Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47667 * 65.00006 * 15 14 13 17 17 N 1.46506 * 109.47137 * 304.99664 * 15 14 13 18 18 C 1.34783 * 120.00061 * 154.99588 * 17 15 14 19 19 O 1.21286 * 119.99696 * 0.02562 * 18 17 15 20 20 C 1.50693 * 119.99840 * 180.02562 * 18 17 15 21 21 H 1.08993 * 110.49446 * 321.24980 * 20 18 17 22 22 C 1.54099 * 110.55045 * 84.11124 * 20 18 17 23 23 N 1.47054 * 103.86587 * 118.58999 * 22 20 18 24 24 C 1.33947 * 109.17946 * 0.02562 * 23 22 20 25 25 O 1.21588 * 123.04281 * 179.97438 * 24 23 22 26 26 N 1.33949 * 113.91745 * 359.97438 * 24 23 22 27 27 C 1.52999 * 109.47364 * 185.00220 * 15 14 13 28 28 C 1.52998 * 117.49862 * 248.62540 * 27 15 14 29 29 C 1.52999 * 117.50437 * 179.97438 * 27 15 14 30 30 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.00894 * 110.99640 * 303.95307 * 13 12 10 35 35 H 1.08997 * 109.46919 * 300.00265 * 14 13 12 36 36 H 1.08999 * 109.46846 * 60.00151 * 14 13 12 37 37 H 0.96993 * 120.00174 * 335.01107 * 17 15 14 38 38 H 1.09004 * 110.55123 * 237.18696 * 22 20 18 39 39 H 1.09004 * 110.54710 * 359.97438 * 22 20 18 40 40 H 0.97000 * 125.41277 * 180.02562 * 23 22 20 41 41 H 0.96992 * 125.41513 * 180.02562 * 26 24 23 42 42 H 1.09005 * 115.54633 * 34.32531 * 27 15 14 43 43 H 1.08997 * 117.49711 * 359.97438 * 28 27 15 44 44 H 1.08999 * 117.50126 * 145.01838 * 28 27 15 45 45 H 1.08999 * 117.50008 * 214.98357 * 29 27 15 46 46 H 1.09001 * 117.49374 * 359.97350 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 1.4983 -7.2708 -0.0323 15 6 2.5232 -8.4067 -0.0382 16 1 3.0890 -8.3904 0.8932 17 7 3.4385 -8.2327 -1.1689 18 6 4.6776 -8.7608 -1.1203 19 8 5.0346 -9.3805 -0.1407 20 6 5.6192 -8.5813 -2.2830 21 1 5.0797 -8.6609 -3.2267 22 6 6.3474 -7.2268 -2.1852 23 7 7.7670 -7.5965 -2.0821 24 6 7.8775 -8.9311 -2.1126 25 8 8.9447 -9.5097 -2.0444 26 7 6.7059 -9.5706 -2.2250 27 6 1.7980 -9.7473 -0.1710 28 6 1.8157 -10.6830 1.0394 29 6 2.6548 -11.0146 -0.1968 30 1 -0.4849 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0068 32 1 0.6169 -4.9255 0.8690 33 1 0.6176 -4.9158 -0.9109 34 1 2.8339 -5.9082 -0.8061 35 1 0.8730 -7.3496 0.8570 36 1 0.8738 -7.3408 -0.9229 37 1 3.1529 -7.7372 -1.9523 38 1 6.1711 -6.6320 -3.0815 39 1 6.0276 -6.6838 -1.2958 40 1 8.5060 -6.9730 -2.0043 41 1 6.5922 -10.5331 -2.2621 42 1 0.8978 -9.7360 -0.7857 43 1 2.3443 -10.3436 1.9301 44 1 0.9271 -11.2874 1.2214 45 1 2.3180 -11.8371 -0.8279 46 1 3.7353 -10.8932 -0.1197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483583322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = -86.086640 kcal Electronic energy + Delta-G solvation = -29535.876831 eV Core-core repulsion = 25267.526800 eV Total energy + Delta-G solvation = -4268.350031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.37975 -40.80042 -40.05092 -38.54388 -37.27989 -36.77366 -35.84942 -34.76498 -34.02207 -33.21631 -31.25377 -29.71178 -27.82441 -25.86236 -24.97787 -23.30328 -23.03996 -22.83896 -21.92448 -21.34071 -20.99980 -19.88373 -19.11514 -18.70994 -17.78524 -17.48983 -17.24251 -16.89349 -16.78193 -16.44526 -16.28019 -15.92249 -15.86498 -15.52631 -15.25310 -15.12491 -14.97893 -14.79738 -14.34076 -14.16561 -13.88717 -13.49438 -13.26038 -13.19356 -12.92972 -12.86208 -12.79851 -12.46799 -12.36749 -12.25245 -12.10019 -11.59429 -11.47688 -11.40690 -11.15721 -11.05522 -10.54972 -10.30520 -10.01319 -9.97258 -9.83199 -9.26319 -8.44093 -5.91785 1.38409 1.40442 1.44570 1.57562 1.68946 1.96052 2.10504 2.17205 2.30971 2.84022 2.99362 3.09473 3.24437 3.31349 3.52172 3.62884 3.84053 3.97982 4.01425 4.14450 4.21659 4.33201 4.35618 4.39530 4.49335 4.59651 4.62688 4.68401 4.72163 4.81285 4.85343 4.94349 5.08102 5.30822 5.36455 5.44676 5.51558 5.89290 5.90001 6.12194 6.18151 6.26079 6.47604 6.53528 6.63999 7.16830 7.21451 7.49912 7.61621 8.16484 8.73452 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.002665 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.006872 B =10505.978008 C =12834.647947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.621 6.621 12 C 0.065 3.935 13 N -0.685 5.685 14 C 0.061 3.939 15 C 0.184 3.816 16 H 0.063 0.937 17 N -0.700 5.700 18 C 0.506 3.494 19 O -0.562 6.562 20 C 0.109 3.891 21 H 0.164 0.836 22 C 0.100 3.900 23 N -0.732 5.732 24 C 0.696 3.304 25 O -0.639 6.639 26 N -0.709 5.709 27 C -0.156 4.156 28 C -0.174 4.174 29 C -0.187 4.187 30 H 0.276 0.724 31 H 0.396 0.604 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.347 0.653 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.438 0.562 41 H 0.436 0.564 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 -18.288 -8.389 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.067 4.067 13 N -0.319 5.319 14 C -0.068 4.068 15 C 0.079 3.921 16 H 0.082 0.918 17 N -0.352 5.352 18 C 0.291 3.709 19 O -0.440 6.440 20 C 0.000 4.000 21 H 0.181 0.819 22 C -0.025 4.025 23 N -0.394 5.394 24 C 0.394 3.606 25 O -0.521 6.521 26 N -0.371 5.371 27 C -0.176 4.176 28 C -0.211 4.211 29 C -0.224 4.224 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.167 0.833 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.252 0.748 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.281 0.719 41 H 0.278 0.722 42 H 0.146 0.854 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.381 -18.812 -6.981 20.069 hybrid contribution -0.277 1.006 -0.682 1.247 sum -0.658 -17.806 -7.662 19.396 Atomic orbital electron populations 1.69666 1.06758 1.29110 1.50677 1.25972 0.96472 1.02266 0.96515 0.84930 0.78155 0.77467 0.78183 1.19746 1.19614 1.20055 1.19672 0.92667 0.84045 1.49483 0.90288 1.41948 1.09351 1.04740 1.65194 1.20931 0.88298 0.86165 0.82005 1.90494 1.15790 1.87959 1.56499 1.21536 0.93930 0.87764 1.03472 1.59933 1.19272 1.00672 1.52005 1.22255 0.94880 0.86298 1.03378 1.20435 0.89507 0.92541 0.89624 0.91838 1.45829 1.12890 1.55475 1.20995 1.21060 0.82694 0.78524 0.88591 1.90698 1.76493 1.42009 1.34806 1.22138 0.89347 0.89077 0.99459 0.81909 1.22546 0.79374 0.94645 1.05961 1.45094 1.10046 1.05582 1.78699 1.16154 0.84124 0.83222 0.77063 1.90949 1.29855 1.70440 1.60903 1.44778 1.04495 1.09437 1.78343 1.22636 1.01790 0.89974 1.03150 1.22964 1.02717 1.03211 0.92227 1.23182 0.99090 0.98562 1.01607 0.91414 0.76984 0.88064 0.90641 0.83314 0.88919 0.91677 0.74784 0.84668 0.90138 0.71935 0.72159 0.85391 0.90263 0.87230 0.88179 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.78 13.05 21.67 0.28 -47.50 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 41.38 29.55 68.60 2.03 43.40 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.33 -17.75 9.68 84.04 0.81 -16.94 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -27.38 5.29 -306.97 -1.62 -29.00 16 10 C 0.44 18.76 7.82 87.66 0.69 19.45 16 11 O -0.62 -31.36 15.78 -3.07 -0.05 -31.41 16 12 C 0.07 1.84 6.17 85.56 0.53 2.37 16 13 N -0.69 -16.85 6.12 -517.94 -3.17 -20.02 16 14 C 0.06 0.97 5.28 86.30 0.46 1.43 16 15 C 0.18 3.09 2.58 44.99 0.12 3.21 16 16 H 0.06 1.58 7.33 -2.39 -0.02 1.56 16 17 N -0.70 -9.33 4.34 -442.53 -1.92 -11.24 16 18 C 0.51 8.94 6.26 87.65 0.55 9.49 16 19 O -0.56 -15.32 13.63 -3.05 -0.04 -15.36 16 20 C 0.11 1.33 4.17 44.51 0.19 1.52 16 21 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 22 C 0.10 1.30 7.70 86.65 0.67 1.97 16 23 N -0.73 -13.80 6.37 -477.33 -3.04 -16.85 16 24 C 0.70 17.64 8.92 179.57 1.60 19.24 16 25 O -0.64 -22.41 18.05 -3.99 -0.07 -22.48 16 26 N -0.71 -13.06 5.63 -460.34 -2.59 -15.65 16 27 C -0.16 -2.17 5.36 -10.80 -0.06 -2.23 16 28 C -0.17 -2.78 10.18 30.61 0.31 -2.47 16 29 C -0.19 -3.14 9.73 30.61 0.30 -2.84 16 30 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 31 H 0.40 17.89 7.90 -92.71 -0.73 17.16 16 32 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.35 8.33 7.28 -89.70 -0.65 7.68 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.41 3.00 8.15 -92.71 -0.76 2.24 16 38 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.35 7.72 -2.38 -0.02 1.33 16 40 H 0.44 7.27 8.96 -92.71 -0.83 6.44 16 41 H 0.44 7.30 8.96 -92.71 -0.83 6.47 16 42 H 0.13 1.25 8.11 -2.38 -0.02 1.23 16 43 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 44 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 2.08 5.02 -2.39 -0.01 2.07 16 Total: -1.00 -81.87 386.56 -6.29 -88.17 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -2.72 Total: 43.93 kcal Atomic # 6 Polarization: 27.40 SS G_CDS: 6.62 Total: 34.02 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -12.06 Total: -140.27 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -0.16 Total: -69.25 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -81.87 -6.29 -88.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483583322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.081 kcal (2) G-P(sol) polarization free energy of solvation -81.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds