Wall clock time and date at job start Sat Apr 11 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99738 * 2 1 4 4 H 1.48502 * 109.46919 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47471 * 299.99967 * 3 2 1 6 6 H 1.48500 * 109.47032 * 60.00120 * 3 2 1 7 7 C 1.38807 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99852 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47492 * 184.93394 * 10 9 7 12 12 H 1.09009 * 109.99520 * 54.21583 * 11 10 9 13 13 C 1.54338 * 109.99135 * 293.18603 * 11 10 9 14 14 C 1.55157 * 103.02103 * 218.65933 * 13 11 10 15 15 C 1.54920 * 101.57781 * 35.30457 * 14 13 11 16 16 N 1.47018 * 109.88903 * 175.31252 * 11 10 9 17 17 C 1.34768 * 125.64693 * 298.39752 * 16 11 10 18 18 O 1.21283 * 120.00148 * 354.64890 * 17 16 11 19 19 C 1.50706 * 120.00088 * 174.64660 * 17 16 11 20 20 C 1.50699 * 109.47439 * 179.97438 * 19 17 16 21 21 C 1.36170 * 120.19383 * 264.98615 * 20 19 17 22 22 C 1.39315 * 120.86810 * 179.97438 * 21 20 19 23 23 C 1.36110 * 121.06560 * 0.02562 * 22 21 20 24 24 C 1.40552 * 119.75223 * 359.97438 * 23 22 21 25 25 N 1.33686 * 121.08556 * 180.02562 * 24 23 22 26 26 C 1.31079 * 121.32616 * 179.97438 * 25 24 23 27 27 C 1.39341 * 121.75037 * 359.76032 * 26 25 24 28 28 C 1.36578 * 119.93661 * 0.50294 * 27 26 25 29 29 C 1.40392 * 120.19103 * 84.99845 * 20 19 17 30 30 H 0.97001 * 120.00252 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00346 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47002 * 64.93558 * 10 9 7 33 33 H 1.08998 * 109.47235 * 304.93758 * 10 9 7 34 34 H 1.09003 * 110.85450 * 100.19301 * 13 11 10 35 35 H 1.08996 * 110.66447 * 337.04205 * 13 11 10 36 36 H 1.08996 * 111.00576 * 277.23031 * 14 13 11 37 37 H 1.09001 * 111.04142 * 153.38847 * 14 13 11 38 38 H 1.09003 * 110.35995 * 204.15150 * 15 14 13 39 39 H 1.08997 * 110.45767 * 81.87753 * 15 14 13 40 40 H 1.09007 * 109.46730 * 60.00244 * 19 17 16 41 41 H 1.09000 * 109.47301 * 300.00658 * 19 17 16 42 42 H 1.07996 * 119.56591 * 359.97438 * 21 20 19 43 43 H 1.08002 * 119.46789 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.12463 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.12644 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.03364 * 180.29658 * 27 26 25 47 47 H 1.07996 * 120.91898 * 179.76781 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0685 -4.8170 -0.1246 12 1 0.4347 -4.6744 -0.9999 13 6 0.1945 -4.9031 1.1445 14 6 0.0586 -6.4319 1.3723 15 6 1.4482 -6.9395 0.9126 16 7 1.7994 -6.0876 -0.2382 17 6 2.6534 -6.4167 -1.2274 18 8 2.7991 -5.6739 -2.1750 19 6 3.4275 -7.7078 -1.1562 20 6 4.3035 -7.8364 -2.3757 21 6 3.8692 -8.5363 -3.4600 22 6 4.6671 -8.6636 -4.5949 23 6 5.9019 -8.0938 -4.6530 24 6 6.3853 -7.3634 -3.5537 25 7 7.5937 -6.7923 -3.5821 26 6 8.0491 -6.1097 -2.5599 27 6 7.2985 -5.9408 -1.3982 28 6 6.0576 -6.5028 -1.3007 29 6 5.5720 -7.2355 -2.4003 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0002 32 1 2.6167 -3.7537 0.9304 33 1 2.7494 -3.6772 -0.8430 34 1 -0.7823 -4.4503 0.9745 35 1 0.6954 -4.4304 1.9893 36 1 -0.7348 -6.8502 0.7529 37 1 -0.1108 -6.6571 2.4253 38 1 1.3882 -7.9841 0.6070 39 1 2.1807 -6.8199 1.7108 40 1 2.7323 -8.5466 -1.1185 41 1 4.0485 -7.7102 -0.2604 42 1 2.8935 -8.9987 -3.4400 43 1 4.3004 -9.2242 -5.4421 44 1 6.5078 -8.2025 -5.5403 45 1 9.0307 -5.6636 -2.6211 46 1 7.6990 -5.3688 -0.5743 47 1 5.4638 -6.3851 -0.4063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499912863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:40 Heat of formation + Delta-G solvation = 36.386251 kcal Electronic energy + Delta-G solvation = -29096.989868 eV Core-core repulsion = 25244.799923 eV Total energy + Delta-G solvation = -3852.189945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.11676 -39.97226 -37.77865 -36.96288 -34.54641 -34.17309 -32.02492 -31.33007 -31.10343 -30.64038 -28.86930 -27.61754 -25.09286 -24.36485 -23.71175 -23.28461 -22.09804 -21.46707 -20.35354 -18.86630 -18.25362 -17.30042 -17.22783 -17.07551 -16.74915 -16.32256 -15.17643 -14.80366 -14.57403 -14.47107 -14.33390 -14.25471 -13.87094 -13.73310 -13.43922 -13.24004 -13.16959 -13.01438 -12.72603 -12.70480 -12.27888 -12.18802 -11.77627 -11.72062 -11.54765 -11.35184 -11.19146 -10.91691 -10.83878 -10.59116 -10.56295 -10.40729 -10.00519 -9.79142 -9.63697 -9.58771 -8.85584 -8.84307 -8.46778 -8.28640 -6.89204 -5.73925 -3.02138 0.27413 0.74542 1.87360 2.72294 2.76700 3.10488 3.45678 3.51712 3.53863 4.00124 4.18727 4.28469 4.50714 4.55431 4.57354 4.64565 4.68014 4.68775 4.89103 4.93142 4.98706 5.02579 5.09494 5.18138 5.25468 5.34470 5.38309 5.41251 5.54829 5.60849 5.69982 5.77581 5.82519 5.89643 5.90889 5.95748 6.03048 6.05524 6.15777 6.23263 6.31686 6.39564 6.42954 6.52872 6.73704 6.81163 6.95675 7.64348 7.74335 7.80959 8.29903 8.45157 9.56203 10.12323 10.47996 11.49207 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.003358 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.879265 B = 8336.006741 C =10166.891904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.131 3.869 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.524 3.476 18 O -0.516 6.516 19 C -0.102 4.102 20 C -0.039 4.039 21 C -0.107 4.107 22 C -0.097 4.097 23 C -0.096 4.096 24 C 0.127 3.873 25 N -0.477 5.477 26 C 0.131 3.869 27 C -0.175 4.175 28 C -0.052 4.052 29 C -0.084 4.084 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.014 0.986 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.159 0.841 46 H 0.138 0.862 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.973 -23.782 0.396 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.020 3.980 11 C 0.028 3.972 12 H 0.094 0.906 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.349 5.349 17 C 0.312 3.688 18 O -0.391 6.391 19 C -0.142 4.142 20 C -0.040 4.040 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.114 4.114 24 C 0.006 3.994 25 N -0.185 5.185 26 C -0.042 4.042 27 C -0.195 4.195 28 C -0.078 4.078 29 C -0.086 4.086 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.031 0.969 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.176 0.824 46 H 0.156 0.844 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.694 -23.440 -1.020 25.021 hybrid contribution -0.433 1.202 0.865 1.543 sum 8.262 -22.238 -0.155 23.724 Atomic orbital electron populations 1.69665 1.05063 1.25479 1.58120 1.24712 0.95540 0.97604 1.03118 0.86114 0.78827 0.84113 0.77170 1.20580 1.21835 1.21861 1.19253 0.91028 0.84015 1.42233 0.91267 1.42202 1.05752 0.99707 1.89563 1.20913 0.93657 0.85274 0.98184 1.21820 0.93497 0.83393 0.98515 0.90572 1.22676 1.00698 0.95018 0.97590 1.22789 0.95971 0.96651 1.01762 1.22337 0.96996 0.94439 0.88677 1.48560 1.44680 1.17813 1.23896 1.20012 0.79471 0.87594 0.81759 1.90804 1.64294 1.52226 1.31734 1.20716 0.98323 0.97308 0.97824 1.19058 0.92825 0.96693 0.95429 1.20739 0.99683 0.99298 0.92742 1.20834 0.93853 0.99041 0.97978 1.20765 0.96232 0.97029 0.97400 1.18831 0.90396 0.96903 0.93279 1.68028 1.13167 1.08793 1.28490 1.22943 0.99466 0.93393 0.88403 1.21896 0.95801 1.01613 1.00149 1.21467 0.95197 0.93495 0.97605 1.18595 0.95160 0.99518 0.95312 0.93607 0.78311 0.96853 0.94787 0.89774 0.89934 0.90790 0.89953 0.90917 0.91319 0.87748 0.87938 0.85619 0.85222 0.84828 0.82424 0.84423 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 7 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.11 5.46 -59.91 -0.33 -19.44 16 10 C 0.15 3.22 5.66 -4.04 -0.02 3.20 16 11 C 0.13 2.24 2.92 -66.95 -0.20 2.04 16 12 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 13 C -0.12 -1.71 6.09 -24.89 -0.15 -1.86 16 14 C -0.13 -1.29 7.09 -24.58 -0.17 -1.46 16 15 C 0.10 0.93 6.65 -2.52 -0.02 0.91 16 16 N -0.61 -8.52 3.06 -163.00 -0.50 -9.02 16 17 C 0.52 7.80 7.56 -10.99 -0.08 7.72 16 18 O -0.52 -10.36 15.22 5.55 0.08 -10.28 16 19 C -0.10 -1.04 4.33 -29.03 -0.13 -1.17 16 20 C -0.04 -0.47 4.38 -104.56 -0.46 -0.93 16 21 C -0.11 -1.16 9.58 -39.92 -0.38 -1.54 16 22 C -0.10 -1.00 9.94 -39.95 -0.40 -1.40 16 23 C -0.10 -1.14 9.98 -39.47 -0.39 -1.54 16 24 C 0.13 1.79 6.60 -84.86 -0.56 1.22 16 25 N -0.48 -6.63 10.34 -10.98 -0.11 -6.74 16 26 C 0.13 1.51 11.15 -17.46 -0.19 1.31 16 27 C -0.17 -1.95 10.03 -39.77 -0.40 -2.35 16 28 C -0.05 -0.64 9.36 -39.22 -0.37 -1.01 16 29 C -0.08 -1.14 5.74 -106.80 -0.61 -1.76 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.38 10.34 7.44 -40.82 -0.30 10.04 16 32 H 0.01 0.29 8.04 -51.93 -0.42 -0.12 16 33 H 0.03 0.84 6.90 -51.93 -0.36 0.48 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.49 7.51 -51.93 -0.39 0.10 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.75 7.67 -51.92 -0.40 0.36 16 41 H 0.10 0.84 6.73 -51.93 -0.35 0.49 16 42 H 0.13 1.06 8.05 -52.49 -0.42 0.64 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 46 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 47 H 0.13 1.48 6.57 -52.49 -0.34 1.13 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -37.12 386.33 -10.85 -47.97 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.74 Total: 7.68 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.78 Total: -6.08 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.22 Total: -63.15 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.12 -10.85 -47.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499912863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.356 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds