Wall clock time and date at job start Sat Apr 11 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47667 * 65.00006 * 15 14 13 17 17 N 1.46506 * 109.47137 * 304.99664 * 15 14 13 18 18 C 1.34783 * 120.00061 * 154.99588 * 17 15 14 19 19 O 1.21286 * 119.99696 * 0.02562 * 18 17 15 20 20 C 1.50693 * 119.99840 * 180.02562 * 18 17 15 21 21 H 1.08993 * 110.49446 * 321.24980 * 20 18 17 22 22 C 1.54099 * 110.55045 * 84.11124 * 20 18 17 23 23 N 1.47054 * 103.86587 * 118.58999 * 22 20 18 24 24 C 1.33947 * 109.17946 * 0.02562 * 23 22 20 25 25 O 1.21588 * 123.04281 * 179.97438 * 24 23 22 26 26 N 1.33949 * 113.91745 * 359.97438 * 24 23 22 27 27 C 1.52999 * 109.47364 * 185.00220 * 15 14 13 28 28 C 1.52998 * 117.49862 * 248.62540 * 27 15 14 29 29 C 1.52999 * 117.50437 * 179.97438 * 27 15 14 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.00894 * 110.99640 * 303.95307 * 13 12 10 35 35 H 1.08997 * 109.46919 * 300.00265 * 14 13 12 36 36 H 1.08999 * 109.46846 * 60.00151 * 14 13 12 37 37 H 0.96993 * 120.00174 * 335.01107 * 17 15 14 38 38 H 1.09004 * 110.55123 * 237.18696 * 22 20 18 39 39 H 1.09004 * 110.54710 * 359.97438 * 22 20 18 40 40 H 0.97000 * 125.41277 * 180.02562 * 23 22 20 41 41 H 0.96992 * 125.41513 * 180.02562 * 26 24 23 42 42 H 1.09005 * 115.54633 * 34.32531 * 27 15 14 43 43 H 1.08997 * 117.49711 * 359.97438 * 28 27 15 44 44 H 1.08999 * 117.50126 * 145.01838 * 28 27 15 45 45 H 1.08999 * 117.50008 * 214.98357 * 29 27 15 46 46 H 1.09001 * 117.49374 * 359.97350 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 1.4983 -7.2708 -0.0323 15 6 2.5232 -8.4067 -0.0382 16 1 3.0890 -8.3904 0.8932 17 7 3.4385 -8.2327 -1.1689 18 6 4.6776 -8.7608 -1.1203 19 8 5.0346 -9.3805 -0.1407 20 6 5.6192 -8.5813 -2.2830 21 1 5.0797 -8.6609 -3.2267 22 6 6.3474 -7.2268 -2.1852 23 7 7.7670 -7.5965 -2.0821 24 6 7.8775 -8.9311 -2.1126 25 8 8.9447 -9.5097 -2.0444 26 7 6.7059 -9.5706 -2.2250 27 6 1.7980 -9.7473 -0.1710 28 6 1.8157 -10.6830 1.0394 29 6 2.6548 -11.0146 -0.1968 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 2.8339 -5.9082 -0.8061 35 1 0.8730 -7.3496 0.8570 36 1 0.8738 -7.3408 -0.9229 37 1 3.1529 -7.7372 -1.9523 38 1 6.1711 -6.6320 -3.0815 39 1 6.0276 -6.6838 -1.2958 40 1 8.5060 -6.9730 -2.0043 41 1 6.5922 -10.5331 -2.2621 42 1 0.8978 -9.7360 -0.7857 43 1 2.3443 -10.3436 1.9301 44 1 0.9271 -11.2874 1.2214 45 1 2.3180 -11.8371 -0.8279 46 1 3.7353 -10.8932 -0.1197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483583322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:51 Heat of formation + Delta-G solvation = -53.141000 kcal Electronic energy + Delta-G solvation = -29534.448201 eV Core-core repulsion = 25267.526800 eV Total energy + Delta-G solvation = -4266.921401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58512 -39.97583 -38.39825 -37.67402 -36.31975 -35.78156 -34.16546 -33.69732 -33.25144 -31.31186 -30.35758 -28.83665 -26.41895 -24.47256 -24.07326 -22.56699 -22.21268 -22.00199 -21.17645 -20.59471 -19.37639 -18.28567 -18.04939 -17.85344 -16.72361 -16.44304 -16.30801 -16.01066 -15.55226 -15.46973 -15.17279 -14.76345 -14.62555 -14.40628 -14.20407 -14.01131 -13.89847 -13.57464 -13.37387 -13.21700 -12.74251 -12.52416 -12.07632 -12.04306 -11.88419 -11.58449 -11.54918 -11.51636 -11.11101 -10.65005 -10.52554 -10.44799 -10.39824 -10.31000 -10.27993 -9.63218 -9.58987 -9.29194 -9.11990 -8.57173 -8.20063 -8.03742 -6.48801 -3.89795 2.13852 2.45246 2.71921 3.03442 3.11236 3.22699 3.29268 3.60660 3.76869 3.81754 3.90208 3.96236 4.17044 4.28694 4.46407 4.61004 4.70098 4.84633 4.91579 4.95766 5.01494 5.13386 5.16977 5.17208 5.27471 5.37205 5.50674 5.51883 5.62177 5.70335 5.79912 5.86749 5.98480 6.06751 6.16430 6.23750 6.72474 6.88498 7.01660 7.08932 7.18093 7.47594 7.48774 7.89208 7.98853 8.39301 8.53142 9.10733 9.46469 9.97112 10.68858 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.002665 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.006872 B =10505.978008 C =12834.647947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.054 3.946 15 C 0.179 3.821 16 H 0.100 0.900 17 N -0.713 5.713 18 C 0.508 3.492 19 O -0.517 6.517 20 C 0.104 3.896 21 H 0.115 0.885 22 C 0.101 3.899 23 N -0.736 5.736 24 C 0.707 3.293 25 O -0.587 6.587 26 N -0.715 5.715 27 C -0.170 4.170 28 C -0.168 4.168 29 C -0.183 4.183 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.346 0.654 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.399 0.601 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.434 0.566 41 H 0.432 0.568 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 -18.286 -6.775 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.299 5.299 14 C -0.076 4.076 15 C 0.075 3.925 16 H 0.118 0.882 17 N -0.365 5.365 18 C 0.292 3.708 19 O -0.392 6.392 20 C -0.007 4.007 21 H 0.132 0.868 22 C -0.024 4.024 23 N -0.399 5.399 24 C 0.405 3.595 25 O -0.465 6.465 26 N -0.377 5.377 27 C -0.190 4.190 28 C -0.206 4.206 29 C -0.220 4.220 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.166 0.834 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.276 0.724 41 H 0.275 0.725 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.852 -18.830 -5.340 19.661 hybrid contribution -0.940 1.053 -1.237 1.876 sum 0.912 -17.778 -6.577 18.977 Atomic orbital electron populations 1.69613 1.05963 1.28149 1.50484 1.25272 0.95631 0.99772 0.97227 0.85806 0.79729 0.81102 0.77757 1.19183 1.20746 1.20707 1.19746 0.93391 0.82177 1.47607 0.87838 1.41875 1.09222 1.04638 1.64148 1.19772 0.88384 0.84673 0.84700 1.90520 1.13701 1.87036 1.55559 1.21694 0.94283 0.90897 1.01387 1.59994 1.18832 0.99709 1.51373 1.22237 0.94978 0.88575 1.01783 1.20620 0.89700 0.91669 0.90529 0.88221 1.45971 1.13558 1.56031 1.20899 1.20650 0.82210 0.79308 0.88634 1.90698 1.75607 1.39923 1.32943 1.21860 0.90265 0.90106 0.98468 0.86761 1.22318 0.80948 0.94259 1.04917 1.45053 1.08716 1.06435 1.79725 1.15851 0.84107 0.82414 0.77100 1.91000 1.27772 1.69242 1.58440 1.44791 1.04655 1.08841 1.79452 1.22650 1.01628 0.91284 1.03454 1.22927 1.02312 1.02599 0.92737 1.23257 1.00291 0.97458 1.00951 0.91862 0.77461 0.89431 0.93772 0.83416 0.89219 0.94806 0.76643 0.88367 0.88610 0.72392 0.72537 0.87780 0.88512 0.88930 0.89591 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 13.05 55.50 0.72 -22.95 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.00 9.68 -14.93 -0.14 -8.15 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.44 5.29 -10.96 -0.06 -13.50 16 10 C 0.44 9.56 7.82 -10.98 -0.09 9.48 16 11 O -0.58 -14.69 15.78 5.55 0.09 -14.60 16 12 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 13 N -0.67 -8.96 6.12 -115.06 -0.70 -9.67 16 14 C 0.05 0.52 5.28 -3.83 -0.02 0.50 16 15 C 0.18 1.66 2.58 -67.93 -0.18 1.49 16 16 H 0.10 1.23 7.33 -51.93 -0.38 0.85 16 17 N -0.71 -5.52 4.34 -53.81 -0.23 -5.76 16 18 C 0.51 4.77 6.26 -10.99 -0.07 4.70 16 19 O -0.52 -6.90 13.63 5.55 0.08 -6.82 16 20 C 0.10 0.74 4.17 -68.20 -0.28 0.45 16 21 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 22 C 0.10 0.75 7.70 -3.17 -0.02 0.73 16 23 N -0.74 -7.09 6.37 -64.70 -0.41 -7.50 16 24 C 0.71 8.86 8.92 -88.40 -0.79 8.07 16 25 O -0.59 -9.88 18.05 5.29 0.10 -9.78 16 26 N -0.72 -6.80 5.63 -59.33 -0.33 -7.13 16 27 C -0.17 -1.39 5.36 -90.62 -0.49 -1.88 16 28 C -0.17 -1.45 10.18 -26.71 -0.27 -1.72 16 29 C -0.18 -1.64 9.73 -26.71 -0.26 -1.90 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.35 4.55 7.28 -39.29 -0.29 4.26 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.40 2.15 8.15 -40.82 -0.33 1.82 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.84 7.72 -51.93 -0.40 0.44 16 40 H 0.43 3.60 8.96 -40.82 -0.37 3.23 16 41 H 0.43 3.67 8.96 -40.82 -0.37 3.30 16 42 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 43 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.12 1.30 5.02 -51.93 -0.26 1.04 16 LS Contribution 386.56 15.07 5.83 5.83 Total: -1.00 -36.05 386.56 -9.14 -45.19 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -6.45 Total: 18.38 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -2.74 Total: 13.01 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: -1.02 Total: -66.50 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: 0.26 Total: -31.21 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.05 -9.14 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483583322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.954 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds