Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 H 1.08998 * 110.48342 * 80.73709 * 15 14 13 17 17 N 1.46498 * 110.59848 * 203.32368 * 15 14 13 18 18 C 1.34777 * 120.00044 * 269.83809 * 17 15 14 19 19 O 1.21567 * 120.00285 * 0.02562 * 18 17 15 20 20 C 1.47767 * 120.00124 * 180.02562 * 18 17 15 21 21 C 1.40640 * 119.80604 * 0.02562 * 20 18 17 22 22 C 1.35700 * 120.92489 * 179.97438 * 21 20 18 23 23 C 1.40762 * 120.11164 * 0.02562 * 22 21 20 24 24 N 1.33643 * 120.83847 * 180.02562 * 23 22 21 25 25 C 1.31121 * 121.39614 * 179.97438 * 24 23 22 26 26 C 1.39314 * 121.77281 * 359.97438 * 25 24 23 27 27 C 1.36581 * 119.89689 * 0.02562 * 26 25 24 28 28 C 1.40889 * 118.16275 * 359.97438 * 27 26 25 29 29 C 1.38542 * 119.80926 * 179.72758 * 20 18 17 30 30 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 34 34 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 35 35 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 36 36 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 37 37 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 38 38 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 39 39 H 0.96997 * 120.00308 * 89.84738 * 17 15 14 40 40 H 1.08005 * 119.53538 * 359.97213 * 21 20 18 41 41 H 1.08004 * 119.94171 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.11695 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.05235 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.92002 * 180.02562 * 27 26 25 45 45 H 1.08005 * 120.29580 * 0.02603 * 29 20 18 46 46 H 1.08996 * 110.03408 * 238.57457 * 30 11 10 47 47 H 1.09006 * 110.02846 * 0.02562 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 1 2.2620 -6.8283 1.8950 17 7 1.3396 -8.3894 0.8172 18 6 1.5528 -9.3226 1.7659 19 8 1.8669 -8.9852 2.8908 20 6 1.4046 -10.7560 1.4389 21 6 1.0415 -11.1418 0.1361 22 6 0.8996 -12.4516 -0.1893 23 6 1.1153 -13.4478 0.7815 24 7 0.9801 -14.7420 0.4768 25 6 1.1789 -15.6789 1.3723 26 6 1.5407 -15.3760 2.6831 27 6 1.6962 -14.0732 3.0626 28 6 1.4817 -13.0694 2.0976 29 6 1.6301 -11.7122 2.4157 30 6 1.8158 -6.1562 -0.1283 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8912 34 1 2.6841 -3.7150 0.8887 35 1 0.8880 -4.3869 2.1254 36 1 -0.6711 -4.3893 1.2427 37 1 -0.6918 -6.7941 1.0645 38 1 0.0073 -6.5568 2.6985 39 1 1.0887 -8.6586 -0.0802 40 1 0.8732 -10.3851 -0.6159 41 1 0.6198 -12.7301 -1.1946 42 1 1.0598 -16.7134 1.0858 43 1 1.6979 -16.1700 3.3980 44 1 1.9766 -13.8196 4.0743 45 1 1.9132 -11.4144 3.4146 46 1 1.4763 -6.6937 -1.0137 47 1 2.8892 -5.9763 -0.1886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486211238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = 19.453776 kcal Electronic energy + Delta-G solvation = -27411.742492 eV Core-core repulsion = 23558.818300 eV Total energy + Delta-G solvation = -3852.924192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39825 -40.13340 -38.31971 -37.06055 -35.09242 -34.06587 -33.66144 -31.48906 -30.77966 -30.54801 -28.77229 -27.71368 -25.23570 -24.36235 -24.01409 -22.64022 -22.39807 -21.53450 -20.63683 -19.60963 -18.80072 -18.21547 -17.43646 -17.18659 -16.40249 -16.34077 -15.35086 -15.24552 -15.00179 -14.83778 -14.63181 -14.48047 -14.02874 -13.93556 -13.77376 -13.62418 -13.53051 -13.27238 -13.16077 -12.58106 -12.25062 -12.18853 -11.97724 -11.80318 -11.42739 -11.12302 -11.00739 -10.74918 -10.72423 -10.49671 -10.37371 -10.21048 -10.15061 -10.03423 -9.98295 -9.38789 -9.18963 -9.12145 -8.84203 -8.78407 -6.96124 -6.07747 -3.06587 -0.27308 0.15201 1.40729 1.97983 2.86282 2.96620 3.53450 3.58530 3.62165 3.71851 3.72379 4.05383 4.15422 4.25509 4.36770 4.48908 4.57425 4.58597 4.64895 4.72750 4.76951 4.93869 4.97726 5.22848 5.36397 5.40084 5.43802 5.48718 5.50458 5.52614 5.55346 5.65520 5.72251 5.77655 5.78392 5.84053 5.95981 6.03126 6.06185 6.12353 6.21028 6.22369 6.39214 6.46375 6.56062 6.73975 6.86589 7.25056 7.35682 7.84460 7.94718 8.79161 9.27181 10.13524 10.28907 11.41161 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.041562 B = 0.001610 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.525472 B =17383.019725 C =17614.965025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.083 2.917 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.743 5.743 10 C 0.165 3.835 11 C -0.097 4.097 12 H 0.073 0.927 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.098 0.902 17 N -0.715 5.715 18 C 0.557 3.443 19 O -0.534 6.534 20 C -0.133 4.133 21 C -0.075 4.075 22 C -0.097 4.097 23 C 0.143 3.857 24 N -0.479 5.479 25 C 0.141 3.859 26 C -0.181 4.181 27 C -0.045 4.045 28 C -0.114 4.114 29 C -0.024 4.024 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.367 0.633 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.162 0.838 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.067 0.933 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -34.178 2.663 34.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.389 5.389 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.091 0.909 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.116 0.884 17 N -0.366 5.366 18 C 0.344 3.656 19 O -0.412 6.412 20 C -0.136 4.136 21 C -0.095 4.095 22 C -0.115 4.115 23 C 0.021 3.979 24 N -0.187 5.187 25 C -0.032 4.032 26 C -0.200 4.200 27 C -0.071 4.071 28 C -0.116 4.116 29 C -0.044 4.044 30 C -0.159 4.159 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.179 0.821 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.798 -32.355 2.544 32.505 hybrid contribution 0.025 -1.678 0.386 1.722 sum 1.823 -34.033 2.931 34.207 Atomic orbital electron populations 1.70851 1.06026 1.28374 1.53886 1.25768 0.97078 1.00971 1.00580 0.83194 0.73854 0.75331 0.76237 1.22334 1.22198 1.21402 1.20079 0.92051 0.85924 1.48130 0.91808 1.42356 1.04868 1.00950 1.90694 1.20730 0.92931 0.84860 0.97776 1.21905 0.97731 0.93933 0.98071 0.90859 1.22321 1.00854 0.94370 0.97377 1.22887 0.96590 0.96389 1.01291 1.21996 0.98619 0.77879 0.98021 0.88439 1.46046 1.70273 1.06681 1.13605 1.18179 0.77141 0.85272 0.84997 1.90798 1.47279 1.82202 1.20929 1.19988 1.05214 0.93554 0.94815 1.20963 0.96874 0.96486 0.95222 1.20696 1.00356 0.91005 0.99449 1.19023 0.96133 0.91165 0.91569 1.68089 1.14644 1.00081 1.35844 1.23079 0.91754 0.99139 0.89197 1.21937 1.02389 0.97504 0.98204 1.21605 0.93924 0.92354 0.99217 1.18819 1.03387 0.94444 0.94987 1.21474 0.93032 0.90221 0.99698 1.22400 1.01537 0.95745 0.96253 0.93423 0.80021 0.96463 0.96154 0.90821 0.91384 0.91498 0.91338 0.76579 0.84800 0.84006 0.82110 0.84139 0.83889 0.83584 0.91479 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.57 13.70 55.49 0.76 -28.81 16 2 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 3 Si 1.08 26.35 29.92 -169.99 -5.09 21.27 16 4 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.33 -9.53 9.99 -15.06 -0.15 -9.68 16 8 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.74 -18.93 5.45 -59.91 -0.33 -19.25 16 10 C 0.16 3.33 5.31 -4.05 -0.02 3.31 16 11 C -0.10 -1.51 2.96 -89.50 -0.26 -1.77 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.11 -1.70 6.08 -25.07 -0.15 -1.85 16 14 C -0.13 -1.70 6.58 -24.74 -0.16 -1.86 16 15 C 0.14 1.67 3.21 -66.28 -0.21 1.46 16 16 H 0.10 1.36 7.55 -51.93 -0.39 0.97 16 17 N -0.72 -7.14 5.11 -53.17 -0.27 -7.41 16 18 C 0.56 6.50 7.77 -12.36 -0.10 6.40 16 19 O -0.53 -8.16 15.95 5.31 0.08 -8.07 16 20 C -0.13 -1.26 5.87 -104.98 -0.62 -1.87 16 21 C -0.08 -0.56 9.44 -39.58 -0.37 -0.93 16 22 C -0.10 -0.76 9.95 -39.54 -0.39 -1.16 16 23 C 0.14 1.32 6.61 -84.78 -0.56 0.76 16 24 N -0.48 -4.30 10.33 -10.92 -0.11 -4.42 16 25 C 0.14 0.86 11.15 -17.45 -0.19 0.66 16 26 C -0.18 -0.89 10.03 -39.78 -0.40 -1.29 16 27 C -0.05 -0.28 9.89 -39.18 -0.39 -0.67 16 28 C -0.11 -0.97 5.74 -106.82 -0.61 -1.59 16 29 C -0.02 -0.22 9.34 -38.74 -0.36 -0.58 16 30 C -0.12 -1.45 6.19 -25.62 -0.16 -1.61 16 31 H 0.25 7.82 6.77 -40.82 -0.28 7.54 16 32 H 0.37 9.48 6.38 -40.82 -0.26 9.22 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.07 1.25 7.76 -51.93 -0.40 0.85 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 2.84 6.35 -40.82 -0.26 2.58 16 40 H 0.13 0.64 6.35 -52.48 -0.33 0.31 16 41 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 44 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 45 H 0.15 1.27 7.62 -52.48 -0.40 0.87 16 46 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 47 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -36.12 386.36 -10.90 -47.02 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.55 Total: 7.59 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -5.22 Total: -13.74 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.05 Total: -59.89 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.09 Total: 21.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.12 -10.90 -47.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486211238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.474 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds