Wall clock time and date at job start Sat Apr 11 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48496 * 109.46966 * 275.33694 * 3 2 1 5 5 H 1.48499 * 109.46665 * 35.33601 * 3 2 1 6 6 H 1.48497 * 109.47351 * 155.33382 * 3 2 1 7 7 C 1.38815 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99947 * 339.49850 * 7 2 1 9 9 N 1.36933 * 120.00292 * 159.48900 * 7 2 1 10 10 C 1.46493 * 120.00194 * 321.34636 * 9 7 2 11 11 C 1.53002 * 109.46966 * 270.26789 * 10 9 7 12 12 C 1.52997 * 109.46919 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.46825 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99841 * 180.02562 * 13 12 11 15 15 O 1.21544 * 120.00186 * 359.97438 * 14 13 12 16 16 C 1.47943 * 120.00038 * 179.97438 * 14 13 12 17 17 N 1.32202 * 120.15782 * 5.58339 * 16 14 13 18 18 C 1.32032 * 122.68168 * 179.97438 * 17 16 14 19 19 C 1.36684 * 122.02912 * 0.02562 * 18 17 16 20 20 C 1.40533 * 118.84852 * 359.97438 * 19 18 17 21 21 C 1.40320 * 122.22539 * 180.02562 * 20 19 18 22 22 C 1.36196 * 119.45606 * 180.02562 * 21 20 19 23 23 C 1.39381 * 121.00466 * 0.02562 * 22 21 20 24 24 C 1.36261 * 121.07979 * 359.97438 * 23 22 21 25 25 C 1.40100 * 119.53669 * 359.74487 * 24 23 22 26 26 C 1.46507 * 119.99583 * 141.61116 * 9 7 2 27 27 C 1.52993 * 117.50007 * 2.93988 * 26 9 7 28 28 C 1.52996 * 117.50205 * 294.31540 * 26 9 7 29 29 H 0.97002 * 120.00290 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47359 * 30.26995 * 10 9 7 31 31 H 1.09003 * 109.47302 * 150.26861 * 10 9 7 32 32 H 1.08999 * 109.47250 * 300.00272 * 11 10 9 33 33 H 1.09000 * 109.46603 * 60.00145 * 11 10 9 34 34 H 1.08999 * 109.47485 * 300.00254 * 12 11 10 35 35 H 1.09000 * 109.47262 * 60.00675 * 12 11 10 36 36 H 0.96993 * 120.00313 * 0.02562 * 13 12 11 37 37 H 1.07998 * 118.98212 * 180.02562 * 18 17 16 38 38 H 1.07997 * 120.57339 * 179.97438 * 19 18 17 39 39 H 1.08008 * 120.26931 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.49781 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.46185 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.23220 * 179.97438 * 24 23 22 43 43 H 1.09005 * 115.54421 * 148.64734 * 26 9 7 44 44 H 1.08996 * 117.50201 * 0.02562 * 27 26 9 45 45 H 1.08998 * 117.49878 * 145.01462 * 27 26 9 46 46 H 1.09003 * 117.49752 * 214.97967 * 28 26 9 47 47 H 1.08998 * 117.49694 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3849 2.1115 -1.3940 5 1 1.5085 2.6174 0.8098 6 1 3.5995 1.4103 0.5843 7 6 2.0103 -1.2021 0.0005 8 1 1.5216 -2.1077 0.3285 9 7 3.3145 -1.2399 -0.4149 10 6 3.7446 -0.4243 -1.5533 11 6 3.5709 -1.2225 -2.8470 12 6 4.0195 -0.3705 -4.0360 13 7 3.8526 -1.1346 -5.2749 14 6 4.1863 -0.5817 -6.4578 15 8 4.6252 0.5511 -6.4969 16 6 4.0183 -1.3534 -7.7088 17 7 3.4398 -2.5419 -7.6834 18 6 3.2640 -3.2726 -8.7689 19 6 3.6715 -2.8478 -10.0025 20 6 4.2960 -1.5940 -10.1158 21 6 4.7414 -1.0884 -11.3466 22 6 5.3402 0.1341 -11.3913 23 6 5.5173 0.8896 -10.2334 24 6 5.0968 0.4291 -9.0219 25 6 4.4713 -0.8217 -8.9376 26 6 4.2786 -2.1004 0.2754 27 6 3.7523 -2.9838 1.4083 28 6 4.6142 -1.7611 1.7290 29 1 -0.4851 0.8400 -0.0004 30 1 3.1394 0.4810 -1.6010 31 1 4.7935 -0.1541 -1.4311 32 1 4.1761 -2.1279 -2.7994 33 1 2.5220 -1.4926 -2.9692 34 1 3.4140 0.5346 -4.0835 35 1 5.0683 -0.1000 -3.9141 36 1 3.5020 -2.0385 -5.2437 37 1 2.7834 -4.2356 -8.6793 38 1 3.5162 -3.4650 -10.8750 39 1 4.6113 -1.6643 -12.2510 40 1 5.6829 0.5241 -12.3383 41 1 5.9949 1.8561 -10.2976 42 1 5.2414 1.0257 -8.1333 43 1 5.0795 -2.5016 -0.3456 44 1 2.6889 -2.9252 1.6398 45 1 4.2069 -3.9666 1.5327 46 1 5.6359 -1.9394 2.0645 47 1 4.1181 -0.8973 2.1716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490382553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:03 Heat of formation + Delta-G solvation = 57.109809 kcal Electronic energy + Delta-G solvation = -28025.036698 eV Core-core repulsion = 24173.745393 eV Total energy + Delta-G solvation = -3851.291304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18301 -40.38726 -39.06665 -38.38991 -36.84013 -35.30890 -34.08268 -33.71450 -32.19270 -31.68125 -30.52525 -27.43176 -26.13968 -25.18891 -24.52361 -23.76256 -23.10316 -22.63206 -21.87798 -21.38651 -19.31467 -18.53516 -18.38235 -18.15908 -17.45635 -17.20519 -16.86561 -16.75782 -16.74100 -15.77008 -15.67324 -15.50052 -15.39792 -14.87341 -14.70050 -14.51031 -14.38262 -14.12599 -13.94163 -13.88430 -13.76433 -13.16849 -12.77143 -12.76243 -12.67845 -12.55204 -12.48961 -12.41002 -12.05450 -11.76678 -11.50812 -11.26255 -11.22002 -11.12517 -10.95939 -10.62618 -10.52808 -10.24523 -10.14756 -9.08735 -8.63788 -8.21303 -5.60852 -1.00544 -0.14110 0.67303 1.27676 1.38454 1.49003 1.57244 1.93006 2.18196 2.38795 2.96863 3.04193 3.07550 3.18936 3.36077 3.58601 3.67139 3.79354 3.88476 4.03214 4.08437 4.20102 4.27036 4.30225 4.34539 4.40717 4.40980 4.46851 4.49584 4.55520 4.68938 4.71442 4.76759 4.85229 4.95731 5.03563 5.04483 5.09563 5.20343 5.29145 5.33802 5.38936 5.40429 5.52526 5.55329 5.61667 5.89152 5.94900 6.20331 6.30004 6.72969 6.98861 7.03362 7.62727 8.03120 8.97661 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002301 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.859815 B =12164.088088 C =12630.694903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.017 4.017 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.313 1.313 6 H -0.256 1.256 7 C -0.246 4.246 8 H 0.048 0.952 9 N -0.587 5.587 10 C 0.138 3.862 11 C -0.128 4.128 12 C 0.125 3.875 13 N -0.696 5.696 14 C 0.565 3.435 15 O -0.559 6.559 16 C 0.089 3.911 17 N -0.467 5.467 18 C 0.053 3.947 19 C -0.105 4.105 20 C -0.054 4.054 21 C -0.108 4.108 22 C -0.100 4.100 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.087 4.087 26 C 0.106 3.894 27 C -0.187 4.187 28 C -0.215 4.215 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.191 0.809 38 H 0.187 0.813 39 H 0.171 0.829 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 -6.006 -25.529 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.214 4.214 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.242 1.242 6 H -0.180 1.180 7 C -0.376 4.376 8 H 0.066 0.934 9 N -0.307 5.307 10 C 0.013 3.987 11 C -0.168 4.168 12 C 0.001 3.999 13 N -0.346 5.346 14 C 0.351 3.649 15 O -0.438 6.438 16 C -0.061 4.061 17 N -0.179 5.179 18 C -0.094 4.094 19 C -0.124 4.124 20 C -0.059 4.059 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.091 4.091 26 C -0.001 4.001 27 C -0.225 4.225 28 C -0.256 4.256 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.255 0.745 37 H 0.208 0.792 38 H 0.204 0.796 39 H 0.188 0.812 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.146 0.854 44 H 0.086 0.914 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.658 -5.535 -24.747 28.802 hybrid contribution -0.458 1.044 0.028 1.140 sum 13.200 -4.492 -24.719 28.380 Atomic orbital electron populations 1.69957 1.07554 1.27254 1.54456 1.26042 0.95583 1.00852 0.98907 0.85985 0.79640 0.80712 0.77263 1.20236 1.24189 1.18014 1.18566 0.86576 0.92764 1.39670 0.93402 1.43759 1.05651 1.50241 1.31021 1.21133 0.98576 0.92877 0.86153 1.22118 1.01662 0.99620 0.93361 1.21362 1.01709 0.94505 0.82317 1.45892 1.63743 1.19508 1.05475 1.18132 0.77707 0.85474 0.83571 1.90570 1.47520 1.19228 1.86529 1.21119 0.99571 0.92718 0.92689 1.67207 1.11088 1.04800 1.34825 1.22800 0.98855 1.00338 0.87398 1.22648 0.94608 0.94595 1.00589 1.18601 0.98642 0.95062 0.93588 1.21404 0.97865 0.96855 0.96436 1.21482 0.96723 0.94200 0.99436 1.21454 0.98434 1.01094 0.92096 1.22059 0.96815 0.95083 1.00954 1.18905 1.00244 0.96806 0.93098 1.21528 0.94671 0.96660 0.87278 1.23036 0.99303 0.95310 1.04837 1.23356 1.00162 0.98641 1.03396 0.92942 0.95078 0.90851 0.89780 0.93031 0.93120 0.90134 0.74547 0.79206 0.79581 0.81170 0.81983 0.83621 0.83434 0.85392 0.91450 0.86867 0.87062 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.97 21.65 0.30 -59.28 16 2 C -0.02 -1.01 5.33 84.86 0.45 -0.56 16 3 Si 0.93 46.86 24.97 68.60 1.71 48.57 16 4 H -0.28 -13.27 6.70 99.48 0.67 -12.60 16 5 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.25 -13.61 8.97 84.03 0.75 -12.86 16 8 H 0.05 2.95 6.86 -2.91 -0.02 2.93 16 9 N -0.59 -26.55 2.40 -678.04 -1.63 -28.18 16 10 C 0.14 5.53 4.54 86.38 0.39 5.92 16 11 C -0.13 -4.38 5.65 30.59 0.17 -4.21 16 12 C 0.13 3.98 5.67 86.38 0.49 4.47 16 13 N -0.70 -20.92 5.54 -465.86 -2.58 -23.50 16 14 C 0.56 18.09 7.78 86.82 0.68 18.77 16 15 O -0.56 -20.11 13.44 -3.85 -0.05 -20.16 16 16 C 0.09 2.51 6.81 42.43 0.29 2.80 16 17 N -0.47 -11.56 9.52 -184.96 -1.76 -13.32 16 18 C 0.05 0.89 11.06 84.30 0.93 1.83 16 19 C -0.11 -1.39 9.88 22.47 0.22 -1.17 16 20 C -0.05 -0.97 5.75 -21.29 -0.12 -1.09 16 21 C -0.11 -1.29 9.82 22.30 0.22 -1.07 16 22 C -0.10 -1.19 9.95 22.07 0.22 -0.97 16 23 C -0.11 -1.95 9.95 22.08 0.22 -1.73 16 24 C -0.13 -3.23 9.23 22.26 0.21 -3.02 16 25 C -0.09 -2.22 5.76 -21.14 -0.12 -2.34 16 26 C 0.11 3.94 6.56 44.99 0.30 4.23 16 27 C -0.19 -6.79 9.80 30.59 0.30 -6.49 16 28 C -0.22 -7.67 10.36 30.59 0.32 -7.36 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.03 1.42 3.26 -2.39 -0.01 1.41 16 31 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.42 11.48 7.84 -92.71 -0.73 10.76 16 37 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.15 4.35 4.96 -3.00 -0.01 4.33 16 43 H 0.13 3.85 8.14 -2.38 -0.02 3.83 16 44 H 0.07 2.95 6.45 -2.39 -0.02 2.93 16 45 H 0.11 3.27 8.14 -2.39 -0.02 3.26 16 46 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -75.35 384.79 2.14 -73.22 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.23 Total: 27.48 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.91 Total: -4.83 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -5.67 Total: -124.27 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.71 Total: 48.57 kcal Total: -75.35 2.14 -73.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490382553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.329 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds