Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48496 * 109.46966 * 275.33694 * 3 2 1 5 5 H 1.48499 * 109.46665 * 35.33601 * 3 2 1 6 6 H 1.48497 * 109.47351 * 155.33382 * 3 2 1 7 7 C 1.38815 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99947 * 339.49850 * 7 2 1 9 9 N 1.36933 * 120.00292 * 159.48900 * 7 2 1 10 10 C 1.46493 * 120.00194 * 321.34636 * 9 7 2 11 11 C 1.53002 * 109.46966 * 270.26789 * 10 9 7 12 12 C 1.52997 * 109.46919 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.46825 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99841 * 180.02562 * 13 12 11 15 15 O 1.21544 * 120.00186 * 359.97438 * 14 13 12 16 16 C 1.47943 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.32202 * 120.15782 * 5.58339 * 16 14 13 18 18 C 1.32032 * 122.68168 * 179.97438 * 17 16 14 19 19 C 1.36684 * 122.02912 * 0.02562 * 18 17 16 20 20 C 1.40533 * 118.84852 * 359.97438 * 19 18 17 21 21 C 1.40320 * 122.22539 * 180.02562 * 20 19 18 22 22 C 1.36196 * 119.45606 * 180.02562 * 21 20 19 23 23 C 1.39381 * 121.00466 * 0.02562 * 22 21 20 24 24 C 1.36261 * 121.07979 * 359.97438 * 23 22 21 25 25 C 1.40100 * 119.53669 * 359.74487 * 24 23 22 26 26 C 1.46507 * 119.99583 * 141.61116 * 9 7 2 27 27 C 1.52993 * 117.50007 * 2.93988 * 26 9 7 28 28 C 1.52996 * 117.50205 * 294.31540 * 26 9 7 29 29 H 0.97002 * 120.00290 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47359 * 30.26995 * 10 9 7 31 31 H 1.09003 * 109.47302 * 150.26861 * 10 9 7 32 32 H 1.08999 * 109.47250 * 300.00272 * 11 10 9 33 33 H 1.09000 * 109.46603 * 60.00145 * 11 10 9 34 34 H 1.08999 * 109.47485 * 300.00254 * 12 11 10 35 35 H 1.09000 * 109.47262 * 60.00675 * 12 11 10 36 36 H 0.96993 * 120.00313 * 0.02562 * 13 12 11 37 37 H 1.07998 * 118.98212 * 180.02562 * 18 17 16 38 38 H 1.07997 * 120.57339 * 179.97438 * 19 18 17 39 39 H 1.08008 * 120.26931 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.49781 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.46185 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.23220 * 179.97438 * 24 23 22 43 43 H 1.09005 * 115.54421 * 148.64734 * 26 9 7 44 44 H 1.08996 * 117.50201 * 0.02562 * 27 26 9 45 45 H 1.08998 * 117.49878 * 145.01462 * 27 26 9 46 46 H 1.09003 * 117.49752 * 214.97967 * 28 26 9 47 47 H 1.08998 * 117.49694 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3849 2.1115 -1.3940 5 1 1.5085 2.6174 0.8098 6 1 3.5995 1.4103 0.5843 7 6 2.0103 -1.2021 0.0005 8 1 1.5216 -2.1077 0.3285 9 7 3.3145 -1.2399 -0.4149 10 6 3.7446 -0.4243 -1.5533 11 6 3.5709 -1.2225 -2.8470 12 6 4.0195 -0.3705 -4.0360 13 7 3.8526 -1.1346 -5.2749 14 6 4.1863 -0.5817 -6.4578 15 8 4.6252 0.5511 -6.4969 16 6 4.0183 -1.3534 -7.7088 17 7 3.4398 -2.5419 -7.6834 18 6 3.2640 -3.2726 -8.7689 19 6 3.6715 -2.8478 -10.0025 20 6 4.2960 -1.5940 -10.1158 21 6 4.7414 -1.0884 -11.3466 22 6 5.3402 0.1341 -11.3913 23 6 5.5173 0.8896 -10.2334 24 6 5.0968 0.4291 -9.0219 25 6 4.4713 -0.8217 -8.9376 26 6 4.2786 -2.1004 0.2754 27 6 3.7523 -2.9838 1.4083 28 6 4.6142 -1.7611 1.7290 29 1 -0.4851 0.8400 -0.0004 30 1 3.1394 0.4810 -1.6010 31 1 4.7935 -0.1541 -1.4311 32 1 4.1761 -2.1279 -2.7994 33 1 2.5220 -1.4926 -2.9692 34 1 3.4140 0.5346 -4.0835 35 1 5.0683 -0.1000 -3.9141 36 1 3.5020 -2.0385 -5.2437 37 1 2.7834 -4.2356 -8.6793 38 1 3.5162 -3.4650 -10.8750 39 1 4.6113 -1.6643 -12.2510 40 1 5.6829 0.5241 -12.3383 41 1 5.9949 1.8561 -10.2976 42 1 5.2414 1.0257 -8.1333 43 1 5.0795 -2.5016 -0.3456 44 1 2.6889 -2.9252 1.6398 45 1 4.2069 -3.9666 1.5327 46 1 5.6359 -1.9394 2.0645 47 1 4.1181 -0.8973 2.1716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490382553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 76.725286 kcal Electronic energy + Delta-G solvation = -28024.186107 eV Core-core repulsion = 24173.745393 eV Total energy + Delta-G solvation = -3850.440713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.36585 -39.31120 -37.65715 -37.40320 -35.51308 -33.69527 -33.24896 -31.88974 -31.45063 -30.35222 -29.48228 -26.03189 -24.75118 -23.85138 -23.71832 -22.82487 -21.64912 -21.20641 -20.80853 -19.62059 -18.41307 -17.71435 -17.35220 -16.59123 -16.10204 -15.88974 -15.75444 -15.42952 -15.29165 -14.84799 -14.57966 -14.50645 -14.02794 -13.78105 -13.59683 -13.44966 -13.13659 -12.71439 -12.45512 -12.42354 -12.18628 -12.14535 -12.08885 -11.74250 -11.16896 -11.07248 -10.82101 -10.66411 -10.46870 -10.36198 -10.20975 -9.97607 -9.74243 -9.58720 -9.44219 -9.43401 -9.41415 -9.02166 -8.53999 -8.37008 -6.75642 -6.03561 -3.48065 -0.21966 0.57811 1.44544 2.45784 3.01062 3.02977 3.29195 3.45726 3.51363 3.83603 3.92650 4.24829 4.44678 4.47074 4.48034 4.57472 4.73063 4.80977 4.85918 4.89758 5.00906 5.13531 5.26012 5.38379 5.46377 5.49337 5.55755 5.71713 5.77799 5.78147 5.80719 5.96621 6.00303 6.04931 6.07574 6.13001 6.20745 6.29437 6.34367 6.42161 6.49170 6.50521 6.64132 6.71875 6.88912 6.93093 7.11084 7.33778 7.63294 8.02212 8.14478 8.36564 8.94777 9.66162 10.05926 11.11088 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002301 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.859815 B =12164.088088 C =12630.694903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.039 3.961 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.270 4.270 8 H 0.083 0.917 9 N -0.573 5.573 10 C 0.145 3.855 11 C -0.147 4.147 12 C 0.115 3.885 13 N -0.697 5.697 14 C 0.569 3.431 15 O -0.533 6.533 16 C 0.127 3.873 17 N -0.456 5.456 18 C 0.075 3.925 19 C -0.134 4.134 20 C -0.031 4.031 21 C -0.121 4.121 22 C -0.094 4.094 23 C -0.124 4.124 24 C -0.089 4.089 25 C -0.073 4.073 26 C 0.120 3.880 27 C -0.188 4.188 28 C -0.224 4.224 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.412 0.588 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.174 0.826 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.108 -4.502 -22.237 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.398 4.398 8 H 0.100 0.900 9 N -0.292 5.292 10 C 0.019 3.981 11 C -0.187 4.187 12 C -0.009 4.009 13 N -0.347 5.347 14 C 0.353 3.647 15 O -0.411 6.411 16 C -0.024 4.024 17 N -0.167 5.167 18 C -0.071 4.071 19 C -0.153 4.153 20 C -0.036 4.036 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.143 4.143 24 C -0.108 4.108 25 C -0.076 4.076 26 C 0.012 3.988 27 C -0.226 4.226 28 C -0.265 4.265 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.191 0.809 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.891 -4.018 -21.455 24.395 hybrid contribution 0.350 0.723 -0.854 1.172 sum 11.241 -3.295 -22.309 25.198 Atomic orbital electron populations 1.69836 1.05979 1.26843 1.51179 1.25494 0.95098 0.97820 0.97824 0.86945 0.80802 0.84516 0.77157 1.21106 1.22947 1.19064 1.18727 0.84826 0.94266 1.42013 0.89958 1.43647 1.06438 1.49438 1.29668 1.21042 0.97647 0.93753 0.85691 1.22404 1.02958 0.99141 0.94190 1.21595 1.01528 0.95498 0.82244 1.45998 1.63463 1.19414 1.05847 1.17754 0.78461 0.85569 0.82894 1.90581 1.46427 1.18114 1.85981 1.21433 0.96261 0.91633 0.93122 1.67290 1.11414 1.05045 1.32965 1.22220 0.98007 0.99399 0.87465 1.22150 0.98020 0.95516 0.99659 1.18208 0.97638 0.94274 0.93496 1.20920 0.99966 0.96779 0.96214 1.21084 0.97059 0.94327 0.98814 1.21137 1.00259 1.00420 0.92446 1.22223 0.93693 0.94418 1.00482 1.18712 1.00113 0.96272 0.92465 1.21148 0.94310 0.96824 0.86528 1.23055 1.00951 0.93374 1.05261 1.23373 0.98598 0.99920 1.04612 0.92593 0.92584 0.93697 0.91915 0.90288 0.91128 0.91365 0.75120 0.82110 0.83971 0.85004 0.85530 0.85353 0.80925 0.89109 0.87887 0.90505 0.90836 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.97 55.49 0.78 -26.10 16 2 C 0.04 1.09 5.33 -17.43 -0.09 1.00 16 3 Si 0.88 21.92 24.97 -169.99 -4.24 17.68 16 4 H -0.28 -6.88 6.70 56.52 0.38 -6.50 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.27 -7.23 8.97 -15.06 -0.14 -7.37 16 8 H 0.08 2.39 6.86 -52.48 -0.36 2.03 16 9 N -0.57 -13.06 2.40 -165.66 -0.40 -13.46 16 10 C 0.14 2.96 4.54 -4.04 -0.02 2.94 16 11 C -0.15 -2.53 5.65 -26.73 -0.15 -2.68 16 12 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 13 N -0.70 -10.13 5.54 -61.21 -0.34 -10.47 16 14 C 0.57 8.62 7.78 -12.28 -0.10 8.52 16 15 O -0.53 -8.97 13.44 5.33 0.07 -8.89 16 16 C 0.13 1.74 6.81 -82.55 -0.56 1.17 16 17 N -0.46 -5.67 9.52 -9.81 -0.09 -5.76 16 18 C 0.08 0.71 11.06 -18.03 -0.20 0.51 16 19 C -0.13 -1.12 9.88 -39.28 -0.39 -1.50 16 20 C -0.03 -0.32 5.75 -106.82 -0.61 -0.93 16 21 C -0.12 -0.97 9.82 -39.53 -0.39 -1.35 16 22 C -0.09 -0.72 9.95 -39.89 -0.40 -1.12 16 23 C -0.12 -1.15 9.95 -39.87 -0.40 -1.55 16 24 C -0.09 -1.07 9.23 -39.60 -0.37 -1.44 16 25 C -0.07 -0.91 5.76 -106.59 -0.61 -1.53 16 26 C 0.12 2.37 6.56 -67.93 -0.45 1.93 16 27 C -0.19 -3.55 9.80 -26.74 -0.26 -3.81 16 28 C -0.22 -4.25 10.36 -26.73 -0.28 -4.52 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.06 1.27 3.26 -51.93 -0.17 1.10 16 31 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 5.51 7.84 -40.82 -0.32 5.19 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.17 2.31 4.96 -52.49 -0.26 2.05 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.10 2.20 6.45 -51.93 -0.33 1.87 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -31.85 384.79 -10.37 -42.22 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.52 Total: 8.94 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -5.43 Total: -9.95 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.06 Total: -55.79 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.24 Total: 17.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.85 -10.37 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490382553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.945 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds