Wall clock time and date at job start Sat Apr 11 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48494 * 109.47073 * 274.45400 * 3 2 1 5 5 H 1.48499 * 109.47215 * 34.45369 * 3 2 1 6 6 H 1.48496 * 109.47293 * 154.45531 * 3 2 1 7 7 C 1.38816 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99726 * 164.49473 * 7 2 1 9 9 N 1.36935 * 119.99850 * 344.49567 * 7 2 1 10 10 C 1.47004 * 121.37574 * 335.97906 * 9 7 2 11 11 C 1.50328 * 109.16350 * 222.96554 * 10 9 7 12 12 C 1.29448 * 123.65066 * 349.02561 * 11 10 9 13 13 C 1.50702 * 117.69382 * 180.85576 * 12 11 10 14 14 N 1.46501 * 109.47236 * 94.99578 * 13 12 11 15 15 C 1.34776 * 120.00005 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00143 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00041 * 180.02562 * 15 14 13 18 18 N 1.46495 * 109.47002 * 180.02562 * 17 15 14 19 19 C 1.36830 * 125.06266 * 265.29770 * 18 17 15 20 20 C 1.34242 * 109.93203 * 180.15234 * 19 18 17 21 21 C 1.46488 * 106.99132 * 359.60589 * 20 19 18 22 22 C 1.39635 * 134.02621 * 180.22083 * 21 20 19 23 23 C 1.36617 * 119.76493 * 179.97438 * 22 21 20 24 24 C 1.38834 * 120.52617 * 0.04162 * 23 22 21 25 25 C 1.37740 * 120.66745 * 359.97438 * 24 23 22 26 26 C 1.37688 * 125.06517 * 85.00664 * 18 17 15 27 27 C 1.49972 * 124.61383 * 1.13460 * 12 11 10 28 28 C 1.47339 * 121.37130 * 155.99948 * 9 7 2 29 29 H 0.97001 * 119.99512 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.52393 * 103.06471 * 10 9 7 31 31 H 1.08994 * 109.52375 * 342.87222 * 10 9 7 32 32 H 1.07999 * 118.17230 * 168.99850 * 11 10 9 33 33 H 1.09009 * 109.47138 * 334.99911 * 13 12 11 34 34 H 1.09004 * 109.47299 * 214.99968 * 13 12 11 35 35 H 0.96997 * 119.99871 * 0.02562 * 14 13 12 36 36 H 1.09004 * 109.46649 * 60.00328 * 17 15 14 37 37 H 1.09004 * 109.47051 * 300.00336 * 17 15 14 38 38 H 1.07999 * 125.03615 * 0.03072 * 19 18 17 39 39 H 1.07994 * 126.50395 * 179.87365 * 20 19 18 40 40 H 1.08002 * 120.11342 * 0.02562 * 22 21 20 41 41 H 1.07997 * 119.73850 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.66130 * 179.97438 * 24 23 22 43 43 H 1.08001 * 120.10944 * 179.97438 * 25 24 23 44 44 H 1.08994 * 109.31096 * 101.01117 * 27 12 11 45 45 H 1.09004 * 109.31330 * 220.43922 * 27 12 11 46 46 H 1.09007 * 109.77861 * 237.78698 * 28 9 7 47 47 H 1.08995 * 109.78220 * 358.59318 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4036 2.1007 -1.3958 5 1 1.4980 2.6236 0.7921 6 1 3.5917 1.4148 0.6037 7 6 2.0103 -1.2022 0.0005 8 1 3.0608 -1.2193 -0.2495 9 7 1.3630 -2.3663 0.3181 10 6 0.1447 -2.3648 1.1408 11 6 0.2251 -3.4817 2.1437 12 6 1.1208 -4.4155 2.1071 13 6 1.0646 -5.4820 3.1704 14 7 0.3207 -6.6379 2.6638 15 6 0.1423 -7.7203 3.4468 16 8 0.5973 -7.7372 4.5709 17 6 -0.6225 -8.9097 2.9256 18 7 -0.6772 -9.9463 3.9592 19 6 0.1943 -10.9956 4.0671 20 6 -0.1379 -11.7602 5.1193 21 6 -1.3130 -11.1452 5.7413 22 6 -2.1028 -11.4624 6.8482 23 6 -3.1608 -10.6633 7.1778 24 6 -3.4578 -9.5384 6.4202 25 6 -2.6921 -9.2072 5.3242 26 6 -1.6098 -10.0067 4.9704 27 6 2.2141 -4.5077 1.0847 28 6 1.8590 -3.6722 -0.1504 29 1 -0.4849 0.8401 -0.0004 30 1 -0.7264 -2.5109 0.5021 31 1 0.0590 -1.4119 1.6629 32 1 -0.5048 -3.5061 2.9394 33 1 0.5645 -5.0872 4.0549 34 1 2.0776 -5.7880 3.4320 35 1 -0.0429 -6.6246 1.7647 36 1 -0.1221 -9.3040 2.0411 37 1 -1.6356 -8.6040 2.6640 38 1 1.0251 -11.1823 3.4028 39 1 0.3680 -12.6560 5.4477 40 1 -1.8776 -12.3358 7.4422 41 1 -3.7712 -10.9088 8.0342 42 1 -4.2978 -8.9167 6.6932 43 1 -2.9315 -8.3303 4.7410 44 1 3.1444 -4.1403 1.5177 45 1 2.3439 -5.5486 0.7885 46 1 1.0845 -4.1747 -0.7301 47 1 2.7474 -3.5302 -0.7658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486520431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:52 Heat of formation + Delta-G solvation = 53.668214 kcal Electronic energy + Delta-G solvation = -27970.115817 eV Core-core repulsion = 24118.675274 eV Total energy + Delta-G solvation = -3851.440543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.32814 -40.70193 -39.34688 -37.85535 -36.44469 -34.61559 -33.88633 -32.66088 -31.52042 -31.31650 -29.79516 -29.01123 -27.55609 -25.67921 -24.39472 -23.61654 -22.90649 -22.50196 -21.91656 -21.02325 -19.53645 -18.79654 -18.20813 -17.41708 -17.37376 -17.03680 -16.76583 -16.41822 -16.27546 -15.89852 -15.54077 -15.30456 -15.18271 -14.89644 -14.79578 -14.52747 -14.37744 -13.99932 -13.95227 -13.68212 -13.48975 -13.28268 -13.10424 -12.87798 -12.81264 -12.59793 -12.51023 -12.47445 -12.25109 -12.12613 -11.74353 -11.72252 -11.33421 -11.18401 -10.70053 -10.55614 -10.18752 -9.68533 -9.07988 -8.76102 -8.56534 -7.90218 -5.30864 0.23603 0.69797 1.12559 1.45234 1.47502 1.47550 1.56594 1.67858 1.90476 2.44420 2.49834 3.02864 3.27313 3.60430 3.66156 3.76711 3.80317 3.87430 3.94234 3.99742 4.13161 4.18380 4.29912 4.40635 4.52492 4.57113 4.60121 4.61816 4.71522 4.79887 4.82327 4.90492 4.95001 5.07517 5.09234 5.18563 5.20474 5.29543 5.39087 5.47121 5.57661 5.60375 5.71364 5.74775 5.86752 5.89559 6.14122 6.30249 6.32100 6.32705 6.52099 7.12246 7.12994 7.82655 8.35592 9.18304 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.001930 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.510453 B =14504.204290 C =15132.296851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.141 4.141 12 C -0.137 4.137 13 C 0.170 3.830 14 N -0.705 5.705 15 C 0.491 3.509 16 O -0.576 6.576 17 C 0.093 3.907 18 N -0.474 5.474 19 C 0.057 3.943 20 C -0.223 4.223 21 C -0.137 4.137 22 C -0.086 4.086 23 C -0.155 4.155 24 C -0.110 4.110 25 C -0.144 4.144 26 C 0.082 3.918 27 C -0.083 4.083 28 C 0.138 3.862 29 H 0.249 0.751 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.417 0.583 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.198 0.802 39 H 0.163 0.837 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.121 0.879 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.032 0.968 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 -24.893 7.135 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.162 4.162 12 C -0.138 4.138 13 C 0.046 3.954 14 N -0.358 5.358 15 C 0.277 3.723 16 O -0.455 6.455 17 C -0.032 4.032 18 N -0.157 5.157 19 C -0.067 4.067 20 C -0.247 4.247 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.174 4.174 24 C -0.129 4.129 25 C -0.165 4.165 26 C -0.023 4.023 27 C -0.122 4.122 28 C 0.013 3.987 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.179 0.821 37 H 0.154 0.846 38 H 0.215 0.785 39 H 0.181 0.819 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.050 0.950 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.657 -24.539 7.661 25.966 hybrid contribution 0.098 1.626 -0.374 1.671 sum -3.560 -22.914 7.287 24.307 Atomic orbital electron populations 1.70159 1.06439 1.25750 1.56197 1.25729 0.96184 1.01308 1.01773 0.85275 0.78097 0.79804 0.77380 1.21214 1.22038 1.19650 1.19500 0.92548 0.85660 1.40860 0.91229 1.44414 1.29425 1.02212 1.57946 1.19401 0.87791 0.94898 0.89965 1.22945 0.98221 0.96155 0.98845 1.20582 0.98239 0.96539 0.98460 1.20181 0.96420 0.84412 0.94371 1.45961 1.55993 1.15179 1.18688 1.21559 0.80441 0.84916 0.85431 1.90766 1.51345 1.82219 1.21169 1.21852 1.04449 0.85677 0.91204 1.43583 1.25031 1.22496 1.24628 1.22351 0.95734 0.87969 1.00642 1.21975 0.99593 1.04032 0.99129 1.19668 0.99234 0.97113 0.98155 1.20576 0.94482 1.00141 0.95249 1.20945 0.98925 0.95970 1.01521 1.21128 0.99671 0.97736 0.94364 1.20257 0.95706 1.00111 1.00380 1.18512 0.94030 0.98208 0.91598 1.20727 0.96076 1.00529 0.94870 1.21195 0.97450 0.85700 0.94359 0.94139 0.96615 0.92676 0.87172 0.92602 0.91503 0.74603 0.82056 0.84578 0.78479 0.81905 0.84496 0.83853 0.83957 0.86139 0.92081 0.88997 0.95028 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.51 11.08 21.65 0.24 -54.27 16 2 C -0.06 -3.04 5.01 84.86 0.43 -2.61 16 3 Si 0.97 44.50 29.58 68.60 2.03 46.52 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.26 -13.76 9.71 84.03 0.82 -12.95 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.62 -29.79 3.01 -703.04 -2.11 -31.90 16 10 C 0.20 9.53 5.23 85.42 0.45 9.98 16 11 C -0.14 -5.00 9.47 27.11 0.26 -4.74 16 12 C -0.14 -4.12 5.22 -15.13 -0.08 -4.20 16 13 C 0.17 4.36 5.66 85.63 0.48 4.84 16 14 N -0.71 -13.77 5.55 -466.76 -2.59 -16.36 16 15 C 0.49 10.60 7.90 87.66 0.69 11.30 16 16 O -0.58 -18.70 16.42 -3.02 -0.05 -18.75 16 17 C 0.09 1.26 6.48 85.64 0.55 1.82 16 18 N -0.47 -9.45 2.27 -519.99 -1.18 -10.63 16 19 C 0.06 1.01 11.28 83.00 0.94 1.94 16 20 C -0.22 -4.41 11.08 23.51 0.26 -4.15 16 21 C -0.14 -3.27 6.37 -20.20 -0.13 -3.40 16 22 C -0.09 -1.77 10.05 22.23 0.22 -1.55 16 23 C -0.15 -2.90 9.97 22.03 0.22 -2.68 16 24 C -0.11 -2.18 10.01 22.29 0.22 -1.96 16 25 C -0.14 -3.26 10.00 22.37 0.22 -3.04 16 26 C 0.08 1.99 6.80 39.03 0.27 2.26 16 27 C -0.08 -2.47 5.95 29.72 0.18 -2.30 16 28 C 0.14 5.18 6.59 86.31 0.57 5.75 16 29 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 2.96 6.41 -2.39 -0.02 2.94 16 32 H 0.11 3.52 7.73 -2.91 -0.02 3.50 16 33 H 0.06 1.59 7.78 -2.38 -0.02 1.57 16 34 H 0.07 1.78 8.11 -2.38 -0.02 1.76 16 35 H 0.42 5.97 8.46 -92.71 -0.78 5.18 16 36 H 0.16 0.86 8.12 -2.38 -0.02 0.84 16 37 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 43 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.06 2.16 7.96 -2.39 -0.02 2.14 16 Total: -1.00 -75.88 391.82 3.09 -72.79 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.19 Total: 18.28 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 6.57 Total: -5.69 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -5.64 Total: -113.15 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -75.88 3.09 -72.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486520431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.453 kcal (2) G-P(sol) polarization free energy of solvation -75.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds