Wall clock time and date at job start Sat Apr 11 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00416 * 2 1 4 4 H 1.48496 * 109.47433 * 270.00270 * 3 2 1 5 5 H 1.48506 * 109.46956 * 30.00339 * 3 2 1 6 6 H 1.48506 * 109.47212 * 149.99822 * 3 2 1 7 7 C 1.38812 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00364 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00171 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47141 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.67275 * 56.78237 * 11 10 9 13 13 C 1.54887 * 110.75633 * 293.54689 * 11 10 9 14 14 C 1.54269 * 104.19548 * 203.55879 * 13 11 10 15 15 C 1.53876 * 106.59962 * 23.60964 * 14 13 11 16 16 H 1.08997 * 110.03073 * 240.66843 * 15 14 13 17 17 N 1.46499 * 110.03372 * 119.28071 * 15 14 13 18 18 C 1.34785 * 119.99442 * 87.09679 * 17 15 14 19 19 O 1.21559 * 120.00320 * 359.97438 * 18 17 15 20 20 C 1.47764 * 119.99724 * 180.02562 * 18 17 15 21 21 C 1.40637 * 119.80703 * 359.97204 * 20 18 17 22 22 C 1.35701 * 120.92287 * 180.02562 * 21 20 18 23 23 C 1.40750 * 120.11367 * 359.97438 * 22 21 20 24 24 N 1.33647 * 120.83482 * 179.97438 * 23 22 21 25 25 C 1.31119 * 121.39750 * 180.02562 * 24 23 22 26 26 C 1.39314 * 121.76809 * 359.97438 * 25 24 23 27 27 C 1.36577 * 119.90655 * 0.25705 * 26 25 24 28 28 C 1.40892 * 118.15526 * 359.51446 * 27 26 25 29 29 C 1.38542 * 119.80655 * 179.97438 * 20 18 17 30 30 C 1.54269 * 106.64086 * 359.97330 * 15 14 13 31 31 H 0.97009 * 119.99518 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99544 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.47194 * 59.99514 * 10 9 7 34 34 H 1.09002 * 109.46834 * 300.00203 * 10 9 7 35 35 H 1.08996 * 110.48703 * 84.88198 * 13 11 10 36 36 H 1.09003 * 110.59764 * 322.29022 * 13 11 10 37 37 H 1.09000 * 110.03467 * 264.32637 * 14 13 11 38 38 H 1.08995 * 110.07301 * 142.91249 * 14 13 11 39 39 H 0.96996 * 120.00690 * 267.09178 * 17 15 14 40 40 H 1.08002 * 119.53694 * 0.04850 * 21 20 18 41 41 H 1.07999 * 119.93806 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.11477 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.04403 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.92211 * 179.72916 * 27 26 25 45 45 H 1.08001 * 120.29626 * 359.97438 * 29 20 18 46 46 H 1.08997 * 110.48228 * 95.09001 * 30 15 14 47 47 H 1.08992 * 110.49006 * 217.73812 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 1 0.3892 -4.7489 -0.8546 13 6 0.2666 -4.8612 1.3262 14 6 -0.1971 -6.3279 1.4435 15 6 0.7804 -7.1665 0.6015 16 1 0.2420 -7.6779 -0.1964 17 7 1.4642 -8.1441 1.4518 18 6 0.9031 -9.3482 1.6795 19 8 -0.1704 -9.6229 1.1798 20 6 1.5925 -10.3341 2.5376 21 6 2.8341 -10.0118 3.1142 22 6 3.4871 -10.9001 3.9054 23 6 2.9247 -12.1648 4.1609 24 7 3.5555 -13.0508 4.9375 25 6 3.0420 -14.2321 5.1825 26 6 1.8163 -14.6240 4.6487 27 6 1.1201 -13.7693 3.8425 28 6 1.6728 -12.4990 3.5858 29 6 1.0119 -11.5704 2.7695 30 6 1.8041 -6.1810 0.0009 31 1 -0.4850 0.8402 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6846 -3.7146 0.8894 34 1 2.6845 -3.7146 -0.8905 35 1 -0.5926 -4.1923 1.2764 36 1 0.9076 -4.5954 2.1669 37 1 -1.2097 -6.4317 1.0536 38 1 -0.1633 -6.6488 2.4845 39 1 2.3206 -7.9248 1.8508 40 1 3.2738 -9.0437 2.9249 41 1 4.4401 -10.6361 4.3396 42 1 3.5833 -14.9194 5.8157 43 1 1.4194 -15.6042 4.8685 44 1 0.1705 -14.0578 3.4165 45 1 0.0582 -11.8162 2.3263 46 1 2.6956 -6.1291 0.6259 47 1 2.0661 -6.4752 -1.0154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486211237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:24 Heat of formation + Delta-G solvation = 19.711455 kcal Electronic energy + Delta-G solvation = -27432.865795 eV Core-core repulsion = 23579.952776 eV Total energy + Delta-G solvation = -3852.913019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36494 -40.11319 -38.20301 -37.01094 -34.91281 -34.01062 -33.45803 -31.45688 -30.79590 -30.51729 -28.78923 -27.80284 -25.28349 -24.33734 -24.23664 -22.60910 -22.22193 -21.52859 -20.39108 -19.52249 -18.69204 -18.18083 -17.38174 -17.03279 -16.34104 -16.25417 -15.56790 -15.07269 -14.93958 -14.74541 -14.57654 -14.42296 -14.31895 -13.90133 -13.69178 -13.55544 -13.25452 -13.18674 -12.78468 -12.53612 -12.18903 -12.04712 -11.93220 -11.67182 -11.62872 -11.09083 -11.05681 -10.84372 -10.74274 -10.48706 -10.29294 -10.20564 -10.14841 -10.00033 -9.95356 -9.65761 -9.35488 -9.14852 -8.85176 -8.74856 -6.89326 -5.74834 -3.03021 -0.23897 0.18779 1.44080 2.01777 2.91690 3.00441 3.44384 3.49356 3.51110 3.65763 3.75542 4.08674 4.18779 4.29844 4.39894 4.52711 4.58359 4.61606 4.64874 4.77894 4.78808 4.97100 5.04898 5.26422 5.40104 5.44871 5.46465 5.52603 5.55724 5.60594 5.67248 5.69276 5.76433 5.80584 5.86550 5.90868 5.99371 6.06733 6.14784 6.25620 6.27547 6.32668 6.45460 6.58324 6.62393 6.81360 6.94478 7.29901 7.39099 7.71204 7.98773 8.44382 9.55496 10.14596 10.49172 11.48092 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.001699 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.711879 B =16478.378960 C =17084.778467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.162 3.838 11 C -0.096 4.096 12 H 0.078 0.922 13 C -0.111 4.111 14 C -0.134 4.134 15 C 0.141 3.859 16 H 0.091 0.909 17 N -0.715 5.715 18 C 0.557 3.443 19 O -0.536 6.536 20 C -0.132 4.132 21 C -0.075 4.075 22 C -0.096 4.096 23 C 0.143 3.857 24 N -0.478 5.478 25 C 0.140 3.860 26 C -0.181 4.181 27 C -0.045 4.045 28 C -0.114 4.114 29 C -0.025 4.025 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.399 0.601 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.072 0.928 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -31.527 8.994 33.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.115 4.115 12 H 0.097 0.903 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.109 0.891 17 N -0.366 5.366 18 C 0.344 3.656 19 O -0.414 6.414 20 C -0.135 4.135 21 C -0.095 4.095 22 C -0.115 4.115 23 C 0.021 3.979 24 N -0.186 5.186 25 C -0.032 4.032 26 C -0.201 4.201 27 C -0.071 4.071 28 C -0.116 4.116 29 C -0.045 4.045 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.235 0.765 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.179 0.821 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.091 0.909 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.606 -31.227 8.944 32.808 hybrid contribution -0.232 0.782 -0.099 0.822 sum 4.374 -30.445 8.844 32.004 Atomic orbital electron populations 1.69661 1.05091 1.25583 1.57861 1.24734 0.95519 0.97658 1.03137 0.86197 0.78626 0.83910 0.77496 1.21757 1.21798 1.20819 1.19238 0.91014 0.84259 1.42531 0.91260 1.42339 1.05901 0.99906 1.89408 1.20621 0.93027 0.85335 0.97612 1.22272 0.97551 0.93432 0.98217 0.90339 1.22334 1.00354 0.94617 0.97618 1.22594 0.99016 0.95759 0.99850 1.21772 0.93630 0.88455 0.92472 0.89061 1.46172 1.24500 1.14776 1.51173 1.18176 0.85030 0.81806 0.80614 1.90784 1.21319 1.78452 1.50884 1.19999 0.96417 0.95620 1.01499 1.20982 0.93452 0.99708 0.95373 1.20701 1.00782 0.91294 0.98707 1.19026 0.90859 0.94296 0.93712 1.68090 1.33868 1.02814 1.13841 1.23074 0.92547 0.92550 0.95046 1.21931 0.96892 1.01570 0.99670 1.21596 0.99263 0.91661 0.94611 1.18820 0.96421 0.95806 1.00598 1.21463 0.98876 0.91002 0.93175 1.22645 0.97706 0.94611 1.01006 0.93556 0.78226 0.96408 0.96491 0.91004 0.91471 0.91298 0.91768 0.76482 0.84711 0.83982 0.82134 0.84176 0.83925 0.83627 0.90907 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.39 5.45 -59.91 -0.33 -18.72 16 10 C 0.16 3.16 5.71 -4.04 -0.02 3.14 16 11 C -0.10 -1.47 2.95 -88.59 -0.26 -1.74 16 12 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.68 5.97 -25.07 -0.15 -1.83 16 14 C -0.13 -1.74 6.59 -25.61 -0.17 -1.91 16 15 C 0.14 1.67 3.23 -66.81 -0.22 1.45 16 16 H 0.09 1.18 7.59 -51.93 -0.39 0.79 16 17 N -0.71 -7.28 4.94 -53.69 -0.27 -7.55 16 18 C 0.56 6.52 7.76 -12.36 -0.10 6.42 16 19 O -0.54 -8.08 15.97 5.31 0.08 -8.00 16 20 C -0.13 -1.28 5.87 -104.99 -0.62 -1.90 16 21 C -0.07 -0.58 9.44 -39.58 -0.37 -0.96 16 22 C -0.10 -0.80 9.95 -39.54 -0.39 -1.19 16 23 C 0.14 1.35 6.61 -84.78 -0.56 0.79 16 24 N -0.48 -4.42 10.33 -10.92 -0.11 -4.54 16 25 C 0.14 0.89 11.15 -17.46 -0.19 0.69 16 26 C -0.18 -0.92 10.03 -39.78 -0.40 -1.32 16 27 C -0.05 -0.29 9.89 -39.18 -0.39 -0.67 16 28 C -0.11 -0.99 5.74 -106.81 -0.61 -1.61 16 29 C -0.03 -0.23 9.35 -38.74 -0.36 -0.60 16 30 C -0.12 -1.43 5.99 -25.03 -0.15 -1.58 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.15 7.53 -40.82 -0.31 9.84 16 33 H 0.02 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.05 8.02 -51.93 -0.42 0.63 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.40 3.07 6.34 -40.82 -0.26 2.81 16 40 H 0.14 0.72 6.35 -52.49 -0.33 0.38 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.16 0.51 8.06 -52.49 -0.42 0.08 16 43 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.15 1.27 7.62 -52.49 -0.40 0.87 16 46 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -34.62 388.50 -10.96 -45.58 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.69 Total: 7.68 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -5.21 Total: -10.18 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.02 Total: -58.37 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.08 Total: -8.00 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.62 -10.96 -45.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486211237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.294 kcal (2) G-P(sol) polarization free energy of solvation -34.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds