Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.67446 * 51.76317 * 11 10 9 13 13 C 1.54892 * 110.75662 * 288.32826 * 11 10 9 14 14 C 1.54265 * 104.19661 * 203.74296 * 13 11 10 15 15 C 1.53876 * 106.60079 * 23.60737 * 14 13 11 16 16 H 1.08993 * 110.07042 * 240.69513 * 15 14 13 17 17 N 1.46496 * 110.03240 * 119.28491 * 15 14 13 18 18 C 1.34776 * 120.00208 * 87.83478 * 17 15 14 19 19 O 1.21551 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47879 * 120.00354 * 180.02562 * 18 17 15 21 21 C 1.40580 * 119.70808 * 359.97438 * 20 18 17 22 22 C 1.35816 * 120.73881 * 179.97438 * 21 20 18 23 23 C 1.40542 * 119.98068 * 0.02562 * 22 21 20 24 24 C 1.40819 * 121.13629 * 179.97438 * 23 22 21 25 25 C 1.36550 * 118.20507 * 180.02562 * 24 23 22 26 26 C 1.39426 * 119.93653 * 359.97438 * 25 24 23 27 27 N 1.31016 * 121.71336 * 359.97438 * 26 25 24 28 28 C 1.33747 * 121.34861 * 0.02562 * 27 26 25 29 29 C 1.38402 * 119.70993 * 179.72549 * 20 18 17 30 30 C 1.54267 * 106.59638 * 359.97438 * 15 14 13 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 34 34 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 35 35 H 1.09003 * 110.48360 * 322.41744 * 13 11 10 36 36 H 1.09000 * 110.49056 * 85.05844 * 13 11 10 37 37 H 1.09001 * 110.03157 * 264.32151 * 14 13 11 38 38 H 1.09005 * 110.07518 * 142.91473 * 14 13 11 39 39 H 0.97002 * 120.00236 * 267.83510 * 17 15 14 40 40 H 1.08001 * 119.62514 * 0.02562 * 21 20 18 41 41 H 1.07997 * 120.00600 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.90060 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.03627 * 180.02562 * 25 24 23 44 44 H 1.08001 * 119.14116 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.23202 * 0.02562 * 29 20 18 46 46 H 1.08997 * 110.48787 * 217.71019 * 30 15 14 47 47 H 1.09004 * 110.48193 * 95.06776 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8794 -1.5003 0.8021 13 6 6.0729 -1.6431 -1.3738 14 6 7.5752 -1.9873 -1.4385 15 6 7.7959 -3.1739 -0.4840 16 1 8.4963 -2.8954 0.3032 17 7 8.3094 -4.3271 -1.2274 18 6 9.6365 -4.4738 -1.4111 19 8 10.4072 -3.6490 -0.9605 20 6 10.1548 -5.6375 -2.1620 21 6 9.2579 -6.5875 -2.6810 22 6 9.7110 -7.6639 -3.3742 23 6 11.0906 -7.8375 -3.5788 24 6 11.5870 -8.9447 -4.2934 25 6 12.9383 -9.0545 -4.4562 26 6 13.7847 -8.0843 -3.9212 27 7 13.3197 -7.0547 -3.2577 28 6 12.0070 -6.8879 -3.0627 29 6 11.5184 -5.7792 -2.3520 30 6 6.4199 -3.5089 0.1278 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3620 0.0007 33 1 3.8486 -3.0425 0.8909 34 1 3.8493 -3.0422 -0.8891 35 1 5.5329 -2.1389 -2.1805 36 1 5.9262 -0.5641 -1.4222 37 1 8.1685 -1.1321 -1.1145 38 1 7.8511 -2.2692 -2.4547 39 1 7.6943 -4.9851 -1.5873 40 1 8.1965 -6.4593 -2.5274 41 1 9.0114 -8.3862 -3.7681 42 1 10.9172 -9.6874 -4.7010 43 1 13.3511 -9.8916 -4.9997 44 1 14.8515 -8.1841 -4.0573 45 1 12.2022 -5.0441 -1.9539 46 1 6.5268 -3.7919 1.1750 47 1 5.9356 -4.3061 -0.4362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486216885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 0.678352 kcal Electronic energy + Delta-G solvation = -27492.621515 eV Core-core repulsion = 23638.883159 eV Total energy + Delta-G solvation = -3853.738356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.97591 -41.01615 -39.34395 -37.74210 -36.62581 -34.89214 -34.48991 -33.31746 -31.79521 -31.05670 -30.34784 -29.14072 -26.49052 -25.49418 -24.88744 -23.67091 -23.21911 -22.33972 -21.54089 -20.87811 -19.69294 -19.39721 -18.51369 -17.94583 -17.34689 -17.14018 -16.71615 -16.43938 -15.97748 -15.83329 -15.50676 -15.30478 -15.15011 -14.95795 -14.93283 -14.61781 -14.54788 -14.22199 -13.93306 -13.74315 -13.55143 -12.98483 -12.95062 -12.84142 -12.68622 -12.60068 -12.53731 -12.14517 -11.96779 -11.81742 -11.67360 -11.57911 -11.55543 -11.46652 -11.13911 -10.93884 -10.51247 -10.21162 -9.83111 -9.35164 -9.26058 -8.01831 -5.34134 -0.80026 -0.38225 0.84560 1.38386 1.40963 1.42868 1.48357 2.00215 2.23543 2.48972 3.06929 3.25360 3.29845 3.49043 3.51065 3.54616 3.65373 3.80241 3.84245 3.93368 3.99354 4.02984 4.06052 4.26334 4.38975 4.48385 4.51468 4.56316 4.57596 4.63295 4.72140 4.73265 4.86233 4.91754 4.92070 5.02429 5.07691 5.11509 5.13067 5.14844 5.20643 5.30484 5.33493 5.48401 5.51545 5.57190 5.76069 5.77733 6.22753 6.45510 6.89106 7.10026 7.10905 7.87813 8.05769 9.19717 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030061 B = 0.001760 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.208599 B =15901.327015 C =16419.090631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.251 1.251 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.058 0.942 9 N -0.759 5.759 10 C 0.163 3.837 11 C -0.095 4.095 12 H 0.076 0.924 13 C -0.112 4.112 14 C -0.126 4.126 15 C 0.146 3.854 16 H 0.080 0.920 17 N -0.700 5.700 18 C 0.555 3.445 19 O -0.578 6.578 20 C -0.122 4.122 21 C -0.098 4.098 22 C -0.085 4.085 23 C -0.102 4.102 24 C -0.059 4.059 25 C -0.163 4.163 26 C 0.126 3.874 27 N -0.513 5.513 28 C 0.092 3.908 29 C -0.050 4.050 30 C -0.107 4.107 31 H 0.257 0.743 32 H 0.365 0.635 33 H 0.026 0.974 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.415 0.585 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.179 0.821 43 H 0.178 0.822 44 H 0.186 0.814 45 H 0.124 0.876 46 H 0.086 0.914 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.039 -23.556 -10.893 38.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.176 1.176 6 H -0.223 1.223 7 C -0.363 4.363 8 H 0.076 0.924 9 N -0.404 5.404 10 C 0.037 3.963 11 C -0.114 4.114 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.165 4.165 15 C 0.041 3.959 16 H 0.099 0.901 17 N -0.352 5.352 18 C 0.343 3.657 19 O -0.459 6.459 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.183 4.183 26 C -0.047 4.047 27 N -0.222 5.222 28 C -0.028 4.028 29 C -0.070 4.070 30 C -0.146 4.146 31 H 0.066 0.934 32 H 0.198 0.802 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.179 0.821 41 H 0.193 0.807 42 H 0.196 0.804 43 H 0.195 0.805 44 H 0.203 0.797 45 H 0.142 0.858 46 H 0.104 0.896 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 28.851 -22.376 -10.166 37.900 hybrid contribution -0.670 0.790 -0.223 1.059 sum 28.181 -21.586 -10.390 36.987 Atomic orbital electron populations 1.69884 1.07085 1.26584 1.59944 1.25484 0.96093 1.01162 1.02851 0.85443 0.78720 0.79802 0.78051 1.20590 1.17605 1.22334 1.19074 0.82877 0.93470 1.40927 0.92377 1.42739 1.02388 1.04395 1.90887 1.20803 0.89960 0.87191 0.98372 1.22205 0.93470 0.97785 0.97963 0.90561 1.22336 0.94861 1.00597 0.97142 1.22506 0.96170 0.97985 0.99849 1.21581 0.95665 0.85153 0.93473 0.90142 1.45966 1.06278 1.27099 1.55841 1.18530 0.82781 0.85101 0.79241 1.90770 1.57917 1.45385 1.51817 1.19863 0.93950 0.96678 1.02149 1.21239 1.00490 0.93177 0.96678 1.21339 0.93631 0.98174 0.97171 1.19303 0.95339 0.96369 0.99404 1.22014 0.96990 0.95517 0.93908 1.22414 0.94156 1.01152 1.00550 1.23661 1.02545 0.88226 0.90261 1.68014 1.14310 1.23807 1.16085 1.18891 0.89790 0.95353 0.98787 1.21166 0.94782 0.95881 0.95213 1.22527 0.92418 0.97333 1.02302 0.93419 0.80218 0.95587 0.95223 0.91222 0.92780 0.91823 0.91306 0.74561 0.82115 0.80654 0.80396 0.80494 0.79695 0.85841 0.89584 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.26 13.97 21.65 0.30 -62.96 16 2 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.95 45.76 27.74 68.60 1.90 47.66 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 6 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 7 C -0.23 -13.23 10.47 84.03 0.88 -12.35 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 N -0.76 -34.85 5.33 -343.47 -1.83 -36.67 16 10 C 0.16 5.75 5.70 86.38 0.49 6.25 16 11 C -0.10 -2.53 2.91 -9.51 -0.03 -2.56 16 12 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.11 -2.90 6.20 31.67 0.20 -2.70 16 14 C -0.13 -2.90 6.59 31.32 0.21 -2.70 16 15 C 0.15 3.04 3.25 45.72 0.15 3.19 16 16 H 0.08 1.94 7.56 -2.39 -0.02 1.93 16 17 N -0.70 -12.45 4.93 -441.95 -2.18 -14.63 16 18 C 0.56 13.02 7.76 86.80 0.67 13.69 16 19 O -0.58 -18.60 15.95 -3.88 -0.06 -18.66 16 20 C -0.12 -2.39 5.87 -20.11 -0.12 -2.51 16 21 C -0.10 -1.15 9.44 22.28 0.21 -0.94 16 22 C -0.08 -0.80 9.74 22.27 0.22 -0.58 16 23 C -0.10 -1.38 5.75 -21.23 -0.12 -1.50 16 24 C -0.06 -0.41 9.88 22.51 0.22 -0.19 16 25 C -0.16 -1.00 10.03 22.16 0.22 -0.78 16 26 C 0.13 1.46 11.15 85.10 0.95 2.40 16 27 N -0.51 -10.45 10.34 -188.64 -1.95 -12.40 16 28 C 0.09 1.88 6.60 40.25 0.27 2.14 16 29 C -0.05 -1.17 9.56 22.85 0.22 -0.95 16 30 C -0.11 -2.09 5.97 31.66 0.19 -1.90 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.36 16.14 5.53 -92.71 -0.51 15.63 16 33 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.03 1.05 7.99 -2.39 -0.02 1.03 16 35 H 0.07 1.82 7.93 -2.39 -0.02 1.80 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.55 7.92 -2.38 -0.02 1.53 16 39 H 0.42 4.64 6.34 -92.71 -0.59 4.05 16 40 H 0.16 0.86 6.34 -2.91 -0.02 0.84 16 41 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 42 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 43 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 44 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 45 H 0.12 3.34 7.60 -2.91 -0.02 3.32 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.09 1.50 7.64 -2.38 -0.02 1.48 16 Total: -1.00 -82.25 385.53 1.32 -80.93 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.16 Total: 22.06 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.29 Total: -5.32 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.66 Total: -126.67 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.06 Total: -18.66 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -82.25 1.32 -80.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486216885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.611 kcal (2) G-P(sol) polarization free energy of solvation -82.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds