Wall clock time and date at job start Sat Apr 11 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47242 * 269.99768 * 3 2 1 5 5 H 1.48504 * 109.47177 * 29.99382 * 3 2 1 6 6 H 1.48498 * 109.47496 * 149.99409 * 3 2 1 7 7 C 1.38811 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00625 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00438 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47419 * 185.00910 * 10 9 7 12 12 H 1.09001 * 109.99942 * 306.33612 * 11 10 9 13 13 C 1.54318 * 109.76817 * 67.48874 * 11 10 9 14 14 C 1.55152 * 102.86208 * 141.89017 * 13 11 10 15 15 C 1.54909 * 101.58172 * 324.29702 * 14 13 11 16 16 N 1.47017 * 109.88697 * 185.23342 * 11 10 9 17 17 C 1.34773 * 125.64460 * 61.67988 * 16 11 10 18 18 O 1.21287 * 120.00374 * 354.79691 * 17 16 11 19 19 C 1.50696 * 120.00151 * 174.79032 * 17 16 11 20 20 C 1.50706 * 109.47559 * 179.97438 * 19 17 16 21 21 C 1.39351 * 119.46991 * 269.98300 * 20 19 17 22 22 C 1.36141 * 120.87412 * 179.97438 * 21 20 19 23 23 C 1.40437 * 119.60810 * 0.02562 * 22 21 20 24 24 C 1.40767 * 121.37847 * 179.97438 * 23 22 21 25 25 C 1.36586 * 118.14846 * 180.02562 * 24 23 22 26 26 C 1.39330 * 119.93340 * 359.97438 * 25 24 23 27 27 N 1.31083 * 121.75068 * 359.97438 * 26 25 24 28 28 C 1.33676 * 121.31822 * 0.06334 * 27 26 25 29 29 C 1.36077 * 119.46082 * 90.00214 * 20 19 17 30 30 H 0.96997 * 120.00039 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99491 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46796 * 65.01393 * 10 9 7 33 33 H 1.08998 * 109.47261 * 305.01553 * 10 9 7 34 34 H 1.08995 * 110.92918 * 23.47050 * 13 11 10 35 35 H 1.09000 * 110.74175 * 260.21526 * 13 11 10 36 36 H 1.09000 * 111.00223 * 206.22791 * 14 13 11 37 37 H 1.08993 * 111.04353 * 82.38836 * 14 13 11 38 38 H 1.08997 * 110.36904 * 278.17621 * 15 14 13 39 39 H 1.08995 * 110.36830 * 155.84703 * 15 14 13 40 40 H 1.09008 * 109.46697 * 60.00900 * 19 17 16 41 41 H 1.09000 * 109.47610 * 300.00417 * 19 17 16 42 42 H 1.08007 * 119.56406 * 359.97438 * 21 20 19 43 43 H 1.07995 * 120.19678 * 179.97438 * 22 21 20 44 44 H 1.07993 * 120.92714 * 359.97438 * 24 23 22 45 45 H 1.07998 * 120.02937 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.11906 * 180.02562 * 26 25 24 47 47 H 1.07991 * 120.13094 * 359.72519 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6117 -2.1940 0.1277 12 1 5.9281 -1.4940 -0.6457 13 6 5.9190 -1.6122 1.5235 14 6 7.2734 -2.2774 1.8845 15 6 7.1067 -3.6832 1.2555 16 7 6.3644 -3.4507 0.0031 17 6 6.3782 -4.2541 -1.0789 18 8 5.6584 -4.0106 -2.0242 19 6 7.2879 -5.4549 -1.1143 20 6 7.1123 -6.1799 -2.4237 21 6 6.1562 -7.1886 -2.5260 22 6 5.9731 -7.8617 -3.6951 23 6 6.7579 -7.5364 -4.8133 24 6 6.6003 -8.2086 -6.0400 25 6 7.3992 -7.8391 -7.0845 26 6 8.3366 -6.8220 -6.9169 27 7 8.4799 -6.1975 -5.7734 28 6 7.7304 -6.5110 -4.7118 29 6 7.8902 -5.8393 -3.4870 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.9183 -3.0023 -0.9307 33 1 3.7829 -3.0805 0.8424 34 1 5.1480 -1.8932 2.2408 35 1 6.0225 -0.5281 1.4756 36 1 7.3995 -2.3454 2.9650 37 1 8.1062 -1.7418 1.4289 38 1 6.5355 -4.3311 1.9203 39 1 8.0817 -4.1216 1.0426 40 1 7.0371 -6.1251 -0.2919 41 1 8.3234 -5.1294 -1.0149 42 1 5.5524 -7.4397 -1.6663 43 1 5.2292 -8.6417 -3.7620 44 1 5.8688 -8.9950 -6.1520 45 1 7.3043 -8.3349 -8.0392 46 1 8.9612 -6.5402 -7.7518 47 1 8.6236 -5.0524 -3.3920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495561279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:36 Heat of formation + Delta-G solvation = 39.260586 kcal Electronic energy + Delta-G solvation = -28423.824588 eV Core-core repulsion = 24571.759283 eV Total energy + Delta-G solvation = -3852.065305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.06164 -40.12418 -38.03062 -36.93110 -34.68224 -33.85023 -32.46529 -31.53560 -31.38271 -30.31095 -29.27398 -27.87179 -25.27749 -24.33104 -23.60639 -22.59215 -22.21330 -21.85947 -20.70685 -19.10475 -18.04926 -17.58689 -17.20021 -17.11876 -16.86264 -16.32018 -15.22306 -14.74825 -14.65896 -14.58147 -14.45949 -14.32691 -13.98349 -13.91598 -13.61285 -13.25811 -13.19873 -12.96685 -12.90532 -12.68962 -12.36878 -12.21908 -11.78121 -11.74144 -11.59747 -11.55754 -11.26718 -11.14084 -10.89868 -10.73370 -10.65568 -10.49866 -10.12694 -9.72681 -9.69191 -9.54223 -8.86016 -8.81204 -8.51804 -8.40653 -7.16331 -5.71264 -3.06303 0.21397 0.61434 1.81950 2.63846 2.71832 3.08151 3.39352 3.43913 3.48300 3.92208 4.03819 4.35208 4.42231 4.47908 4.51632 4.58909 4.63736 4.66173 4.76050 4.84843 4.90408 4.99102 5.04702 5.17705 5.23435 5.27697 5.31007 5.35629 5.47002 5.57649 5.59667 5.65428 5.72046 5.75657 5.77369 5.82976 5.89285 5.95795 6.03008 6.16308 6.28197 6.29642 6.34671 6.42193 6.65125 6.73804 6.97146 7.60602 7.72005 8.04770 8.28313 8.47375 9.26389 9.98532 10.18652 11.47448 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.002622 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.474601 B =10674.979367 C =11862.462789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.150 3.850 11 C 0.128 3.872 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.525 3.475 18 O -0.516 6.516 19 C -0.100 4.100 20 C -0.043 4.043 21 C -0.095 4.095 22 C -0.097 4.097 23 C -0.102 4.102 24 C -0.056 4.056 25 C -0.180 4.180 26 C 0.127 3.873 27 N -0.474 5.474 28 C 0.129 3.871 29 C -0.079 4.079 30 H 0.259 0.741 31 H 0.359 0.641 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.158 0.842 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.427 -18.253 -3.890 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.022 3.978 11 C 0.025 3.975 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.173 4.173 15 C -0.024 4.024 16 N -0.350 5.350 17 C 0.313 3.687 18 O -0.390 6.390 19 C -0.140 4.140 20 C -0.045 4.045 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.104 4.104 24 C -0.083 4.083 25 C -0.200 4.200 26 C -0.046 4.046 27 N -0.181 5.181 28 C 0.008 3.992 29 C -0.098 4.098 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.175 0.825 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 22.401 -17.569 -4.282 28.789 hybrid contribution -0.193 0.620 -0.120 0.660 sum 22.208 -16.950 -4.401 28.282 Atomic orbital electron populations 1.69701 1.05075 1.25719 1.57939 1.24654 0.95242 0.97133 1.02251 0.86535 0.79117 0.84999 0.77811 1.21098 1.21760 1.20356 1.19038 0.80476 0.94729 1.42525 0.89320 1.42558 1.04022 1.01909 1.91333 1.20959 0.87557 0.89597 0.99696 1.21836 0.93458 0.84746 0.97503 0.90838 1.22703 0.96803 1.00717 0.96003 1.22793 0.98324 0.95088 1.01047 1.22344 0.96119 0.98132 0.85802 1.48511 1.47821 1.24087 1.14574 1.20063 0.83570 0.83491 0.81601 1.90806 1.41017 1.72099 1.35121 1.20730 1.00999 0.95670 0.96578 1.19037 0.95436 0.95506 0.94530 1.20797 0.96919 0.95167 0.98435 1.20923 0.98644 1.00089 0.91916 1.18854 0.98257 0.97991 0.95297 1.21484 0.97388 0.97666 0.91715 1.21866 0.98065 0.99851 1.00228 1.22941 0.95301 0.91439 0.94929 1.68018 1.24267 1.26380 0.99473 1.18790 0.92987 0.94165 0.93228 1.20565 1.00112 0.98896 0.90237 0.93116 0.80817 0.93953 0.95403 0.89645 0.90187 0.89894 0.90795 0.91109 0.90744 0.87708 0.87796 0.85376 0.85073 0.84440 0.84622 0.82523 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.29 13.97 55.49 0.78 -29.51 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.71 27.74 -169.99 -4.71 17.99 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -7.06 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.84 8.06 -52.48 -0.42 2.41 16 9 N -0.75 -18.86 5.22 -59.91 -0.31 -19.17 16 10 C 0.15 3.19 5.66 -4.04 -0.02 3.17 16 11 C 0.13 2.10 2.95 -66.96 -0.20 1.91 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.12 -1.66 6.23 -24.90 -0.16 -1.82 16 14 C -0.13 -1.23 7.08 -24.59 -0.17 -1.41 16 15 C 0.10 0.90 6.74 -2.53 -0.02 0.88 16 16 N -0.61 -8.31 3.07 -163.03 -0.50 -8.81 16 17 C 0.53 7.65 7.66 -10.99 -0.08 7.56 16 18 O -0.52 -10.16 14.82 5.55 0.08 -10.08 16 19 C -0.10 -0.97 4.73 -29.03 -0.14 -1.11 16 20 C -0.04 -0.50 4.34 -104.98 -0.46 -0.95 16 21 C -0.10 -1.04 9.59 -39.92 -0.38 -1.43 16 22 C -0.10 -1.02 9.78 -39.51 -0.39 -1.40 16 23 C -0.10 -1.19 5.74 -106.80 -0.61 -1.80 16 24 C -0.06 -0.51 9.90 -39.22 -0.39 -0.90 16 25 C -0.18 -1.46 10.03 -39.77 -0.40 -1.86 16 26 C 0.13 1.22 11.15 -17.47 -0.19 1.03 16 27 N -0.47 -6.13 10.34 -10.97 -0.11 -6.24 16 28 C 0.13 1.72 6.60 -84.86 -0.56 1.16 16 29 C -0.08 -1.01 9.58 -39.47 -0.38 -1.39 16 30 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 31 H 0.36 8.66 5.48 -40.82 -0.22 8.43 16 32 H 0.04 1.03 6.55 -51.92 -0.34 0.69 16 33 H 0.03 0.60 8.01 -51.93 -0.42 0.18 16 34 H 0.08 1.23 7.77 -51.93 -0.40 0.83 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.47 7.47 -51.93 -0.39 0.08 16 40 H 0.10 0.75 8.08 -51.92 -0.42 0.33 16 41 H 0.10 0.76 7.88 -51.93 -0.41 0.35 16 42 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 46 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -38.46 386.26 -10.60 -49.06 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.84 Total: 6.53 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -4.80 Total: -5.60 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.15 Total: -63.73 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.46 -10.60 -49.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495561279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.325 kcal (2) G-P(sol) polarization free energy of solvation -38.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds