Wall clock time and date at job start Sat Apr 11 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47242 * 269.99768 * 3 2 1 5 5 H 1.48504 * 109.47177 * 29.99382 * 3 2 1 6 6 H 1.48498 * 109.47496 * 149.99409 * 3 2 1 7 7 C 1.38811 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99965 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00625 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00438 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47419 * 185.00910 * 10 9 7 12 12 H 1.09001 * 109.99942 * 306.33612 * 11 10 9 13 13 C 1.54318 * 109.76817 * 67.48874 * 11 10 9 14 14 C 1.55152 * 102.86208 * 141.89017 * 13 11 10 15 15 C 1.54909 * 101.58172 * 324.29702 * 14 13 11 16 16 N 1.47017 * 109.88697 * 185.23342 * 11 10 9 17 17 C 1.34773 * 125.64460 * 61.67988 * 16 11 10 18 18 O 1.21287 * 120.00374 * 354.79691 * 17 16 11 19 19 C 1.50696 * 120.00151 * 174.79032 * 17 16 11 20 20 C 1.50706 * 109.47559 * 179.97438 * 19 17 16 21 21 C 1.39351 * 119.46991 * 269.98300 * 20 19 17 22 22 C 1.36141 * 120.87412 * 179.97438 * 21 20 19 23 23 C 1.40437 * 119.60810 * 0.02562 * 22 21 20 24 24 C 1.40767 * 121.37847 * 179.97438 * 23 22 21 25 25 C 1.36586 * 118.14846 * 180.02562 * 24 23 22 26 26 C 1.39330 * 119.93340 * 359.97438 * 25 24 23 27 27 N 1.31083 * 121.75068 * 359.97438 * 26 25 24 28 28 C 1.33676 * 121.31822 * 0.06334 * 27 26 25 29 29 C 1.36077 * 119.46082 * 90.00214 * 20 19 17 30 30 H 0.96997 * 120.00039 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99491 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46796 * 65.01393 * 10 9 7 33 33 H 1.08998 * 109.47261 * 305.01553 * 10 9 7 34 34 H 1.08995 * 110.92918 * 23.47050 * 13 11 10 35 35 H 1.09000 * 110.74175 * 260.21526 * 13 11 10 36 36 H 1.09000 * 111.00223 * 206.22791 * 14 13 11 37 37 H 1.08993 * 111.04353 * 82.38836 * 14 13 11 38 38 H 1.08997 * 110.36904 * 278.17621 * 15 14 13 39 39 H 1.08995 * 110.36830 * 155.84703 * 15 14 13 40 40 H 1.09008 * 109.46697 * 60.00900 * 19 17 16 41 41 H 1.09000 * 109.47610 * 300.00417 * 19 17 16 42 42 H 1.08007 * 119.56406 * 359.97438 * 21 20 19 43 43 H 1.07995 * 120.19678 * 179.97438 * 22 21 20 44 44 H 1.07993 * 120.92714 * 359.97438 * 24 23 22 45 45 H 1.07998 * 120.02937 * 179.97438 * 25 24 23 46 46 H 1.08007 * 119.11906 * 180.02562 * 26 25 24 47 47 H 1.07991 * 120.13094 * 359.72519 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6117 -2.1940 0.1277 12 1 5.9281 -1.4940 -0.6457 13 6 5.9190 -1.6122 1.5235 14 6 7.2734 -2.2774 1.8845 15 6 7.1067 -3.6832 1.2555 16 7 6.3644 -3.4507 0.0031 17 6 6.3782 -4.2541 -1.0789 18 8 5.6584 -4.0106 -2.0242 19 6 7.2879 -5.4549 -1.1143 20 6 7.1123 -6.1799 -2.4237 21 6 6.1562 -7.1886 -2.5260 22 6 5.9731 -7.8617 -3.6951 23 6 6.7579 -7.5364 -4.8133 24 6 6.6003 -8.2086 -6.0400 25 6 7.3992 -7.8391 -7.0845 26 6 8.3366 -6.8220 -6.9169 27 7 8.4799 -6.1975 -5.7734 28 6 7.7304 -6.5110 -4.7118 29 6 7.8902 -5.8393 -3.4870 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 3.9183 -3.0023 -0.9307 33 1 3.7829 -3.0805 0.8424 34 1 5.1480 -1.8932 2.2408 35 1 6.0225 -0.5281 1.4756 36 1 7.3995 -2.3454 2.9650 37 1 8.1062 -1.7418 1.4289 38 1 6.5355 -4.3311 1.9203 39 1 8.0817 -4.1216 1.0426 40 1 7.0371 -6.1251 -0.2919 41 1 8.3234 -5.1294 -1.0149 42 1 5.5524 -7.4397 -1.6663 43 1 5.2292 -8.6417 -3.7620 44 1 5.8688 -8.9950 -6.1520 45 1 7.3043 -8.3349 -8.0392 46 1 8.9612 -6.5402 -7.7518 47 1 8.6236 -5.0524 -3.3920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495561279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:35 Heat of formation + Delta-G solvation = 13.083082 kcal Electronic energy + Delta-G solvation = -28424.959729 eV Core-core repulsion = 24571.759283 eV Total energy + Delta-G solvation = -3853.200446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.86672 -41.18909 -39.02684 -37.92064 -36.59312 -34.64644 -33.83105 -33.16470 -32.34011 -31.09977 -30.75512 -28.74076 -26.82877 -25.16892 -24.72019 -23.85308 -23.28003 -23.00116 -21.83545 -20.47999 -19.44702 -18.80179 -18.14723 -17.94787 -17.82411 -17.40421 -16.50484 -16.25719 -15.84405 -15.45727 -15.41701 -15.38898 -15.19908 -15.11175 -14.85958 -14.79819 -14.17968 -13.98985 -13.91531 -13.79159 -13.70023 -13.26880 -13.05678 -12.96823 -12.79953 -12.59819 -12.45929 -12.31525 -12.15821 -12.04081 -11.90972 -11.82842 -11.59032 -11.50563 -11.09255 -10.83449 -10.46977 -9.67405 -9.64815 -9.37101 -9.21464 -8.08056 -5.43268 -0.54439 -0.17149 1.02636 1.32461 1.38920 1.45513 1.63240 1.78203 2.14382 2.44150 3.11126 3.22490 3.29565 3.50952 3.59185 3.62774 3.68397 3.75279 3.89617 3.95073 3.98999 4.02807 4.09153 4.19302 4.29087 4.29948 4.31728 4.51954 4.53728 4.56670 4.60037 4.75483 4.84192 4.86935 4.93671 5.01110 5.03490 5.05636 5.11178 5.13413 5.16195 5.36409 5.38752 5.44062 5.48566 5.61286 5.67289 5.89974 6.14662 6.57398 6.94990 7.00062 7.19346 7.73641 7.96602 9.13723 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.002622 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.474601 B =10674.979367 C =11862.462789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.240 4.240 8 H 0.047 0.953 9 N -0.750 5.750 10 C 0.155 3.845 11 C 0.133 3.867 12 H 0.056 0.944 13 C -0.124 4.124 14 C -0.120 4.120 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.518 3.482 18 O -0.581 6.581 19 C -0.087 4.087 20 C -0.050 4.050 21 C -0.115 4.115 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.062 4.062 25 C -0.176 4.176 26 C 0.120 3.880 27 N -0.513 5.513 28 C 0.099 3.901 29 C -0.104 4.104 30 H 0.260 0.740 31 H 0.367 0.633 32 H 0.006 0.994 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.157 0.843 44 H 0.168 0.832 45 H 0.174 0.826 46 H 0.186 0.814 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.427 -18.926 -3.065 31.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.785 3.215 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.371 4.371 8 H 0.065 0.935 9 N -0.396 5.396 10 C 0.028 3.972 11 C 0.028 3.972 12 H 0.074 0.926 13 C -0.162 4.162 14 C -0.158 4.158 15 C -0.029 4.029 16 N -0.347 5.347 17 C 0.308 3.692 18 O -0.460 6.460 19 C -0.126 4.126 20 C -0.052 4.052 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.087 4.087 25 C -0.195 4.195 26 C -0.052 4.052 27 N -0.221 5.221 28 C -0.022 4.022 29 C -0.122 4.122 30 H 0.069 0.931 31 H 0.201 0.799 32 H 0.024 0.976 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.175 0.825 44 H 0.186 0.814 45 H 0.191 0.809 46 H 0.203 0.797 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 25.471 -18.277 -3.405 31.535 hybrid contribution -1.206 0.701 -0.501 1.482 sum 24.265 -17.576 -3.906 30.216 Atomic orbital electron populations 1.69893 1.07226 1.26952 1.59282 1.25570 0.96250 1.01502 1.02091 0.85353 0.79065 0.78996 0.78075 1.20963 1.21394 1.16646 1.18958 0.82544 0.93405 1.42167 0.93471 1.42468 1.02494 1.03646 1.91028 1.20953 0.91127 0.87678 0.97490 1.21599 0.90020 0.86321 0.99260 0.92574 1.22663 0.99277 1.00968 0.93326 1.22814 0.95723 0.94275 1.02953 1.22737 0.97646 0.98753 0.83727 1.48649 1.47304 1.22772 1.16002 1.20976 0.83188 0.84291 0.80728 1.90780 1.43793 1.73851 1.37550 1.20780 1.01303 0.93759 0.96762 1.19277 0.95187 0.95658 0.95084 1.21101 0.97263 0.95499 0.99391 1.21293 0.98619 1.00309 0.91487 1.19184 0.98372 0.98273 0.96884 1.21917 0.97988 0.97944 0.90875 1.22280 0.96716 0.98990 1.01530 1.23591 0.95663 0.91204 0.94722 1.68016 1.25523 1.28055 1.00549 1.19102 0.94079 0.95272 0.93698 1.20705 1.01086 0.99485 0.90963 0.93097 0.79926 0.97599 0.95755 0.90858 0.90083 0.87054 0.89554 0.89842 0.86760 0.84379 0.84737 0.83885 0.82516 0.81418 0.80868 0.79741 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.63 13.97 21.65 0.30 -65.33 16 2 C -0.06 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.96 47.04 27.74 68.60 1.90 48.95 16 4 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.24 -10.40 6.52 99.48 0.65 -9.76 16 7 C -0.24 -14.81 10.47 84.03 0.88 -13.93 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 9 N -0.75 -38.45 5.22 -343.45 -1.79 -40.24 16 10 C 0.15 6.87 5.66 86.38 0.49 7.36 16 11 C 0.13 4.33 2.95 45.34 0.13 4.47 16 12 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 13 C -0.12 -3.07 6.23 31.78 0.20 -2.88 16 14 C -0.12 -1.70 7.08 31.98 0.23 -1.47 16 15 C 0.09 1.31 6.74 86.86 0.59 1.89 16 16 N -0.61 -15.78 3.07 -788.09 -2.42 -18.20 16 17 C 0.52 14.98 7.66 87.66 0.67 15.66 16 18 O -0.58 -24.09 14.82 -3.05 -0.05 -24.13 16 19 C -0.09 -1.54 4.73 29.10 0.14 -1.41 16 20 C -0.05 -1.16 4.34 -20.10 -0.09 -1.25 16 21 C -0.11 -2.51 9.59 22.05 0.21 -2.29 16 22 C -0.10 -2.04 9.78 22.32 0.22 -1.82 16 23 C -0.13 -2.91 5.74 -21.28 -0.12 -3.04 16 24 C -0.06 -1.02 9.90 22.50 0.22 -0.80 16 25 C -0.18 -2.51 10.03 22.15 0.22 -2.29 16 26 C 0.12 2.23 11.15 85.07 0.95 3.18 16 27 N -0.51 -13.63 10.34 -188.63 -1.95 -15.58 16 28 C 0.10 2.73 6.60 40.29 0.27 2.99 16 29 C -0.10 -2.75 9.58 22.34 0.21 -2.54 16 30 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 31 H 0.37 17.52 5.48 -92.71 -0.51 17.02 16 32 H 0.01 0.31 6.55 -2.38 -0.02 0.29 16 33 H 0.02 1.09 8.01 -2.39 -0.02 1.07 16 34 H 0.07 2.00 7.77 -2.39 -0.02 1.98 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 0.80 7.47 -2.39 -0.02 0.78 16 40 H 0.14 1.52 8.08 -2.38 -0.02 1.50 16 41 H 0.13 1.55 7.88 -2.39 -0.02 1.53 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.13 3.27 8.06 -2.92 -0.02 3.24 16 Total: -1.00 -91.85 386.26 2.30 -89.55 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.41 Total: 26.57 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.88 Total: -1.59 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -5.86 Total: -139.35 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.90 Total: 48.95 kcal Total: -91.85 2.30 -89.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495561279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.635 kcal (2) G-P(sol) polarization free energy of solvation -91.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds