Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99704 * 2 1 4 4 H 1.48498 * 109.46821 * 269.99807 * 3 2 1 5 5 H 1.48502 * 109.47451 * 29.99471 * 3 2 1 6 6 H 1.48501 * 109.47204 * 149.99843 * 3 2 1 7 7 C 1.38945 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00071 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00405 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99800 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.46794 * 294.99959 * 15 14 13 17 17 N 1.46497 * 109.47007 * 55.00144 * 15 14 13 18 18 C 1.34783 * 119.99798 * 204.99954 * 17 15 14 19 19 O 1.21288 * 119.99662 * 359.97438 * 18 17 15 20 20 C 1.50695 * 119.99999 * 180.02562 * 18 17 15 21 21 H 1.08993 * 110.49356 * 38.74992 * 20 18 17 22 22 C 1.54105 * 110.54894 * 275.89353 * 20 18 17 23 23 N 1.47053 * 103.86159 * 241.41005 * 22 20 18 24 24 C 1.33948 * 109.18087 * 359.97438 * 23 22 20 25 25 O 1.21590 * 123.04119 * 179.97438 * 24 23 22 26 26 N 1.33946 * 113.91558 * 0.02562 * 24 23 22 27 27 C 1.52997 * 109.46646 * 174.99983 * 15 14 13 28 28 C 1.53006 * 117.49773 * 248.61691 * 27 15 14 29 29 C 1.53001 * 60.00100 * 252.51453 * 28 27 15 30 30 H 0.96994 * 120.00398 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99821 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47213 * 60.00024 * 12 10 9 33 33 H 1.09001 * 109.47086 * 299.99779 * 12 10 9 34 34 H 1.00904 * 110.99696 * 56.04431 * 13 12 10 35 35 H 1.08993 * 109.47737 * 60.00169 * 14 13 12 36 36 H 1.09000 * 109.47263 * 299.99731 * 14 13 12 37 37 H 0.96999 * 120.00657 * 24.99737 * 17 15 14 38 38 H 1.09003 * 110.54743 * 359.97438 * 22 20 18 39 39 H 1.08994 * 110.55007 * 122.81498 * 22 20 18 40 40 H 0.97004 * 125.40971 * 180.02562 * 23 22 20 41 41 H 0.96999 * 125.41049 * 180.02562 * 26 24 23 42 42 H 1.08997 * 115.55612 * 34.33197 * 27 15 14 43 43 H 1.09001 * 117.50025 * 0.02562 * 28 27 15 44 44 H 1.09003 * 117.49899 * 145.02299 * 28 27 15 45 45 H 1.09003 * 117.49539 * 252.50639 * 29 28 27 46 46 H 1.09001 * 117.51582 * 107.48560 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6528 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0016 11 8 3.2104 -3.5578 0.0011 12 6 1.2440 -4.8629 0.0022 13 7 2.1987 -5.9795 0.0027 14 6 1.4984 -7.2708 0.0026 15 6 2.5234 -8.4068 0.0038 16 1 3.0899 -8.3858 -0.9271 17 7 3.4379 -8.2381 1.1359 18 6 4.6770 -8.7661 1.0856 19 8 5.0347 -9.3811 0.1034 20 6 5.6174 -8.5931 2.2503 21 1 5.0770 -8.6780 3.1930 22 6 6.3458 -7.2380 2.1609 23 7 7.7654 -7.6072 2.0571 24 6 7.8758 -8.9420 2.0802 25 8 8.9430 -9.5202 2.0089 26 7 6.7041 -9.5820 2.1878 27 6 1.7980 -9.7480 0.1295 28 6 1.9785 -10.5293 1.4326 29 6 2.6549 -11.0154 0.1492 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3907 0.0016 32 1 0.6170 -4.9209 -0.8876 33 1 0.6177 -4.9205 0.8925 34 1 2.8336 -5.9120 0.7840 35 1 0.8738 -7.3455 -0.8875 36 1 0.8732 -7.3451 0.8924 37 1 3.1517 -7.7466 1.9216 38 1 6.0275 -6.6904 1.2737 39 1 6.1686 -6.6483 3.0602 40 1 8.5046 -6.9833 1.9843 41 1 6.5904 -10.5447 2.2201 42 1 0.8265 -9.8049 -0.3614 43 1 2.6136 -10.0876 2.2005 44 1 1.1255 -11.1003 1.7993 45 1 2.2470 -11.9063 -0.3284 46 1 3.7354 -10.8937 0.0723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483583323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -48.707731 kcal Electronic energy + Delta-G solvation = -29678.281390 eV Core-core repulsion = 25411.552230 eV Total energy + Delta-G solvation = -4266.729160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63914 -40.13847 -38.39646 -37.66258 -36.32700 -35.69296 -34.09431 -33.65666 -33.26686 -31.31592 -30.42518 -28.90264 -26.46727 -24.47723 -24.12407 -22.69986 -22.19041 -22.02108 -21.29875 -20.25336 -19.37752 -18.29705 -18.04404 -17.86481 -16.67432 -16.62116 -16.35000 -16.23106 -15.63717 -15.46926 -14.94847 -14.78552 -14.61736 -14.44074 -14.17992 -13.95107 -13.88001 -13.59149 -13.37494 -13.18904 -12.78601 -12.52634 -12.25503 -12.04003 -11.94641 -11.67328 -11.58298 -11.49162 -11.09311 -10.71172 -10.53866 -10.44979 -10.38906 -10.28728 -10.15785 -9.64754 -9.57811 -9.32761 -9.13249 -8.56971 -8.19751 -8.03669 -6.48638 -3.89779 2.11329 2.43093 2.72084 3.03457 3.12948 3.22378 3.27281 3.58127 3.71366 3.81985 3.89889 3.94097 4.15836 4.25460 4.43512 4.62192 4.67603 4.75957 4.93951 4.99250 5.02086 5.14511 5.15786 5.20286 5.23239 5.35808 5.44683 5.49811 5.64357 5.71736 5.77650 5.86551 5.90627 6.09153 6.16453 6.20698 6.71206 6.87128 7.01829 7.07020 7.14977 7.47554 7.48594 7.85781 7.98686 8.38139 8.53201 9.10678 9.46490 9.97188 10.68939 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.002651 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.442966 B =10560.835120 C =12727.948372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.054 3.946 15 C 0.180 3.820 16 H 0.103 0.897 17 N -0.715 5.715 18 C 0.506 3.494 19 O -0.513 6.513 20 C 0.103 3.897 21 H 0.114 0.886 22 C 0.102 3.898 23 N -0.736 5.736 24 C 0.707 3.293 25 O -0.586 6.586 26 N -0.715 5.715 27 C -0.167 4.167 28 C -0.177 4.177 29 C -0.183 4.183 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.346 0.654 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.400 0.600 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.434 0.566 41 H 0.433 0.567 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -18.197 7.288 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.299 5.299 14 C -0.076 4.076 15 C 0.075 3.925 16 H 0.121 0.879 17 N -0.367 5.367 18 C 0.290 3.710 19 O -0.387 6.387 20 C -0.008 4.008 21 H 0.132 0.868 22 C -0.024 4.024 23 N -0.399 5.399 24 C 0.405 3.595 25 O -0.464 6.464 26 N -0.377 5.377 27 C -0.187 4.187 28 C -0.214 4.214 29 C -0.220 4.220 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.166 0.834 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.235 0.765 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.276 0.724 41 H 0.275 0.725 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.891 -18.740 5.849 19.722 hybrid contribution -0.926 1.041 1.189 1.831 sum 0.965 -17.699 7.038 19.071 Atomic orbital electron populations 1.69606 1.05958 1.28257 1.50405 1.25266 0.95629 0.99765 0.97204 0.85861 0.79215 0.80765 0.78479 1.20350 1.20919 1.19394 1.19694 0.93364 0.82195 1.47737 0.87898 1.41867 1.09218 1.04628 1.64139 1.19768 0.88385 0.84678 0.84710 1.90518 1.13705 1.87039 1.55575 1.21693 0.94281 0.90904 1.01374 1.59997 1.18861 0.99726 1.51308 1.22233 0.95014 0.88577 1.01793 1.20568 0.89715 0.91710 0.90500 0.87907 1.45996 1.13622 1.56352 1.20756 1.20684 0.82175 0.79372 0.88770 1.90710 1.75405 1.39869 1.32740 1.21861 0.90315 0.90210 0.98368 0.86820 1.22317 0.80957 0.94213 1.04938 1.45054 1.08694 1.06412 1.79762 1.15850 0.84103 0.82414 0.77102 1.91003 1.27759 1.69265 1.58373 1.44788 1.04630 1.08810 1.79506 1.22707 1.01020 0.92466 1.02467 1.22900 1.03232 1.03840 0.91428 1.23323 1.01186 0.96938 1.00545 0.91809 0.77459 0.89436 0.93786 0.83433 0.89319 0.94672 0.76520 0.88580 0.88350 0.72373 0.72521 0.87021 0.89094 0.89231 0.89389 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 13.05 55.50 0.72 -22.95 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.02 9.68 -14.93 -0.14 -8.16 16 8 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 9 N -0.56 -13.43 5.29 -10.96 -0.06 -13.49 16 10 C 0.44 9.55 7.82 -10.99 -0.09 9.46 16 11 O -0.58 -14.68 15.78 5.55 0.09 -14.59 16 12 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 13 N -0.67 -8.90 6.12 -115.05 -0.70 -9.60 16 14 C 0.05 0.51 5.28 -3.82 -0.02 0.49 16 15 C 0.18 1.64 2.74 -67.93 -0.19 1.45 16 16 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 17 N -0.71 -5.39 2.89 -53.81 -0.16 -5.54 16 18 C 0.51 4.66 5.77 -10.98 -0.06 4.59 16 19 O -0.51 -6.80 13.62 5.55 0.08 -6.73 16 20 C 0.10 0.72 4.17 -68.21 -0.28 0.44 16 21 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 22 C 0.10 0.74 7.70 -3.16 -0.02 0.72 16 23 N -0.74 -7.04 6.37 -64.70 -0.41 -7.45 16 24 C 0.71 8.82 8.92 -88.40 -0.79 8.03 16 25 O -0.59 -9.84 18.05 5.29 0.10 -9.74 16 26 N -0.72 -6.74 5.63 -59.33 -0.33 -7.07 16 27 C -0.17 -1.35 5.71 -90.61 -0.52 -1.87 16 28 C -0.18 -1.29 9.73 -26.73 -0.26 -1.55 16 29 C -0.18 -1.65 9.82 -26.73 -0.26 -1.91 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.39 8.96 7.90 -40.82 -0.32 8.64 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.35 4.52 7.28 -39.29 -0.29 4.23 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.40 2.11 8.15 -40.82 -0.33 1.78 16 38 H 0.10 0.84 7.72 -51.93 -0.40 0.44 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.43 3.57 8.96 -40.82 -0.37 3.21 16 41 H 0.43 3.65 8.96 -40.82 -0.37 3.28 16 42 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.09 0.60 6.67 -51.93 -0.35 0.26 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.12 1.30 5.02 -51.93 -0.26 1.04 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -36.01 383.64 -9.08 -45.09 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -6.39 Total: 18.04 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: -2.76 Total: 12.93 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -0.94 Total: -66.10 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: 0.26 Total: -31.06 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.01 -9.08 -45.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483583323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.618 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds