Wall clock time and date at job start Sat Apr 11 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48498 * 109.47168 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46934 * 120.00212 * 3 2 1 6 6 H 1.48497 * 109.47186 * 240.00282 * 3 2 1 7 7 C 1.38807 * 120.00165 * 180.28083 * 2 1 3 8 8 H 1.08000 * 119.99539 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00338 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00458 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47435 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47111 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88824 * 54.29918 * 12 11 10 14 14 C 1.55156 * 111.00591 * 178.18541 * 12 11 10 15 15 C 1.54327 * 102.94568 * 153.57790 * 14 12 11 16 16 N 1.47021 * 107.26703 * 337.80236 * 15 14 12 17 17 C 1.34778 * 125.64526 * 178.99325 * 16 15 14 18 18 O 1.21584 * 120.00159 * 174.83239 * 17 16 15 19 19 C 1.47566 * 120.00113 * 354.84362 * 17 16 15 20 20 C 1.38708 * 120.43562 * 313.00266 * 19 17 16 21 21 C 1.38993 * 120.75425 * 179.97438 * 20 19 17 22 22 C 1.36347 * 121.19018 * 359.97438 * 21 20 19 23 23 C 1.40346 * 119.92859 * 0.02562 * 22 21 20 24 24 C 1.40691 * 122.10033 * 180.02562 * 23 22 21 25 25 C 1.36273 * 118.66391 * 179.16852 * 24 23 22 26 26 N 1.32512 * 121.83461 * 0.78938 * 25 24 23 27 27 C 1.31316 * 122.72259 * 359.45837 * 26 25 24 28 28 C 1.40132 * 119.91830 * 0.02562 * 27 26 25 29 29 C 1.47463 * 108.72737 * 358.97820 * 16 15 14 30 30 H 0.96999 * 120.00073 * 359.72314 * 1 2 3 31 31 H 0.97003 * 119.99958 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.46669 * 300.00373 * 10 9 7 33 33 H 1.09010 * 109.46490 * 59.99535 * 10 9 7 34 34 H 1.09000 * 109.47316 * 300.00334 * 11 10 9 35 35 H 1.09003 * 109.46741 * 60.00426 * 11 10 9 36 36 H 1.09000 * 110.71699 * 271.93659 * 14 12 11 37 37 H 1.08993 * 110.71935 * 35.20645 * 14 12 11 38 38 H 1.09000 * 109.88250 * 97.22565 * 15 14 12 39 39 H 1.08997 * 109.87741 * 218.23495 * 15 14 12 40 40 H 1.08003 * 119.62166 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.40736 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.03037 * 180.02562 * 22 21 20 43 43 H 1.07996 * 120.66669 * 359.95496 * 24 23 22 44 44 H 1.07994 * 119.07710 * 180.25374 * 25 24 23 45 45 H 1.08003 * 120.03630 * 180.02562 * 27 26 25 46 46 H 1.08992 * 110.35027 * 265.25390 * 29 16 15 47 47 H 1.08994 * 110.40708 * 142.91295 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1038 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2020 -0.0063 9 7 1.3258 -2.3880 -0.0112 10 6 2.0583 -3.6567 -0.0168 11 6 1.0642 -4.8196 -0.0214 12 6 1.8292 -6.1445 -0.0266 13 1 2.5382 -6.1872 0.8002 14 6 0.8536 -7.3503 0.0145 15 6 1.6645 -8.4745 -0.6639 16 7 2.6931 -7.8306 -1.4941 17 6 3.6191 -8.4713 -2.2346 18 8 4.3635 -7.8381 -2.9580 19 6 3.7296 -9.9413 -2.1677 20 6 3.7448 -10.5897 -0.9416 21 6 3.8480 -11.9740 -0.8708 22 6 3.9366 -12.7340 -1.9993 23 6 3.9249 -12.1187 -3.2606 24 6 4.0132 -12.8584 -4.4541 25 6 3.9781 -12.1903 -5.6413 26 7 3.8791 -10.8701 -5.6978 27 6 3.7980 -10.1178 -4.6245 28 6 3.8149 -10.7087 -3.3539 29 6 2.5438 -6.3678 -1.3829 30 1 -0.4850 0.8400 0.0041 31 1 0.3558 -2.3881 -0.0104 32 1 2.6850 -3.7103 -0.9070 33 1 2.6850 -3.7182 0.8730 34 1 0.4378 -4.7657 0.8691 35 1 0.4372 -4.7581 -0.9109 36 1 0.6124 -7.6161 1.0437 37 1 -0.0523 -7.1328 -0.5511 38 1 2.1372 -9.0996 0.0936 39 1 1.0076 -9.0808 -1.2875 40 1 3.6756 -10.0123 -0.0315 41 1 3.8574 -12.4563 0.0955 42 1 4.0157 -13.8084 -1.9225 43 1 4.0942 -13.9351 -4.4302 44 1 4.0412 -12.7519 -6.5617 45 1 3.7183 -9.0451 -4.7210 46 1 1.9330 -5.9858 -2.2008 47 1 3.5211 -5.8851 -1.3807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484545359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:02 Heat of formation + Delta-G solvation = 10.486942 kcal Electronic energy + Delta-G solvation = -28057.541663 eV Core-core repulsion = 24204.228639 eV Total energy + Delta-G solvation = -3853.313023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.18600 -40.91994 -38.97395 -38.21444 -36.86402 -34.67932 -33.98337 -32.70624 -32.27992 -30.85661 -30.74393 -28.54552 -26.40146 -25.44429 -24.73685 -24.55782 -23.60833 -22.68065 -21.28761 -20.65241 -19.24122 -19.14599 -18.44816 -17.94444 -17.48487 -17.36290 -16.66001 -16.48668 -16.01354 -15.66664 -15.42671 -15.32583 -15.20218 -15.15395 -15.05160 -14.55314 -14.31225 -14.05318 -13.89972 -13.76376 -13.29817 -13.14740 -13.03372 -12.94568 -12.93065 -12.79299 -12.51659 -12.32918 -12.22749 -11.99725 -11.71768 -11.56507 -11.43554 -11.28706 -11.07267 -10.92970 -10.53922 -10.20328 -9.79879 -9.11847 -9.01474 -7.97077 -5.25956 -0.89191 -0.16244 0.56575 1.45517 1.48927 1.50754 1.55037 1.79441 2.05769 2.54623 2.98813 3.20297 3.36058 3.41395 3.52489 3.59324 3.69302 3.70272 3.78364 3.81013 3.91345 4.13013 4.16626 4.27105 4.31967 4.37547 4.47940 4.50491 4.59264 4.60765 4.62539 4.75324 4.76597 4.82682 4.83360 4.90149 4.95608 4.99455 5.10813 5.15177 5.21601 5.27069 5.33827 5.37753 5.45959 5.48348 5.58689 5.75157 6.25970 6.34713 6.88190 6.94179 7.31837 8.08509 8.31696 9.26127 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.001980 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.772858 B =14138.372657 C =14861.315620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.748 5.748 10 C 0.148 3.852 11 C -0.100 4.100 12 C -0.083 4.083 13 H 0.096 0.904 14 C -0.118 4.118 15 C 0.094 3.906 16 N -0.608 5.608 17 C 0.566 3.434 18 O -0.579 6.579 19 C -0.122 4.122 20 C -0.064 4.064 21 C -0.100 4.100 22 C -0.076 4.076 23 C -0.046 4.046 24 C -0.135 4.135 25 C 0.051 3.949 26 N -0.512 5.512 27 C 0.120 3.880 28 C -0.093 4.093 29 C 0.107 3.893 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.011 0.989 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.176 0.824 43 H 0.184 0.816 44 H 0.180 0.820 45 H 0.141 0.859 46 H 0.059 0.941 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -36.916 0.585 37.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.090 0.910 9 N -0.391 5.391 10 C 0.021 3.979 11 C -0.138 4.138 12 C -0.102 4.102 13 H 0.114 0.886 14 C -0.156 4.156 15 C -0.028 4.028 16 N -0.340 5.340 17 C 0.356 3.644 18 O -0.460 6.460 19 C -0.127 4.127 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.094 4.094 23 C -0.051 4.051 24 C -0.154 4.154 25 C -0.092 4.092 26 N -0.220 5.220 27 C -0.050 4.050 28 C -0.095 4.095 29 C -0.015 4.015 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.029 0.971 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.201 0.799 44 H 0.196 0.804 45 H 0.158 0.842 46 H 0.077 0.923 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.091 -36.260 -0.737 36.623 hybrid contribution 0.159 1.574 0.174 1.592 sum 5.250 -34.686 -0.564 35.085 Atomic orbital electron populations 1.69802 1.06494 1.26226 1.59325 1.25591 0.96508 1.01148 1.03608 0.85206 0.77251 0.79107 0.78173 1.21806 1.20189 1.20693 1.19593 0.91428 0.85610 1.41530 0.91031 1.42589 1.05714 1.01321 1.89442 1.20874 0.94454 0.85255 0.97282 1.21526 0.97554 0.92124 1.02645 1.22213 0.97718 0.94448 0.95843 0.88571 1.22750 0.97421 0.92172 1.03255 1.22486 0.89350 0.96511 0.94407 1.48537 1.31541 1.07759 1.46196 1.18289 0.79475 0.87754 0.78834 1.90802 1.45101 1.69106 1.40982 1.19676 1.07067 0.91072 0.94879 1.21802 0.94266 0.96135 0.96024 1.21378 0.97326 0.92213 1.00990 1.21630 0.95774 1.02365 0.89635 1.18508 0.98933 0.91085 0.96620 1.22388 0.98972 1.02897 0.91097 1.22796 0.97131 0.89260 1.00031 1.67430 1.12237 1.08834 1.33521 1.23150 0.94246 0.99846 0.87776 1.18835 1.02301 0.94680 0.93723 1.22357 1.00649 0.80007 0.98496 0.93896 0.79310 0.97107 0.96139 0.90448 0.92170 0.86747 0.90133 0.88137 0.90340 0.82758 0.80586 0.80631 0.79900 0.80350 0.84197 0.92272 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.75 -39.05 5.60 -343.46 -1.92 -40.98 16 10 C 0.15 5.93 6.14 86.38 0.53 6.46 16 11 C -0.10 -2.93 4.84 30.59 0.15 -2.78 16 12 C -0.08 -1.79 3.04 -9.40 -0.03 -1.82 16 13 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.12 -1.67 6.42 31.78 0.20 -1.47 16 15 C 0.09 1.30 6.03 86.73 0.52 1.82 16 16 N -0.61 -14.02 3.33 -815.41 -2.71 -16.73 16 17 C 0.57 15.60 6.86 86.70 0.59 16.19 16 18 O -0.58 -21.37 15.60 -3.98 -0.06 -21.43 16 19 C -0.12 -2.56 5.36 -19.89 -0.11 -2.67 16 20 C -0.06 -0.77 8.38 22.56 0.19 -0.58 16 21 C -0.10 -0.63 9.93 22.01 0.22 -0.41 16 22 C -0.08 -0.56 9.79 22.34 0.22 -0.34 16 23 C -0.05 -0.70 5.74 -21.30 -0.12 -0.82 16 24 C -0.13 -1.63 9.88 22.41 0.22 -1.41 16 25 C 0.05 0.89 11.07 84.13 0.93 1.82 16 26 N -0.51 -13.34 10.30 -195.72 -2.02 -15.36 16 27 C 0.12 3.33 10.45 85.23 0.89 4.22 16 28 C -0.09 -2.09 5.76 -21.14 -0.12 -2.21 16 29 C 0.11 2.87 5.69 86.85 0.49 3.36 16 30 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.37 20.48 7.67 -92.71 -0.71 19.76 16 32 H 0.01 0.46 7.60 -2.39 -0.02 0.44 16 33 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 36 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.19 8.04 -2.39 -0.02 1.18 16 38 H 0.10 0.81 5.77 -2.39 -0.01 0.80 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.15 1.22 6.37 -2.91 -0.02 1.20 16 41 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 43 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 44 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.14 4.51 6.25 -2.91 -0.02 4.50 16 46 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 47 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 Total: -1.00 -82.81 384.46 1.97 -80.84 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.28 Total: 22.49 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.09 Total: 1.73 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -6.37 Total: -132.91 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -82.81 1.97 -80.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484545359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.328 kcal (2) G-P(sol) polarization free energy of solvation -82.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds