Wall clock time and date at job start Sat Apr 11 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99683 * 2 1 4 4 H 1.48502 * 109.47107 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.47081 * 30.00292 * 3 2 1 6 6 H 1.48496 * 109.47165 * 150.00394 * 3 2 1 7 7 C 1.38814 * 120.00673 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00034 * 160.27829 * 7 2 1 9 9 N 1.36933 * 119.99406 * 340.28245 * 7 2 1 10 10 C 1.46502 * 120.00339 * 320.53203 * 9 7 2 11 11 C 1.53006 * 109.47247 * 270.00603 * 10 9 7 12 12 C 1.52997 * 109.47304 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00012 * 180.02562 * 13 12 11 15 15 O 1.21558 * 120.00122 * 0.02562 * 14 13 12 16 16 C 1.47760 * 119.99903 * 180.02562 * 14 13 12 17 17 C 1.40598 * 120.26534 * 359.72035 * 16 14 13 18 18 N 1.30802 * 121.53277 * 179.70870 * 17 16 14 19 19 C 1.33825 * 121.71857 * 0.56340 * 18 17 16 20 20 C 1.40524 * 120.81138 * 179.69807 * 19 18 17 21 21 C 1.36126 * 119.81726 * 180.02562 * 20 19 18 22 22 C 1.39348 * 121.08500 * 0.02562 * 21 20 19 23 23 C 1.36143 * 120.83408 * 359.97438 * 22 21 20 24 24 C 1.40543 * 119.62289 * 0.02562 * 23 22 21 25 25 C 1.39017 * 120.26694 * 179.97438 * 16 14 13 26 26 C 1.46499 * 120.00156 * 140.53644 * 9 7 2 27 27 C 1.53000 * 117.49756 * 3.28192 * 26 9 7 28 28 C 1.52994 * 60.00104 * 252.51432 * 27 26 9 29 29 H 0.97000 * 120.00354 * 355.01578 * 1 2 3 30 30 H 1.09002 * 109.47212 * 30.00174 * 10 9 7 31 31 H 1.08998 * 109.47468 * 150.00087 * 10 9 7 32 32 H 1.09002 * 109.46664 * 299.99907 * 11 10 9 33 33 H 1.08999 * 109.46803 * 59.99513 * 11 10 9 34 34 H 1.09002 * 109.46863 * 300.00241 * 12 11 10 35 35 H 1.09001 * 109.46706 * 59.99739 * 12 11 10 36 36 H 0.97005 * 119.99658 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.23583 * 359.97438 * 17 16 14 38 38 H 1.08008 * 120.09170 * 0.06361 * 20 19 18 39 39 H 1.07999 * 119.46099 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.58059 * 180.02562 * 22 21 20 41 41 H 1.07993 * 120.19013 * 179.97438 * 23 22 21 42 42 H 1.07999 * 121.01755 * 0.02562 * 25 16 14 43 43 H 1.09001 * 115.55457 * 148.99393 * 26 9 7 44 44 H 1.09004 * 117.49643 * 0.02562 * 27 26 9 45 45 H 1.08997 * 117.49838 * 145.01935 * 27 26 9 46 46 H 1.09006 * 117.49900 * 252.51071 * 28 27 26 47 47 H 1.08996 * 117.52328 * 107.48177 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3162 9 7 1.3859 -2.3534 0.3991 10 6 0.4641 -2.3296 1.5375 11 6 1.2394 -2.6056 2.8274 12 6 0.2768 -2.5801 4.0164 13 7 1.0191 -2.8450 5.2513 14 6 0.3725 -2.8721 6.4335 15 8 -0.8267 -2.6773 6.4750 16 6 1.1212 -3.1387 7.6791 17 6 2.5073 -3.3706 7.6369 18 7 3.1953 -3.6034 8.7247 19 6 2.6144 -3.6437 9.9296 20 6 3.3710 -3.9017 11.0853 21 6 2.7592 -3.9386 12.3007 22 6 1.3876 -3.7246 12.4225 23 6 0.6208 -3.4717 11.3264 24 6 1.2190 -3.4262 10.0555 25 6 0.4599 -3.1674 8.9016 26 6 1.6397 -3.6090 -0.3117 27 6 2.6700 -3.5848 -1.4425 28 6 1.1797 -3.7017 -1.7680 29 1 -0.4850 0.8368 0.0730 30 1 -0.0097 -1.3500 1.6010 31 1 -0.3003 -3.0948 1.4022 32 1 1.7132 -3.5852 2.7639 33 1 2.0037 -1.8404 2.9626 34 1 -0.1967 -1.6004 4.0796 35 1 -0.4878 -3.3451 3.8812 36 1 1.9759 -3.0008 5.2181 37 1 3.0165 -3.3519 6.6847 38 1 4.4353 -4.0697 11.0095 39 1 3.3463 -4.1370 13.1852 40 1 0.9273 -3.7589 13.3989 41 1 -0.4413 -3.3077 11.4328 42 1 -0.6048 -2.9972 8.9626 43 1 1.5779 -4.5130 0.2941 44 1 3.1594 -2.6348 -1.6572 45 1 3.2866 -4.4730 -1.5806 46 1 0.8156 -4.6669 -2.1203 47 1 0.6879 -2.8287 -2.1970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490385731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:13 Heat of formation + Delta-G solvation = 62.324601 kcal Electronic energy + Delta-G solvation = -27523.707666 eV Core-core repulsion = 23672.642492 eV Total energy + Delta-G solvation = -3851.065174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.26434 -39.52050 -37.28900 -37.09954 -35.40585 -33.76855 -33.60646 -31.91230 -30.93651 -30.42820 -29.30609 -25.88908 -24.64112 -24.39778 -23.25467 -22.46118 -21.43722 -21.10712 -20.88418 -19.68064 -18.49315 -18.05576 -17.45748 -16.39178 -16.12071 -15.67952 -15.47506 -15.20675 -14.94010 -14.73088 -14.61514 -14.53119 -14.01608 -13.92985 -13.71066 -13.49959 -13.34949 -12.64929 -12.24258 -12.18126 -12.15667 -11.92712 -11.87589 -11.55697 -11.04916 -10.85487 -10.83232 -10.75898 -10.67969 -10.38890 -10.21926 -10.05569 -9.70819 -9.62777 -9.57902 -9.26094 -9.23534 -8.94203 -8.66159 -8.49603 -6.55024 -5.80876 -3.47994 -0.11522 0.25636 1.51388 2.26234 3.07836 3.11825 3.31994 3.40515 3.42407 3.77158 3.83249 4.18712 4.35279 4.41294 4.42820 4.46283 4.65330 4.73218 4.85337 4.94081 5.02429 5.15281 5.30723 5.37304 5.48984 5.50090 5.60609 5.65127 5.73102 5.90523 5.91692 5.97060 5.99356 6.08487 6.12131 6.26946 6.29933 6.35298 6.38416 6.50217 6.63373 6.64955 6.71158 7.03748 7.07929 7.24490 7.47053 7.51368 7.59908 7.77231 8.15680 8.47374 9.12966 9.73880 10.32666 11.13792 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.002028 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.497324 B =13806.606133 C =14158.755298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.015 3.985 3 Si 0.894 3.106 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.155 3.845 11 C -0.147 4.147 12 C 0.121 3.879 13 N -0.717 5.717 14 C 0.559 3.441 15 O -0.537 6.537 16 C -0.189 4.189 17 C 0.163 3.837 18 N -0.476 5.476 19 C 0.140 3.860 20 C -0.098 4.098 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.085 4.085 24 C -0.113 4.113 25 C 0.011 3.989 26 C 0.120 3.880 27 C -0.196 4.196 28 C -0.222 4.222 29 H 0.255 0.745 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.693 -8.930 22.510 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.267 5.267 10 C 0.028 3.972 11 C -0.188 4.188 12 C -0.003 4.003 13 N -0.368 5.368 14 C 0.344 3.656 15 O -0.416 6.416 16 C -0.195 4.195 17 C -0.011 4.011 18 N -0.183 5.183 19 C 0.019 3.981 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.016 4.016 26 C 0.011 3.989 27 C -0.234 4.234 28 C -0.263 4.263 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.234 0.766 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.613 -8.771 22.507 24.424 hybrid contribution 0.034 0.971 -0.152 0.984 sum 3.647 -7.800 22.354 23.955 Atomic orbital electron populations 1.70049 1.05513 1.26262 1.50477 1.25250 0.94999 0.98812 0.99523 0.86462 0.79576 0.83769 0.77904 1.21187 1.21422 1.20243 1.18990 0.93265 0.85017 1.41774 0.91943 1.43331 1.50930 1.03111 1.29364 1.20753 0.90522 1.02732 0.83215 1.22484 0.99271 1.01430 0.95576 1.21532 0.95181 1.01622 0.81917 1.46098 1.12241 1.71592 1.06848 1.17965 0.86984 0.77471 0.83170 1.90787 1.14253 1.49647 1.86867 1.21058 0.95670 1.07650 0.95075 1.23106 0.89829 0.90902 0.97274 1.67971 1.38755 1.13733 0.97815 1.19040 0.90159 0.96553 0.92333 1.20850 1.00486 0.99900 0.90417 1.21000 0.94915 0.97729 0.97627 1.20963 0.94036 0.99897 0.99055 1.21093 1.00333 0.97982 0.90993 1.18851 0.94370 1.03576 0.94724 1.21987 1.00782 0.88914 0.89902 1.21238 1.00593 0.90631 0.86412 1.23012 0.92190 1.01754 1.06462 1.23346 0.96810 1.00932 1.05181 0.93469 0.88676 0.95235 0.92982 0.91397 0.91136 0.91600 0.76621 0.81930 0.84429 0.85061 0.85226 0.84797 0.82840 0.89682 0.88515 0.90879 0.91330 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 11.50 55.49 0.64 -23.86 16 2 C 0.02 0.40 4.98 -17.43 -0.09 0.32 16 3 Si 0.89 20.91 29.60 -169.99 -5.03 15.88 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.74 8.47 -15.06 -0.13 -6.87 16 8 H 0.06 1.63 6.74 -52.49 -0.35 1.28 16 9 N -0.55 -12.96 2.75 -165.66 -0.46 -13.41 16 10 C 0.15 3.34 5.33 -4.04 -0.02 3.32 16 11 C -0.15 -2.54 5.65 -26.73 -0.15 -2.69 16 12 C 0.12 1.89 5.67 -4.05 -0.02 1.86 16 13 N -0.72 -9.45 5.51 -61.28 -0.34 -9.79 16 14 C 0.56 7.93 7.77 -12.37 -0.10 7.84 16 15 O -0.54 -9.45 16.38 5.31 0.09 -9.37 16 16 C -0.19 -2.25 5.89 -104.83 -0.62 -2.86 16 17 C 0.16 1.76 10.68 -17.10 -0.18 1.58 16 18 N -0.48 -5.59 10.30 -10.67 -0.11 -5.70 16 19 C 0.14 1.53 6.61 -84.78 -0.56 0.97 16 20 C -0.10 -0.84 9.97 -39.48 -0.39 -1.23 16 21 C -0.09 -0.60 9.94 -39.93 -0.40 -0.99 16 22 C -0.12 -0.76 9.96 -39.92 -0.40 -1.16 16 23 C -0.09 -0.65 9.77 -39.47 -0.39 -1.04 16 24 C -0.11 -1.15 5.74 -106.82 -0.61 -1.76 16 25 C 0.01 0.12 9.46 -38.43 -0.36 -0.25 16 26 C 0.12 2.50 6.56 -67.93 -0.45 2.06 16 27 C -0.20 -3.81 9.80 -26.73 -0.26 -4.08 16 28 C -0.22 -4.51 10.36 -26.73 -0.28 -4.79 16 29 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 30 H 0.10 2.36 5.59 -51.93 -0.29 2.07 16 31 H 0.03 0.61 8.07 -51.93 -0.42 0.20 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 4.20 6.50 -40.82 -0.27 3.94 16 37 H 0.16 1.34 6.37 -52.49 -0.33 1.01 16 38 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.15 1.54 7.70 -52.49 -0.40 1.13 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.10 2.06 6.46 -51.93 -0.34 1.72 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -31.49 393.11 -11.30 -42.79 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.61 Total: 7.31 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -5.40 Total: -9.77 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.26 Total: -52.76 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.49 -11.30 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490385731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.115 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds