Wall clock time and date at job start Sat Apr 11 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48498 * 109.47168 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46934 * 120.00212 * 3 2 1 6 6 H 1.48497 * 109.47186 * 240.00282 * 3 2 1 7 7 C 1.38807 * 120.00165 * 180.28083 * 2 1 3 8 8 H 1.08000 * 119.99539 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00458 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47435 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47111 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88824 * 54.29918 * 12 11 10 14 14 C 1.55156 * 111.00591 * 178.18541 * 12 11 10 15 15 C 1.54327 * 102.94568 * 153.57790 * 14 12 11 16 16 N 1.47021 * 107.26703 * 337.80236 * 15 14 12 17 17 C 1.34778 * 125.64526 * 178.99325 * 16 15 14 18 18 O 1.21584 * 120.00159 * 174.83239 * 17 16 15 19 19 C 1.47566 * 120.00113 * 354.84362 * 17 16 15 20 20 C 1.38708 * 120.43562 * 313.00266 * 19 17 16 21 21 C 1.38993 * 120.75425 * 179.97438 * 20 19 17 22 22 C 1.36347 * 121.19018 * 359.97438 * 21 20 19 23 23 C 1.40346 * 119.92859 * 0.02562 * 22 21 20 24 24 C 1.40691 * 122.10033 * 180.02562 * 23 22 21 25 25 C 1.36273 * 118.66391 * 179.16852 * 24 23 22 26 26 N 1.32512 * 121.83461 * 0.78938 * 25 24 23 27 27 C 1.31316 * 122.72259 * 359.45837 * 26 25 24 28 28 C 1.40132 * 119.91830 * 0.02562 * 27 26 25 29 29 C 1.47463 * 108.72737 * 358.97820 * 16 15 14 30 30 H 0.96999 * 120.00073 * 359.72314 * 1 2 3 31 31 H 0.97003 * 119.99958 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46669 * 300.00373 * 10 9 7 33 33 H 1.09010 * 109.46490 * 59.99535 * 10 9 7 34 34 H 1.09000 * 109.47316 * 300.00334 * 11 10 9 35 35 H 1.09003 * 109.46741 * 60.00426 * 11 10 9 36 36 H 1.09000 * 110.71699 * 271.93659 * 14 12 11 37 37 H 1.08993 * 110.71935 * 35.20645 * 14 12 11 38 38 H 1.09000 * 109.88250 * 97.22565 * 15 14 12 39 39 H 1.08997 * 109.87741 * 218.23495 * 15 14 12 40 40 H 1.08003 * 119.62166 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.40736 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.03037 * 180.02562 * 22 21 20 43 43 H 1.07996 * 120.66669 * 359.95496 * 24 23 22 44 44 H 1.07994 * 119.07710 * 180.25374 * 25 24 23 45 45 H 1.08003 * 120.03630 * 180.02562 * 27 26 25 46 46 H 1.08992 * 110.35027 * 265.25390 * 29 16 15 47 47 H 1.08994 * 110.40708 * 142.91295 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2020 -0.0063 9 7 1.3258 -2.3880 -0.0112 10 6 2.0583 -3.6567 -0.0168 11 6 1.0642 -4.8196 -0.0214 12 6 1.8292 -6.1445 -0.0266 13 1 2.5382 -6.1872 0.8002 14 6 0.8536 -7.3503 0.0145 15 6 1.6645 -8.4745 -0.6639 16 7 2.6931 -7.8306 -1.4941 17 6 3.6191 -8.4713 -2.2346 18 8 4.3635 -7.8381 -2.9580 19 6 3.7296 -9.9413 -2.1677 20 6 3.7448 -10.5897 -0.9416 21 6 3.8480 -11.9740 -0.8708 22 6 3.9366 -12.7340 -1.9993 23 6 3.9249 -12.1187 -3.2606 24 6 4.0132 -12.8584 -4.4541 25 6 3.9781 -12.1903 -5.6413 26 7 3.8791 -10.8701 -5.6978 27 6 3.7980 -10.1178 -4.6245 28 6 3.8149 -10.7087 -3.3539 29 6 2.5438 -6.3678 -1.3829 30 1 -0.4850 0.8400 0.0041 31 1 0.3558 -2.3881 -0.0104 32 1 2.6850 -3.7103 -0.9070 33 1 2.6850 -3.7182 0.8730 34 1 0.4378 -4.7657 0.8691 35 1 0.4372 -4.7581 -0.9109 36 1 0.6124 -7.6161 1.0437 37 1 -0.0523 -7.1328 -0.5511 38 1 2.1372 -9.0996 0.0936 39 1 1.0076 -9.0808 -1.2875 40 1 3.6756 -10.0123 -0.0315 41 1 3.8574 -12.4563 0.0955 42 1 4.0157 -13.8084 -1.9225 43 1 4.0942 -13.9351 -4.4302 44 1 4.0412 -12.7519 -6.5617 45 1 3.7183 -9.0451 -4.7210 46 1 1.9330 -5.9858 -2.2008 47 1 3.5211 -5.8851 -1.3807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484545359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:04 Heat of formation + Delta-G solvation = 33.036766 kcal Electronic energy + Delta-G solvation = -28056.563829 eV Core-core repulsion = 24204.228639 eV Total energy + Delta-G solvation = -3852.335190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47901 -40.06255 -38.00999 -37.52654 -35.17844 -33.54078 -32.89547 -31.66359 -31.13650 -30.16410 -29.56810 -27.24350 -25.31424 -24.39222 -23.98986 -23.33076 -22.73649 -21.30461 -20.25337 -19.82353 -18.57705 -17.73497 -17.24785 -17.10723 -16.66490 -16.41706 -15.67405 -15.21087 -14.91290 -14.70236 -14.58045 -14.44770 -14.22402 -13.92132 -13.53870 -13.41506 -13.14376 -13.08565 -12.98996 -12.80195 -12.54938 -12.40791 -12.19196 -11.88858 -11.70874 -11.39605 -11.07443 -10.82142 -10.69942 -10.62641 -10.48632 -10.37798 -10.14648 -10.00635 -9.80528 -9.65997 -9.58820 -8.87730 -8.84453 -8.50483 -6.90222 -5.74473 -3.03087 -0.25670 0.44610 1.26149 2.31401 2.58152 2.79185 3.46495 3.50533 3.51789 3.65616 3.92832 4.08684 4.19959 4.27354 4.34201 4.39938 4.47822 4.55189 4.62289 4.64237 4.73320 4.83688 5.01523 5.11847 5.21538 5.24219 5.29549 5.34656 5.46466 5.51087 5.56520 5.58613 5.62932 5.71867 5.76522 5.78479 5.86502 5.87074 6.02233 6.06427 6.17717 6.22208 6.30572 6.35714 6.36638 6.83963 6.87916 7.22601 7.63280 7.72052 7.83228 8.44769 9.55645 10.13733 10.48084 11.48426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.001980 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.772858 B =14138.372657 C =14861.315620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.610 5.610 17 C 0.571 3.429 18 O -0.525 6.525 19 C -0.087 4.087 20 C -0.084 4.084 21 C -0.102 4.102 22 C -0.093 4.093 23 C -0.026 4.026 24 C -0.159 4.159 25 C 0.079 3.921 26 N -0.485 5.485 27 C 0.156 3.844 28 C -0.081 4.081 29 C 0.109 3.891 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.155 0.845 45 H 0.171 0.829 46 H 0.076 0.924 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -32.773 -1.886 33.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.166 4.166 15 C -0.027 4.027 16 N -0.343 5.343 17 C 0.359 3.641 18 O -0.402 6.402 19 C -0.092 4.092 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.032 4.032 24 C -0.179 4.179 25 C -0.064 4.064 26 N -0.193 5.193 27 C -0.014 4.014 28 C -0.083 4.083 29 C -0.012 4.012 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.172 0.828 45 H 0.188 0.812 46 H 0.094 0.906 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.908 -32.080 -3.235 32.614 hybrid contribution 0.179 0.429 0.939 1.047 sum 5.087 -31.651 -2.296 32.140 Atomic orbital electron populations 1.69651 1.05099 1.25742 1.57866 1.24749 0.95556 0.97727 1.03088 0.86254 0.78511 0.83478 0.77881 1.21688 1.21287 1.21223 1.19195 0.91029 0.84217 1.42594 0.91243 1.42353 1.05860 1.00077 1.89531 1.20684 0.93554 0.85590 0.97841 1.21686 0.98586 0.92390 1.02630 1.22359 0.97216 0.95010 0.96771 0.89566 1.22742 0.98445 0.94041 1.01419 1.22235 0.89928 0.96431 0.94112 1.48468 1.31261 1.08383 1.46202 1.17757 0.80131 0.86479 0.79745 1.90848 1.42886 1.67712 1.38727 1.19862 1.02956 0.92854 0.93524 1.21466 0.97103 0.94820 0.96899 1.20924 0.98626 0.93348 0.99198 1.21139 0.98573 1.00374 0.91068 1.18121 0.98301 0.92133 0.94603 1.21917 1.02561 1.01039 0.92358 1.22316 0.95921 0.90256 0.97938 1.67555 1.11795 1.06902 1.33022 1.23513 0.90874 1.00781 0.86273 1.18748 1.01995 0.93131 0.94475 1.22497 1.02080 0.78716 0.97902 0.93494 0.78324 0.96262 0.96475 0.91217 0.91511 0.89709 0.90056 0.91133 0.91283 0.84548 0.84682 0.84630 0.84197 0.82783 0.81171 0.90576 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.73 5.60 -59.91 -0.34 -19.06 16 10 C 0.15 2.96 6.14 -4.04 -0.02 2.94 16 11 C -0.11 -1.68 4.84 -26.74 -0.13 -1.81 16 12 C -0.09 -1.05 3.04 -88.47 -0.27 -1.32 16 13 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.13 -1.07 6.42 -24.90 -0.16 -1.23 16 15 C 0.10 0.77 6.03 -3.06 -0.02 0.75 16 16 N -0.61 -6.87 3.33 -171.70 -0.57 -7.44 16 17 C 0.57 7.33 6.86 -12.46 -0.09 7.25 16 18 O -0.52 -8.61 15.60 5.29 0.08 -8.53 16 19 C -0.09 -0.92 5.36 -104.66 -0.56 -1.48 16 20 C -0.08 -0.64 8.38 -39.13 -0.33 -0.96 16 21 C -0.10 -0.59 9.93 -39.98 -0.40 -0.98 16 22 C -0.09 -0.58 9.79 -39.47 -0.39 -0.97 16 23 C -0.03 -0.23 5.74 -106.84 -0.61 -0.84 16 24 C -0.16 -1.19 9.88 -39.36 -0.39 -1.58 16 25 C 0.08 0.71 11.07 -17.97 -0.20 0.51 16 26 N -0.48 -5.84 10.30 -13.21 -0.14 -5.98 16 27 C 0.16 1.93 10.45 -17.06 -0.18 1.76 16 28 C -0.08 -0.89 5.76 -106.59 -0.61 -1.50 16 29 C 0.11 1.38 5.69 -2.50 -0.01 1.36 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 32 H 0.02 0.39 7.60 -51.93 -0.39 0.00 16 33 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 38 H 0.07 0.43 5.77 -51.93 -0.30 0.13 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.14 0.82 6.37 -52.48 -0.33 0.48 16 41 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16 42 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.17 2.26 6.25 -52.48 -0.33 1.93 16 46 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 47 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -35.04 384.46 -10.77 -45.80 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.69 Total: 5.11 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.61 Total: -5.62 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.32 Total: -60.26 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.04 -10.77 -45.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484545359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.842 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds