Wall clock time and date at job start Sat Apr 11 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.43777 * 305.70471 * 11 10 9 13 13 C 1.54889 * 110.48536 * 68.24374 * 11 10 9 14 14 C 1.55025 * 102.68586 * 156.51639 * 13 11 10 15 15 C 1.54265 * 104.28095 * 322.23656 * 14 13 11 16 16 C 1.53874 * 106.59720 * 23.51618 * 15 14 13 17 17 H 1.08999 * 110.03036 * 240.71659 * 16 15 14 18 18 N 1.46500 * 110.03353 * 119.29005 * 16 15 14 19 19 C 1.34768 * 120.00276 * 87.82724 * 18 16 15 20 20 O 1.21605 * 120.00419 * 0.02562 * 19 18 16 21 21 C 1.47448 * 120.00107 * 180.02562 * 19 18 16 22 22 C 1.38954 * 121.16855 * 0.02562 * 21 19 18 23 23 N 1.32195 * 121.31606 * 180.02562 * 22 21 19 24 24 C 1.31197 * 123.69596 * 359.97438 * 23 22 21 25 25 C 1.40378 * 120.91901 * 359.97438 * 24 23 22 26 26 C 1.40398 * 122.15003 * 180.02562 * 25 24 23 27 27 C 1.36237 * 119.48785 * 179.19461 * 26 25 24 28 28 C 1.39297 * 121.10079 * 0.77711 * 27 26 25 29 29 C 1.36439 * 120.94811 * 359.48278 * 28 27 26 30 30 C 1.39684 * 119.43883 * 359.97438 * 29 28 27 31 31 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 33 33 H 1.08994 * 109.47239 * 300.00354 * 10 9 7 34 34 H 1.08999 * 109.47211 * 60.00448 * 10 9 7 35 35 H 1.09003 * 110.75698 * 274.93930 * 13 11 10 36 36 H 1.09003 * 110.75570 * 38.30294 * 13 11 10 37 37 H 1.09004 * 110.52313 * 203.48836 * 14 13 11 38 38 H 1.09004 * 110.36826 * 80.90250 * 14 13 11 39 39 H 1.09001 * 110.02728 * 264.22929 * 15 14 13 40 40 H 1.09001 * 110.03334 * 142.80268 * 15 14 13 41 41 H 0.97005 * 119.99112 * 267.83573 * 18 16 15 42 42 H 1.08001 * 119.33899 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.53840 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.25091 * 359.95520 * 26 25 24 45 45 H 1.07996 * 119.44753 * 180.22999 * 27 26 25 46 46 H 1.07998 * 119.52430 * 179.44752 * 28 27 26 47 47 H 1.08006 * 120.27921 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0638 -4.8197 -0.0008 12 1 0.3643 -4.7218 0.8295 13 6 0.3012 -4.8819 -1.3475 14 6 -0.1483 -6.3640 -1.4160 15 6 1.0390 -7.1496 -0.8221 16 6 1.8097 -6.1677 0.0778 17 1 2.8307 -6.0511 -0.2855 18 7 1.8205 -6.6556 1.4591 19 6 2.7907 -7.4963 1.8692 20 8 3.6575 -7.8496 1.0929 21 6 2.8013 -7.9878 3.2594 22 6 1.8227 -7.6003 4.1666 23 7 1.8296 -8.0387 5.4137 24 6 2.7365 -8.8571 5.8925 25 6 3.7822 -9.3282 5.0831 26 6 4.7658 -10.2047 5.5684 27 6 5.7475 -10.6411 4.7306 28 6 5.8011 -10.2197 3.4039 29 6 4.8647 -9.3643 2.9010 30 6 3.8379 -8.9061 3.7298 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6840 -3.7141 -0.8921 34 1 2.6853 -3.7149 0.8878 35 1 -0.5607 -4.2147 -1.3346 36 1 0.9645 -4.6417 -2.1785 37 1 -0.3246 -6.6625 -2.4495 38 1 -1.0452 -6.5165 -0.8156 39 1 1.6860 -7.5096 -1.6220 40 1 0.6730 -7.9892 -0.2310 41 1 1.1292 -6.3736 2.0784 42 1 1.0409 -6.9275 3.8464 43 1 2.6776 -9.1726 6.9237 44 1 4.7374 -10.5400 6.5946 45 1 6.5016 -11.3182 5.1035 46 1 6.5958 -10.5748 2.7645 47 1 4.9170 -9.0442 1.8708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482699066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:01 Heat of formation + Delta-G solvation = 1.960854 kcal Electronic energy + Delta-G solvation = -28487.546879 eV Core-core repulsion = 24633.864136 eV Total energy + Delta-G solvation = -3853.682742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02261 -40.84051 -39.20173 -38.38765 -36.69440 -34.97114 -33.75944 -33.33236 -32.20567 -30.92512 -30.06444 -28.69413 -26.31529 -25.76500 -24.55416 -24.30804 -23.64130 -22.31895 -21.30508 -21.08034 -19.48377 -19.08162 -18.52794 -18.46134 -17.60557 -17.05563 -16.69198 -16.26983 -16.13957 -15.81478 -15.72578 -15.55326 -15.14406 -15.07935 -14.95668 -14.84047 -14.65826 -14.29119 -13.74600 -13.62938 -13.20923 -12.97012 -12.94694 -12.88420 -12.65937 -12.59856 -12.40575 -12.09052 -11.90638 -11.83985 -11.76899 -11.52674 -11.28592 -11.15276 -11.11234 -10.96317 -10.45308 -10.24425 -10.11767 -9.17807 -9.14805 -8.43590 -5.37183 -1.01895 -0.17012 0.62442 1.56035 1.66446 1.67979 1.81253 1.94236 2.14818 2.67510 3.01734 3.15688 3.32878 3.36363 3.45457 3.55569 3.59213 3.66533 3.78535 3.84201 3.92040 3.99299 4.23798 4.27275 4.28984 4.35343 4.41394 4.44556 4.48064 4.52170 4.59526 4.63952 4.73271 4.86562 4.89780 4.95655 5.00341 5.04772 5.14941 5.15218 5.21165 5.37458 5.38670 5.43429 5.49261 5.54155 5.55947 5.87431 6.34388 6.47674 6.77688 7.03801 7.06212 7.96219 8.07591 9.08855 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.002524 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.092130 B =11088.858179 C =11958.125906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.100 4.100 3 Si 1.129 2.871 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.339 4.339 8 H 0.059 0.941 9 N -0.750 5.750 10 C 0.169 3.831 11 C -0.092 4.092 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.155 3.845 17 H 0.073 0.927 18 N -0.705 5.705 19 C 0.566 3.434 20 O -0.566 6.566 21 C -0.203 4.203 22 C 0.128 3.872 23 N -0.522 5.522 24 C 0.191 3.809 25 C -0.139 4.139 26 C -0.074 4.074 27 C -0.124 4.124 28 C -0.088 4.088 29 C -0.149 4.149 30 C -0.009 4.009 31 H 0.246 0.754 32 H 0.364 0.636 33 H 0.013 0.987 34 H 0.006 0.994 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.409 0.591 42 H 0.171 0.829 43 H 0.209 0.791 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.146 0.854 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -27.119 11.002 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.291 4.291 3 Si 0.953 3.047 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.470 4.470 8 H 0.077 0.923 9 N -0.395 5.395 10 C 0.042 3.958 11 C -0.112 4.112 12 H 0.103 0.897 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.161 4.161 16 C 0.050 3.950 17 H 0.092 0.908 18 N -0.356 5.356 19 C 0.355 3.645 20 O -0.447 6.447 21 C -0.209 4.209 22 C -0.016 4.016 23 N -0.230 5.230 24 C 0.020 3.980 25 C -0.141 4.141 26 C -0.093 4.093 27 C -0.142 4.142 28 C -0.107 4.107 29 C -0.167 4.167 30 C -0.014 4.014 31 H 0.056 0.944 32 H 0.197 0.803 33 H 0.031 0.969 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.247 0.753 42 H 0.188 0.812 43 H 0.225 0.775 44 H 0.194 0.806 45 H 0.181 0.819 46 H 0.164 0.836 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.422 -25.346 10.849 28.308 hybrid contribution 0.215 -1.317 -0.675 1.496 sum 6.637 -26.663 10.174 29.300 Atomic orbital electron populations 1.70958 1.06972 1.28017 1.55977 1.27186 0.97176 1.04477 1.00311 0.82608 0.73494 0.71625 0.76927 1.21055 1.21519 1.20194 1.20375 0.92160 0.87315 1.47148 0.92275 1.42461 1.04839 1.01580 1.90608 1.20681 0.93563 0.84790 0.96773 1.22300 0.96864 0.92161 0.99835 0.89678 1.22432 0.99356 0.97547 0.95529 1.22343 0.97613 0.92908 1.01959 1.22473 0.97265 0.97613 0.98775 1.21537 1.00057 0.92341 0.81094 0.90849 1.46013 1.29109 1.47103 1.13384 1.18096 0.81066 0.78461 0.86880 1.90617 1.38399 1.59184 1.56455 1.21835 1.00189 1.04124 0.94704 1.23000 0.95410 0.95059 0.88118 1.67227 1.27505 1.13125 1.15119 1.24041 0.85837 0.87358 1.00775 1.19330 0.99766 1.01887 0.93149 1.21476 0.91991 0.94009 1.01852 1.21414 0.99547 1.00244 0.92944 1.21528 0.97653 0.94681 0.96823 1.21687 0.94671 0.98672 1.01688 1.19185 0.93911 0.94253 0.94070 0.94351 0.80320 0.96873 0.97589 0.91924 0.92210 0.90025 0.90306 0.91031 0.90689 0.75321 0.81238 0.77477 0.80564 0.81932 0.83599 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.08 13.70 21.65 0.30 -60.78 16 2 C -0.10 -5.91 5.50 84.86 0.47 -5.44 16 3 Si 1.13 53.09 29.92 68.60 2.05 55.14 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.34 -19.74 9.99 84.03 0.84 -18.90 16 8 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 9 N -0.75 -38.77 5.46 -343.46 -1.88 -40.65 16 10 C 0.17 7.12 5.54 86.38 0.48 7.59 16 11 C -0.09 -2.90 2.60 -9.72 -0.03 -2.92 16 12 H 0.08 2.57 7.74 -2.38 -0.02 2.56 16 13 C -0.11 -3.23 6.11 31.93 0.20 -3.03 16 14 C -0.11 -2.41 6.83 31.72 0.22 -2.20 16 15 C -0.12 -2.85 6.59 31.32 0.21 -2.65 16 16 C 0.15 4.32 2.82 45.71 0.13 4.45 16 17 H 0.07 2.41 7.26 -2.39 -0.02 2.39 16 18 N -0.71 -17.99 4.94 -442.36 -2.18 -20.17 16 19 C 0.57 16.38 7.77 86.67 0.67 17.05 16 20 O -0.57 -19.47 13.39 -4.05 -0.05 -19.52 16 21 C -0.20 -5.22 6.07 -18.59 -0.11 -5.33 16 22 C 0.13 2.84 10.71 84.81 0.91 3.75 16 23 N -0.52 -10.91 10.22 -193.73 -1.98 -12.89 16 24 C 0.19 2.94 11.00 85.31 0.94 3.88 16 25 C -0.14 -2.45 5.74 -21.33 -0.12 -2.57 16 26 C -0.07 -0.79 9.82 22.33 0.22 -0.58 16 27 C -0.12 -1.37 9.94 22.06 0.22 -1.15 16 28 C -0.09 -1.45 9.96 22.10 0.22 -1.23 16 29 C -0.15 -3.61 9.32 22.20 0.21 -3.40 16 30 C -0.01 -0.22 5.91 -19.94 -0.12 -0.34 16 31 H 0.25 15.29 6.77 -92.71 -0.63 14.66 16 32 H 0.36 19.02 6.41 -92.71 -0.59 18.43 16 33 H 0.01 0.59 8.06 -2.39 -0.02 0.57 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.88 8.00 -2.39 -0.02 1.87 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.64 7.92 -2.39 -0.02 1.62 16 41 H 0.41 8.59 6.46 -92.70 -0.60 7.99 16 42 H 0.17 3.04 6.44 -2.91 -0.02 3.02 16 43 H 0.21 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 45 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 46 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 47 H 0.14 4.03 5.24 -2.91 -0.02 4.01 16 Total: -1.00 -78.48 382.24 1.75 -76.72 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.04 Total: 35.17 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.54 Total: -13.02 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -5.74 Total: -134.49 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 53.09 SS G_CDS: 2.05 Total: 55.14 kcal Total: -78.48 1.75 -76.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482699066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.685 kcal (2) G-P(sol) polarization free energy of solvation -78.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds