Wall clock time and date at job start Sat Apr 11 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.67446 * 51.76317 * 11 10 9 13 13 C 1.54892 * 110.75662 * 288.32826 * 11 10 9 14 14 C 1.54265 * 104.19661 * 203.74296 * 13 11 10 15 15 C 1.53876 * 106.60079 * 23.60737 * 14 13 11 16 16 H 1.08993 * 110.07042 * 240.69513 * 15 14 13 17 17 N 1.46496 * 110.03240 * 119.28491 * 15 14 13 18 18 C 1.34776 * 120.00208 * 87.83478 * 17 15 14 19 19 O 1.21551 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47879 * 120.00354 * 180.02562 * 18 17 15 21 21 C 1.40580 * 119.70808 * 359.97438 * 20 18 17 22 22 C 1.35816 * 120.73881 * 179.97438 * 21 20 18 23 23 C 1.40542 * 119.98068 * 0.02562 * 22 21 20 24 24 C 1.40819 * 121.13629 * 179.97438 * 23 22 21 25 25 C 1.36550 * 118.20507 * 180.02562 * 24 23 22 26 26 C 1.39426 * 119.93653 * 359.97438 * 25 24 23 27 27 N 1.31016 * 121.71336 * 359.97438 * 26 25 24 28 28 C 1.33747 * 121.34861 * 0.02562 * 27 26 25 29 29 C 1.38402 * 119.70993 * 179.72549 * 20 18 17 30 30 C 1.54267 * 106.59638 * 359.97438 * 15 14 13 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 34 34 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 35 35 H 1.09003 * 110.48360 * 322.41744 * 13 11 10 36 36 H 1.09000 * 110.49056 * 85.05844 * 13 11 10 37 37 H 1.09001 * 110.03157 * 264.32151 * 14 13 11 38 38 H 1.09005 * 110.07518 * 142.91473 * 14 13 11 39 39 H 0.97002 * 120.00236 * 267.83510 * 17 15 14 40 40 H 1.08001 * 119.62514 * 0.02562 * 21 20 18 41 41 H 1.07997 * 120.00600 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.90060 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.03627 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.14116 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.23202 * 0.02562 * 29 20 18 46 46 H 1.08997 * 110.48787 * 217.71019 * 30 15 14 47 47 H 1.09004 * 110.48193 * 95.06776 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8794 -1.5003 0.8021 13 6 6.0729 -1.6431 -1.3738 14 6 7.5752 -1.9873 -1.4385 15 6 7.7959 -3.1739 -0.4840 16 1 8.4963 -2.8954 0.3032 17 7 8.3094 -4.3271 -1.2274 18 6 9.6365 -4.4738 -1.4111 19 8 10.4072 -3.6490 -0.9605 20 6 10.1548 -5.6375 -2.1620 21 6 9.2579 -6.5875 -2.6810 22 6 9.7110 -7.6639 -3.3742 23 6 11.0906 -7.8375 -3.5788 24 6 11.5870 -8.9447 -4.2934 25 6 12.9383 -9.0545 -4.4562 26 6 13.7847 -8.0843 -3.9212 27 7 13.3197 -7.0547 -3.2577 28 6 12.0070 -6.8879 -3.0627 29 6 11.5184 -5.7792 -2.3520 30 6 6.4199 -3.5089 0.1278 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3620 0.0007 33 1 3.8486 -3.0425 0.8909 34 1 3.8493 -3.0422 -0.8891 35 1 5.5329 -2.1389 -2.1805 36 1 5.9262 -0.5641 -1.4222 37 1 8.1685 -1.1321 -1.1145 38 1 7.8511 -2.2692 -2.4547 39 1 7.6943 -4.9851 -1.5873 40 1 8.1965 -6.4593 -2.5274 41 1 9.0114 -8.3862 -3.7681 42 1 10.9172 -9.6874 -4.7010 43 1 13.3511 -9.8916 -4.9997 44 1 14.8515 -8.1841 -4.0573 45 1 12.2022 -5.0441 -1.9539 46 1 6.5268 -3.7919 1.1750 47 1 5.9356 -4.3061 -0.4362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486216885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:41 Heat of formation + Delta-G solvation = 24.449775 kcal Electronic energy + Delta-G solvation = -27491.590708 eV Core-core repulsion = 23638.883159 eV Total energy + Delta-G solvation = -3852.707550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39715 -40.17219 -38.30889 -37.09397 -35.06160 -33.99036 -33.57220 -31.55381 -30.98584 -30.51789 -29.06377 -28.06395 -25.39555 -24.40193 -24.30590 -22.65048 -21.90626 -21.52808 -20.50721 -19.73982 -18.83325 -17.97286 -17.55325 -17.35428 -16.56988 -16.31326 -15.65241 -15.13270 -14.99362 -14.71249 -14.59751 -14.43174 -14.36394 -14.07105 -13.92599 -13.56721 -13.44296 -13.14032 -12.71034 -12.36513 -12.28594 -12.19662 -12.07424 -11.99751 -11.76034 -11.34515 -11.07209 -10.92275 -10.85468 -10.47995 -10.39094 -10.36266 -10.19797 -10.07202 -10.01075 -9.58407 -9.39277 -9.19037 -8.88271 -8.80195 -7.21495 -5.76344 -3.11393 -0.24061 0.12862 1.38957 2.02182 2.82938 2.94727 3.38209 3.41290 3.46157 3.63190 3.76494 4.02498 4.16518 4.31376 4.34570 4.42168 4.55375 4.59881 4.60298 4.64233 4.71959 4.92927 4.95296 5.24364 5.29598 5.33913 5.38577 5.46756 5.50817 5.51100 5.54948 5.59444 5.69798 5.73508 5.79364 5.81624 5.88501 5.97027 5.98612 6.04276 6.18317 6.21865 6.32414 6.43032 6.47257 6.69351 6.80482 7.24033 7.38165 7.94097 8.00192 8.42970 9.22586 9.95145 10.15279 11.42140 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.001760 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.208599 B =15901.327015 C =16419.090631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.079 0.921 13 C -0.115 4.115 14 C -0.134 4.134 15 C 0.140 3.860 16 H 0.093 0.907 17 N -0.715 5.715 18 C 0.556 3.444 19 O -0.532 6.532 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.099 4.099 23 C -0.088 4.088 24 C -0.061 4.061 25 C -0.168 4.168 26 C 0.130 3.870 27 N -0.466 5.466 28 C 0.116 3.884 29 C -0.023 4.023 30 C -0.120 4.120 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.074 0.926 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.883 -21.034 -9.392 35.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.120 4.120 12 H 0.097 0.903 13 C -0.153 4.153 14 C -0.173 4.173 15 C 0.036 3.964 16 H 0.111 0.889 17 N -0.367 5.367 18 C 0.343 3.657 19 O -0.410 6.410 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.090 4.090 24 C -0.087 4.087 25 C -0.188 4.188 26 C -0.043 4.043 27 N -0.174 5.174 28 C -0.005 4.005 29 C -0.042 4.042 30 C -0.159 4.159 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.236 0.764 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.670 -19.802 -8.655 35.109 hybrid contribution -0.374 0.198 -0.632 0.761 sum 27.296 -19.604 -9.287 34.866 Atomic orbital electron populations 1.69706 1.05106 1.25793 1.57711 1.24671 0.95238 0.97210 1.02098 0.86546 0.79229 0.84961 0.77796 1.21093 1.20284 1.21763 1.19064 0.80728 0.94695 1.42866 0.89291 1.42694 1.03968 1.02289 1.91115 1.20610 0.87755 0.89284 0.98467 1.22320 0.96113 0.95849 0.97682 0.90295 1.22391 0.93869 1.01482 0.97512 1.22594 0.97490 0.97727 0.99455 1.21761 0.95798 0.84953 0.93858 0.88924 1.46142 1.06624 1.27313 1.56579 1.18188 0.82644 0.85090 0.79769 1.90797 1.56731 1.43617 1.49818 1.19946 0.93923 0.96566 1.01698 1.20994 0.99713 0.93583 0.96623 1.20895 0.93720 0.98277 0.98863 1.18977 0.94842 0.96025 0.99148 1.21544 0.96068 0.95967 0.95082 1.22000 0.94375 1.00976 1.01457 1.23053 1.00837 0.88842 0.91599 1.68047 1.13862 1.21640 1.13845 1.18777 0.88981 0.94789 0.97911 1.21261 0.94429 0.95194 0.93339 1.22616 0.93407 0.98689 1.01168 0.93096 0.80650 0.95569 0.95571 0.91186 0.91448 0.91276 0.91596 0.76446 0.84883 0.84450 0.84028 0.84195 0.82066 0.83128 0.90727 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.45 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.20 27.74 -169.99 -4.71 17.49 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.76 -17.74 5.33 -59.91 -0.32 -18.06 16 10 C 0.17 3.07 5.70 -4.05 -0.02 3.04 16 11 C -0.10 -1.44 2.91 -88.64 -0.26 -1.69 16 12 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.11 -1.59 6.20 -25.07 -0.16 -1.74 16 14 C -0.13 -1.62 6.59 -25.61 -0.17 -1.79 16 15 C 0.14 1.57 3.25 -66.81 -0.22 1.35 16 16 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 17 N -0.71 -6.92 4.93 -53.66 -0.26 -7.18 16 18 C 0.56 6.47 7.76 -12.31 -0.10 6.37 16 19 O -0.53 -8.13 15.95 5.32 0.08 -8.05 16 20 C -0.12 -1.13 5.87 -105.01 -0.62 -1.75 16 21 C -0.09 -0.64 9.44 -39.57 -0.37 -1.01 16 22 C -0.10 -0.62 9.74 -39.58 -0.39 -1.01 16 23 C -0.09 -0.68 5.75 -106.73 -0.61 -1.29 16 24 C -0.06 -0.32 9.88 -39.22 -0.39 -0.71 16 25 C -0.17 -0.79 10.03 -39.75 -0.40 -1.19 16 26 C 0.13 0.83 11.15 -17.46 -0.19 0.64 16 27 N -0.47 -4.59 10.34 -10.98 -0.11 -4.70 16 28 C 0.12 1.16 6.60 -84.87 -0.56 0.60 16 29 C -0.02 -0.24 9.56 -38.68 -0.37 -0.61 16 30 C -0.12 -1.32 5.97 -25.09 -0.15 -1.47 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.49 7.99 -51.93 -0.41 0.07 16 35 H 0.07 0.99 7.93 -51.93 -0.41 0.57 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 39 H 0.40 2.80 6.34 -40.82 -0.26 2.55 16 40 H 0.13 0.60 6.34 -52.49 -0.33 0.27 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.14 0.23 8.06 -52.48 -0.42 -0.20 16 44 H 0.16 0.54 8.06 -52.49 -0.42 0.11 16 45 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.73 7.64 -51.93 -0.40 0.34 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -35.80 385.53 -10.60 -46.41 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.64 Total: 6.27 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -5.22 Total: -9.31 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.08 Total: -58.62 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.08 Total: -8.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.80 -10.60 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486216885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.856 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds