 -8.86472 -8.62899 -6.91279 -5.76311 -3.04522 -0.12453 0.30304 1.55344 2.14126 3.06185 3.13612 3.44170 3.49523 3.51019 3.77352 3.86672 4.19672 4.29532 4.41962 4.49643 4.55853 4.64670 4.71744 4.74535 4.82363 4.86272 5.03221 5.07787 5.37584 5.44762 5.50808 5.55003 5.56536 5.62476 5.64286 5.65810 5.76981 5.80833 5.88442 5.91381 5.93090 6.04834 6.10272 6.17492 6.20842 6.28248 6.37316 6.52053 6.54561 6.56807 6.77927 6.89799 7.45025 7.49659 7.71129 8.13122 8.42827 9.54213 10.11678 10.46859 11.46599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002372 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.152004 B =11801.211512 C =13176.366661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.146 3.854 17 H 0.095 0.905 18 N -0.712 5.712 19 C 0.558 3.442 20 O -0.538 6.538 21 C -0.130 4.130 22 C -0.073 4.073 23 C -0.097 4.097 24 C 0.142 3.858 25 N -0.477 5.477 26 C 0.139 3.861 27 C -0.182 4.182 28 C -0.045 4.045 29 C -0.114 4.114 30 C -0.027 4.027 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -24.476 10.919 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.113 0.887 18 N -0.362 5.362 19 C 0.345 3.655 20 O -0.416 6.416 21 C -0.133 4.133 22 C -0.094 4.094 23 C -0.115 4.115 24 C 0.021 3.979 25 N -0.185 5.185 26 C -0.034 4.034 27 C -0.202 4.202 28 C -0.071 4.071 29 C -0.116 4.116 30 C -0.046 4.046 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.236 0.764 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.178 0.822 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.904 -24.232 10.829 26.828 hybrid contribution 0.525 0.825 -0.126 0.986 sum 4.429 -23.407 10.704 26.117 Atomic orbital electron populations 1.69652 1.05069 1.25607 1.57983 1.24721 0.95529 0.97645 1.03124 0.86198 0.78670 0.83868 0.77526 1.21726 1.21784 1.20796 1.19228 0.91033 0.84189 1.42414 0.91275 1.42318 1.05798 0.99855 1.89479 1.20686 0.92919 0.85182 0.97905 1.22440 0.97918 0.93156 0.98634 0.90237 1.22453 1.00526 0.95216 0.96618 1.22388 0.97568 0.95958 1.00357 1.22544 0.97582 0.97889 0.98966 1.21762 1.01350 0.93053 0.79718 0.88695 1.46116 1.28652 1.48099 1.13383 1.18157 0.81780 0.78893 0.86714 1.90770 1.36057 1.57103 1.57695 1.20011 0.97731 1.01206 0.94352 1.21004 0.97149 0.97983 0.93242 1.20704 0.98389 0.96927 0.95483 1.19023 0.93783 0.95741 0.89353 1.68089 1.25960 1.11502 1.12989 1.23058 0.89046 0.91075 1.00181 1.21916 1.00618 1.02621 0.94995 1.21585 0.96541 0.93300 0.95719 1.18811 0.97350 1.00424 0.95048 1.21449 0.96800 0.92958 0.93437 0.93558 0.78276 0.96088 0.96477 0.90669 0.91003 0.91802 0.91833 0.91268 0.91725 0.76422 0.84647 0.83984 0.82201 0.84247 0.83976 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.24 5.49 -59.91 -0.33 -18.57 16 10 C 0.16 3.22 5.54 -4.04 -0.02 3.19 16 11 C -0.10 -1.57 2.59 -88.96 -0.23 -1.80 16 12 H 0.08 1.20 7.74 -51.93 -0.40 0.80 16 13 C -0.11 -1.60 6.19 -24.74 -0.15 -1.76 16 14 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 15 C -0.13 -1.58 6.59 -25.61 -0.17 -1.75 16 16 C 0.15 1.99 2.82 -66.81 -0.19 1.80 16 17 H 0.09 1.48 7.26 -51.93 -0.38 1.10 16 18 N -0.71 -8.72 4.93 -53.69 -0.26 -8.98 16 19 C 0.56 7.49 7.76 -12.36 -0.10 7.39 16 20 O -0.54 -8.87 15.96 5.31 0.08 -8.79 16 21 C -0.13 -1.47 5.87 -104.98 -0.62 -2.09 16 22 C -0.07 -0.71 9.44 -39.59 -0.37 -1.08 16 23 C -0.10 -0.96 9.95 -39.53 -0.39 -1.35 16 24 C 0.14 1.55 6.61 -84.78 -0.56 0.99 16 25 N -0.48 -5.00 10.33 -10.92 -0.11 -5.11 16 26 C 0.14 1.03 11.15 -17.46 -0.19 0.84 16 27 C -0.18 -1.12 10.03 -39.78 -0.40 -1.52 16 28 C -0.05 -0.34 9.89 -39.18 -0.39 -0.73 16 29 C -0.11 -1.14 5.74 -106.82 -0.61 -1.76 16 30 C -0.03 -0.28 9.35 -38.74 -0.36 -0.65 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 9.95 7.64 -40.82 -0.31 9.63 16 33 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.10 7.97 -51.93 -0.41 0.69 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 41 H 0.40 4.05 6.34 -40.82 -0.26 3.79 16 42 H 0.14 1.02 6.35 -52.49 -0.33 0.68 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 46 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.15 1.45 7.62 -52.49 -0.40 1.05 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -34.24 388.39 -10.92 -45.16 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.67 Total: 9.49 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -5.18 Total: -9.22 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.02 Total: -60.02 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.24 -10.92 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.198 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds