Wall clock time and date at job start Sat Apr 11 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99683 * 2 1 4 4 H 1.48502 * 109.47107 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.47081 * 30.00292 * 3 2 1 6 6 H 1.48496 * 109.47165 * 150.00394 * 3 2 1 7 7 C 1.38814 * 120.00673 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00034 * 160.27829 * 7 2 1 9 9 N 1.36933 * 119.99406 * 340.28245 * 7 2 1 10 10 C 1.46502 * 120.00339 * 320.53203 * 9 7 2 11 11 C 1.53006 * 109.47247 * 270.00603 * 10 9 7 12 12 C 1.52997 * 109.47304 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00012 * 180.02562 * 13 12 11 15 15 O 1.21558 * 120.00122 * 0.02562 * 14 13 12 16 16 C 1.47760 * 119.99903 * 180.02562 * 14 13 12 17 17 C 1.40598 * 120.26534 * 359.72035 * 16 14 13 18 18 N 1.30802 * 121.53277 * 179.70870 * 17 16 14 19 19 C 1.33825 * 121.71857 * 0.56340 * 18 17 16 20 20 C 1.40524 * 120.81138 * 179.69807 * 19 18 17 21 21 C 1.36126 * 119.81726 * 180.02562 * 20 19 18 22 22 C 1.39348 * 121.08500 * 0.02562 * 21 20 19 23 23 C 1.36143 * 120.83408 * 359.97438 * 22 21 20 24 24 C 1.40543 * 119.62289 * 0.02562 * 23 22 21 25 25 C 1.39017 * 120.26694 * 179.97438 * 16 14 13 26 26 C 1.46499 * 120.00156 * 140.53644 * 9 7 2 27 27 C 1.53000 * 117.49756 * 3.28192 * 26 9 7 28 28 C 1.52994 * 60.00104 * 252.51432 * 27 26 9 29 29 H 0.97000 * 120.00354 * 355.01578 * 1 2 3 30 30 H 1.09002 * 109.47212 * 30.00174 * 10 9 7 31 31 H 1.08998 * 109.47468 * 150.00087 * 10 9 7 32 32 H 1.09002 * 109.46664 * 299.99907 * 11 10 9 33 33 H 1.08999 * 109.46803 * 59.99513 * 11 10 9 34 34 H 1.09002 * 109.46863 * 300.00241 * 12 11 10 35 35 H 1.09001 * 109.46706 * 59.99739 * 12 11 10 36 36 H 0.97005 * 119.99658 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.23583 * 359.97438 * 17 16 14 38 38 H 1.08008 * 120.09170 * 0.06361 * 20 19 18 39 39 H 1.07999 * 119.46099 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.58059 * 180.02562 * 22 21 20 41 41 H 1.07993 * 120.19013 * 179.97438 * 23 22 21 42 42 H 1.07999 * 121.01755 * 0.02562 * 25 16 14 43 43 H 1.09001 * 115.55457 * 148.99393 * 26 9 7 44 44 H 1.09004 * 117.49643 * 0.02562 * 27 26 9 45 45 H 1.08997 * 117.49838 * 145.01935 * 27 26 9 46 46 H 1.09006 * 117.49900 * 252.51071 * 28 27 26 47 47 H 1.08996 * 117.52328 * 107.48177 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0428 -1.2293 -0.3162 9 7 1.3859 -2.3534 0.3991 10 6 0.4641 -2.3296 1.5375 11 6 1.2394 -2.6056 2.8274 12 6 0.2768 -2.5801 4.0164 13 7 1.0191 -2.8450 5.2513 14 6 0.3725 -2.8721 6.4335 15 8 -0.8267 -2.6773 6.4750 16 6 1.1212 -3.1387 7.6791 17 6 2.5073 -3.3706 7.6369 18 7 3.1953 -3.6034 8.7247 19 6 2.6144 -3.6437 9.9296 20 6 3.3710 -3.9017 11.0853 21 6 2.7592 -3.9386 12.3007 22 6 1.3876 -3.7246 12.4225 23 6 0.6208 -3.4717 11.3264 24 6 1.2190 -3.4262 10.0555 25 6 0.4599 -3.1674 8.9016 26 6 1.6397 -3.6090 -0.3117 27 6 2.6700 -3.5848 -1.4425 28 6 1.1797 -3.7017 -1.7680 29 1 -0.4850 0.8368 0.0730 30 1 -0.0097 -1.3500 1.6010 31 1 -0.3003 -3.0948 1.4022 32 1 1.7132 -3.5852 2.7639 33 1 2.0037 -1.8404 2.9626 34 1 -0.1967 -1.6004 4.0796 35 1 -0.4878 -3.3451 3.8812 36 1 1.9759 -3.0008 5.2181 37 1 3.0165 -3.3519 6.6847 38 1 4.4353 -4.0697 11.0095 39 1 3.3463 -4.1370 13.1852 40 1 0.9273 -3.7589 13.3989 41 1 -0.4413 -3.3077 11.4328 42 1 -0.6048 -2.9972 8.9626 43 1 1.5779 -4.5130 0.2941 44 1 3.1594 -2.6348 -1.6572 45 1 3.2866 -4.4730 -1.5806 46 1 0.8156 -4.6669 -2.1203 47 1 0.6879 -2.8287 -2.1970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490385731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:11 Heat of formation + Delta-G solvation = 44.626931 kcal Electronic energy + Delta-G solvation = -27524.475095 eV Core-core repulsion = 23672.642492 eV Total energy + Delta-G solvation = -3851.832602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.04146 -40.58364 -38.83183 -37.94948 -36.74817 -35.27117 -34.53546 -33.47229 -32.02262 -31.09983 -30.77200 -27.37708 -25.97059 -25.14271 -24.62320 -23.13356 -23.02497 -22.49558 -22.04007 -21.42177 -19.34345 -18.88652 -18.37526 -18.08174 -17.26746 -16.92656 -16.73262 -16.60360 -16.27177 -15.83404 -15.57182 -15.45530 -15.30379 -14.90147 -14.84769 -14.46646 -14.38463 -14.11647 -13.89884 -13.63309 -13.23697 -12.83099 -12.75898 -12.74829 -12.57770 -12.46318 -12.44645 -12.27253 -12.03212 -11.86800 -11.63839 -11.45305 -11.34364 -11.25565 -10.87045 -10.58380 -10.46957 -10.23759 -9.85236 -9.32594 -8.47586 -7.77006 -5.49166 -0.85625 -0.45661 0.80957 1.43566 1.47162 1.47427 1.55493 2.01267 2.18351 2.49638 3.03175 3.11835 3.17599 3.42867 3.49071 3.52637 3.56666 3.67903 3.76311 3.93765 4.18847 4.19819 4.24953 4.33639 4.34919 4.41415 4.48551 4.57330 4.62157 4.67901 4.77859 4.78263 4.92172 4.94328 4.97127 5.03350 5.09570 5.13483 5.31793 5.36118 5.38980 5.39776 5.44714 5.49569 5.57955 5.69909 5.82414 5.84731 6.41969 6.48698 6.71691 7.06564 7.18196 7.86664 8.38668 9.11821 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.002028 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.497324 B =13806.606133 C =14158.755298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.034 4.034 3 Si 0.949 3.051 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.257 4.257 8 H 0.059 0.941 9 N -0.567 5.567 10 C 0.154 3.846 11 C -0.124 4.124 12 C 0.133 3.867 13 N -0.707 5.707 14 C 0.562 3.438 15 O -0.578 6.578 16 C -0.206 4.206 17 C 0.160 3.840 18 N -0.493 5.493 19 C 0.118 3.882 20 C -0.119 4.119 21 C -0.077 4.077 22 C -0.114 4.114 23 C -0.094 4.094 24 C -0.128 4.128 25 C 0.011 3.989 26 C 0.103 3.897 27 C -0.180 4.180 28 C -0.223 4.223 29 H 0.250 0.750 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.413 0.587 37 H 0.183 0.817 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -10.593 25.016 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.232 4.232 3 Si 0.778 3.222 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.388 4.388 8 H 0.077 0.923 9 N -0.285 5.285 10 C 0.027 3.973 11 C -0.164 4.164 12 C 0.009 3.991 13 N -0.358 5.358 14 C 0.349 3.651 15 O -0.459 6.459 16 C -0.211 4.211 17 C -0.014 4.014 18 N -0.201 5.201 19 C -0.002 4.002 20 C -0.137 4.137 21 C -0.097 4.097 22 C -0.132 4.132 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.016 4.016 26 C -0.005 4.005 27 C -0.218 4.218 28 C -0.264 4.264 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.199 0.801 38 H 0.163 0.837 39 H 0.183 0.817 40 H 0.181 0.819 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.133 0.867 44 H 0.092 0.908 45 H 0.129 0.871 46 H 0.118 0.882 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.247 -10.457 25.019 27.620 hybrid contribution -0.453 1.399 -0.801 1.674 sum 4.794 -9.059 24.218 26.298 Atomic orbital electron populations 1.70177 1.06730 1.26353 1.52468 1.25878 0.95576 1.01449 1.00277 0.85584 0.78695 0.80475 0.77496 1.21441 1.21975 1.19258 1.19154 0.93144 0.86082 1.40378 0.92341 1.43540 1.50966 1.03539 1.30447 1.20663 0.90881 1.00926 0.84803 1.22122 0.98416 1.02035 0.93827 1.21201 0.94881 1.00539 0.82463 1.45884 1.12872 1.71184 1.05893 1.18273 0.86553 0.76376 0.83854 1.90760 1.16023 1.51648 1.87456 1.20844 0.96112 1.10022 0.94121 1.23326 0.89385 0.90666 0.98009 1.67997 1.39182 1.14518 0.98398 1.19471 0.90922 0.97007 0.92814 1.21079 1.01022 1.01086 0.90556 1.21454 0.95357 0.94987 0.97900 1.21417 0.93937 0.97783 1.00055 1.21406 1.01631 0.97872 0.90326 1.19037 0.94248 1.04209 0.95512 1.22151 1.01070 0.88179 0.90150 1.21576 1.01618 0.90450 0.86862 1.23015 0.91812 1.02266 1.04751 1.23262 0.97587 1.00803 1.04763 0.94108 0.92169 0.95019 0.90859 0.92508 0.93278 0.91600 0.74896 0.80058 0.83701 0.81731 0.81870 0.82871 0.82561 0.86725 0.90816 0.87063 0.88207 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.69 11.50 21.65 0.25 -52.44 16 2 C -0.03 -1.84 4.98 84.86 0.42 -1.42 16 3 Si 0.95 43.92 29.60 68.60 2.03 45.95 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.26 -13.45 8.47 84.03 0.71 -12.74 16 8 H 0.06 3.07 6.74 -2.91 -0.02 3.05 16 9 N -0.57 -26.76 2.75 -678.03 -1.86 -28.63 16 10 C 0.15 6.74 5.33 86.38 0.46 7.20 16 11 C -0.12 -4.23 5.65 30.60 0.17 -4.05 16 12 C 0.13 4.22 5.67 86.38 0.49 4.71 16 13 N -0.71 -18.53 5.51 -466.07 -2.57 -21.10 16 14 C 0.56 16.23 7.77 86.76 0.67 16.90 16 15 O -0.58 -20.96 16.38 -3.90 -0.06 -21.03 16 16 C -0.21 -4.93 5.89 -20.00 -0.12 -5.05 16 17 C 0.16 3.43 10.68 85.42 0.91 4.34 16 18 N -0.49 -11.43 10.30 -187.68 -1.93 -13.36 16 19 C 0.12 2.49 6.61 40.27 0.27 2.76 16 20 C -0.12 -1.82 9.97 22.34 0.22 -1.60 16 21 C -0.08 -0.73 9.94 22.05 0.22 -0.51 16 22 C -0.11 -1.02 9.96 22.05 0.22 -0.80 16 23 C -0.09 -1.22 9.77 22.34 0.22 -1.00 16 24 C -0.13 -2.50 5.74 -21.29 -0.12 -2.62 16 25 C 0.01 0.24 9.46 23.01 0.22 0.46 16 26 C 0.10 4.13 6.56 44.99 0.30 4.43 16 27 C -0.18 -6.67 9.80 30.59 0.30 -6.37 16 28 C -0.22 -8.85 10.36 30.59 0.32 -8.53 16 29 H 0.25 14.06 8.32 -92.71 -0.77 13.29 16 30 H 0.06 3.11 5.59 -2.39 -0.01 3.10 16 31 H 0.03 1.34 8.07 -2.39 -0.02 1.32 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 8.33 6.50 -92.70 -0.60 7.73 16 37 H 0.18 2.86 6.37 -2.91 -0.02 2.85 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 40 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.16 3.19 7.70 -2.91 -0.02 3.17 16 43 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 44 H 0.07 3.08 6.46 -2.39 -0.02 3.07 16 45 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 47 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -70.91 393.11 2.12 -68.78 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.39 Total: 25.72 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.88 Total: -3.91 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -6.11 Total: -115.52 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.91 2.12 -68.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490385731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.411 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds