Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 H 1.08998 * 110.48342 * 80.73709 * 15 14 13 17 17 N 1.46498 * 110.59848 * 203.32368 * 15 14 13 18 18 C 1.34777 * 120.00044 * 269.83809 * 17 15 14 19 19 O 1.21567 * 120.00285 * 0.02562 * 18 17 15 20 20 C 1.47767 * 120.00124 * 180.02562 * 18 17 15 21 21 C 1.40640 * 119.80604 * 0.02562 * 20 18 17 22 22 C 1.35700 * 120.92489 * 179.97438 * 21 20 18 23 23 C 1.40762 * 120.11164 * 0.02562 * 22 21 20 24 24 N 1.33643 * 120.83847 * 180.02562 * 23 22 21 25 25 C 1.31121 * 121.39614 * 179.97438 * 24 23 22 26 26 C 1.39314 * 121.77281 * 359.97438 * 25 24 23 27 27 C 1.36581 * 119.89689 * 0.02562 * 26 25 24 28 28 C 1.40889 * 118.16275 * 359.97438 * 27 26 25 29 29 C 1.38542 * 119.80926 * 179.72758 * 20 18 17 30 30 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 34 34 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 35 35 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 36 36 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 37 37 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 38 38 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 39 39 H 0.96997 * 120.00308 * 89.84738 * 17 15 14 40 40 H 1.08005 * 119.53538 * 359.97213 * 21 20 18 41 41 H 1.08004 * 119.94171 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.11695 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.05235 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.92002 * 180.02562 * 27 26 25 45 45 H 1.08005 * 120.29580 * 0.02603 * 29 20 18 46 46 H 1.08996 * 110.03408 * 238.57457 * 30 11 10 47 47 H 1.09006 * 110.02846 * 0.02562 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 1 2.2620 -6.8283 1.8950 17 7 1.3396 -8.3894 0.8172 18 6 1.5528 -9.3226 1.7659 19 8 1.8669 -8.9852 2.8908 20 6 1.4046 -10.7560 1.4389 21 6 1.0415 -11.1418 0.1361 22 6 0.8996 -12.4516 -0.1893 23 6 1.1153 -13.4478 0.7815 24 7 0.9801 -14.7420 0.4768 25 6 1.1789 -15.6789 1.3723 26 6 1.5407 -15.3760 2.6831 27 6 1.6962 -14.0732 3.0626 28 6 1.4817 -13.0694 2.0976 29 6 1.6301 -11.7122 2.4157 30 6 1.8158 -6.1562 -0.1283 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8912 34 1 2.6841 -3.7150 0.8887 35 1 0.8880 -4.3869 2.1254 36 1 -0.6711 -4.3893 1.2427 37 1 -0.6918 -6.7941 1.0645 38 1 0.0073 -6.5568 2.6985 39 1 1.0887 -8.6586 -0.0802 40 1 0.8732 -10.3851 -0.6159 41 1 0.6198 -12.7301 -1.1946 42 1 1.0598 -16.7134 1.0858 43 1 1.6979 -16.1700 3.3980 44 1 1.9766 -13.8196 4.0743 45 1 1.9132 -11.4144 3.4146 46 1 1.4763 -6.6937 -1.0137 47 1 2.8892 -5.9763 -0.1886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486211238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = -3.783598 kcal Electronic energy + Delta-G solvation = -27412.750140 eV Core-core repulsion = 23558.818300 eV Total energy + Delta-G solvation = -3853.931841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98845 -41.01066 -39.44372 -37.73365 -36.76607 -35.09539 -34.50287 -32.98380 -31.72856 -31.12734 -30.10346 -28.95312 -26.28965 -25.49936 -24.88855 -24.21498 -23.23092 -22.34938 -21.65705 -20.89886 -19.56775 -19.25679 -18.81851 -18.05675 -17.32794 -17.04536 -16.84147 -16.22833 -15.91115 -15.68985 -15.59630 -15.33771 -15.30033 -15.08133 -14.98969 -14.87348 -14.46682 -14.36328 -14.02824 -13.66373 -13.17103 -13.08675 -12.83856 -12.72448 -12.63548 -12.53979 -12.44929 -12.10976 -11.87033 -11.83974 -11.78331 -11.63454 -11.50954 -11.24127 -11.11230 -10.92048 -10.54811 -10.21059 -9.85056 -9.37150 -9.10297 -8.41041 -5.33979 -0.84856 -0.37448 0.83453 1.35882 1.57739 1.68555 1.82990 2.00164 2.24008 2.70821 3.04937 3.24163 3.38636 3.47146 3.51176 3.52135 3.62058 3.71539 3.80118 3.93203 3.96692 3.98206 4.02249 4.23412 4.35022 4.40587 4.43189 4.49136 4.53243 4.56907 4.66161 4.74153 4.83160 4.85288 4.92432 4.96024 4.99215 5.01205 5.05656 5.14789 5.16114 5.24041 5.30374 5.42887 5.45072 5.50300 5.58394 5.72263 6.44584 6.49509 6.85250 7.10003 7.10537 8.01083 8.11643 9.11382 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.041562 B = 0.001610 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.525472 B =17383.019725 C =17614.965025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.104 4.104 3 Si 1.130 2.870 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.291 1.291 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.755 5.755 10 C 0.162 3.838 11 C -0.088 4.088 12 H 0.076 0.924 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.146 3.854 16 H 0.076 0.924 17 N -0.700 5.700 18 C 0.558 3.442 19 O -0.578 6.578 20 C -0.147 4.147 21 C -0.070 4.070 22 C -0.104 4.104 23 C 0.123 3.877 24 N -0.509 5.509 25 C 0.139 3.861 26 C -0.172 4.172 27 C -0.055 4.055 28 C -0.131 4.131 29 C -0.029 4.029 30 C -0.109 4.109 31 H 0.244 0.756 32 H 0.362 0.638 33 H 0.020 0.980 34 H 0.013 0.987 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.416 0.584 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.192 0.808 43 H 0.176 0.824 44 H 0.163 0.837 45 H 0.142 0.858 46 H 0.100 0.900 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -36.533 1.896 36.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.295 4.295 3 Si 0.955 3.045 4 H -0.212 1.212 5 H -0.199 1.199 6 H -0.217 1.217 7 C -0.469 4.469 8 H 0.082 0.918 9 N -0.400 5.400 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.094 0.906 13 C -0.148 4.148 14 C -0.160 4.160 15 C 0.041 3.959 16 H 0.094 0.906 17 N -0.352 5.352 18 C 0.346 3.654 19 O -0.459 6.459 20 C -0.150 4.150 21 C -0.090 4.090 22 C -0.122 4.122 23 C 0.002 3.998 24 N -0.218 5.218 25 C -0.032 4.032 26 C -0.192 4.192 27 C -0.080 4.080 28 C -0.133 4.133 29 C -0.049 4.049 30 C -0.147 4.147 31 H 0.055 0.945 32 H 0.194 0.806 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.255 0.745 40 H 0.179 0.821 41 H 0.173 0.827 42 H 0.209 0.791 43 H 0.193 0.807 44 H 0.181 0.819 45 H 0.160 0.840 46 H 0.119 0.881 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.314 -34.767 1.745 34.888 hybrid contribution -0.105 -1.128 0.680 1.321 sum 2.209 -35.895 2.425 36.045 Atomic orbital electron populations 1.70962 1.07102 1.27903 1.56282 1.27225 0.97161 1.04644 1.00504 0.82589 0.73554 0.71513 0.76835 1.21242 1.19858 1.21721 1.20444 0.92358 0.87356 1.46753 0.91812 1.42563 1.04857 1.01961 1.90613 1.20915 0.93780 0.84592 0.97176 1.21794 0.96920 0.93896 0.98085 0.90602 1.22233 0.99886 0.96068 0.96647 1.22785 0.97722 0.94407 1.01110 1.21723 0.97493 0.79086 0.97569 0.90556 1.45839 1.69626 1.05486 1.14272 1.18511 0.76154 0.86256 0.84437 1.90775 1.49421 1.82952 1.22764 1.19892 1.07001 0.92086 0.96052 1.21136 0.96043 0.97044 0.94746 1.20918 1.00341 0.91013 0.99958 1.19335 0.96501 0.91820 0.92149 1.68132 1.16234 1.00327 1.37114 1.23732 0.90023 1.00070 0.89422 1.22326 1.00587 0.97876 0.98366 1.21955 0.93723 0.92542 0.99815 1.18981 1.04105 0.94583 0.95604 1.21551 0.92984 0.90793 0.99604 1.22301 1.01165 0.93801 0.97443 0.94525 0.80623 0.96251 0.96912 0.93315 0.92267 0.89593 0.92274 0.74532 0.82112 0.82686 0.79114 0.80678 0.81902 0.83993 0.88114 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.86 13.70 21.65 0.30 -61.56 16 2 C -0.10 -6.17 5.50 84.86 0.47 -5.71 16 3 Si 1.13 52.94 29.92 68.60 2.05 54.99 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 7 C -0.34 -19.59 9.99 84.03 0.84 -18.75 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.60 16 9 N -0.76 -39.04 5.45 -343.47 -1.87 -40.91 16 10 C 0.16 6.55 5.31 86.38 0.46 7.01 16 11 C -0.09 -2.65 2.96 -10.07 -0.03 -2.68 16 12 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.11 -3.40 6.08 31.67 0.19 -3.21 16 14 C -0.12 -3.02 6.58 31.89 0.21 -2.81 16 15 C 0.15 3.37 3.21 46.06 0.15 3.52 16 16 H 0.08 2.14 7.55 -2.39 -0.02 2.12 16 17 N -0.70 -12.81 5.11 -440.40 -2.25 -15.06 16 18 C 0.56 12.76 7.77 86.76 0.67 13.43 16 19 O -0.58 -18.06 15.95 -3.93 -0.06 -18.12 16 20 C -0.15 -2.71 5.87 -20.10 -0.12 -2.83 16 21 C -0.07 -0.93 9.44 22.27 0.21 -0.72 16 22 C -0.10 -1.52 9.95 22.30 0.22 -1.30 16 23 C 0.12 2.17 6.61 40.36 0.27 2.44 16 24 N -0.51 -8.50 10.33 -188.45 -1.95 -10.45 16 25 C 0.14 1.39 11.15 85.06 0.95 2.33 16 26 C -0.17 -1.25 10.03 22.14 0.22 -1.03 16 27 C -0.05 -0.59 9.89 22.53 0.22 -0.37 16 28 C -0.13 -2.15 5.74 -21.29 -0.12 -2.27 16 29 C -0.03 -0.54 9.34 22.81 0.21 -0.33 16 30 C -0.11 -2.39 6.19 31.32 0.19 -2.20 16 31 H 0.24 15.42 6.77 -92.71 -0.63 14.79 16 32 H 0.36 19.18 6.38 -92.71 -0.59 18.59 16 33 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.01 0.54 8.00 -2.39 -0.02 0.53 16 35 H 0.05 1.73 7.76 -2.39 -0.02 1.71 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.42 4.67 6.35 -92.71 -0.59 4.08 16 40 H 0.16 1.08 6.35 -2.91 -0.02 1.06 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 43 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 44 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.14 2.58 7.62 -2.91 -0.02 2.55 16 46 H 0.10 1.60 7.73 -2.39 -0.02 1.58 16 47 H 0.08 1.72 7.67 -2.38 -0.02 1.70 16 Total: -1.00 -80.25 386.36 1.40 -78.85 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.03 Total: 27.71 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 5.22 Total: -15.45 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.77 Total: -127.98 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.06 Total: -18.12 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 2.05 Total: 54.99 kcal Total: -80.25 1.40 -78.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486211238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.068 kcal (2) G-P(sol) polarization free energy of solvation -80.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds