Wall clock time and date at job start Sat Apr 11 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99738 * 2 1 4 4 H 1.48502 * 109.46919 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47471 * 299.99967 * 3 2 1 6 6 H 1.48500 * 109.47032 * 60.00120 * 3 2 1 7 7 C 1.38807 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99852 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47492 * 184.93394 * 10 9 7 12 12 H 1.09009 * 109.99520 * 54.21583 * 11 10 9 13 13 C 1.54338 * 109.99135 * 293.18603 * 11 10 9 14 14 C 1.55157 * 103.02103 * 218.65933 * 13 11 10 15 15 C 1.54920 * 101.57781 * 35.30457 * 14 13 11 16 16 N 1.47018 * 109.88903 * 175.31252 * 11 10 9 17 17 C 1.34768 * 125.64693 * 298.39752 * 16 11 10 18 18 O 1.21283 * 120.00148 * 354.64890 * 17 16 11 19 19 C 1.50706 * 120.00088 * 174.64660 * 17 16 11 20 20 C 1.50699 * 109.47439 * 179.97438 * 19 17 16 21 21 C 1.36170 * 120.19383 * 264.98615 * 20 19 17 22 22 C 1.39315 * 120.86810 * 179.97438 * 21 20 19 23 23 C 1.36110 * 121.06560 * 0.02562 * 22 21 20 24 24 C 1.40552 * 119.75223 * 359.97438 * 23 22 21 25 25 N 1.33686 * 121.08556 * 180.02562 * 24 23 22 26 26 C 1.31079 * 121.32616 * 179.97438 * 25 24 23 27 27 C 1.39341 * 121.75037 * 359.76032 * 26 25 24 28 28 C 1.36578 * 119.93661 * 0.50294 * 27 26 25 29 29 C 1.40392 * 120.19103 * 84.99845 * 20 19 17 30 30 H 0.97001 * 120.00252 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00346 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47002 * 64.93558 * 10 9 7 33 33 H 1.08998 * 109.47235 * 304.93758 * 10 9 7 34 34 H 1.09003 * 110.85450 * 100.19301 * 13 11 10 35 35 H 1.08996 * 110.66447 * 337.04205 * 13 11 10 36 36 H 1.08996 * 111.00576 * 277.23031 * 14 13 11 37 37 H 1.09001 * 111.04142 * 153.38847 * 14 13 11 38 38 H 1.09003 * 110.35995 * 204.15150 * 15 14 13 39 39 H 1.08997 * 110.45767 * 81.87753 * 15 14 13 40 40 H 1.09007 * 109.46730 * 60.00244 * 19 17 16 41 41 H 1.09000 * 109.47301 * 300.00658 * 19 17 16 42 42 H 1.07996 * 119.56591 * 359.97438 * 21 20 19 43 43 H 1.08002 * 119.46789 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.12463 * 179.97438 * 23 22 21 45 45 H 1.07999 * 119.12644 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.03364 * 180.29658 * 27 26 25 47 47 H 1.07996 * 120.91898 * 179.76781 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0685 -4.8170 -0.1246 12 1 0.4347 -4.6744 -0.9999 13 6 0.1945 -4.9031 1.1445 14 6 0.0586 -6.4319 1.3723 15 6 1.4482 -6.9395 0.9126 16 7 1.7994 -6.0876 -0.2382 17 6 2.6534 -6.4167 -1.2274 18 8 2.7991 -5.6739 -2.1750 19 6 3.4275 -7.7078 -1.1562 20 6 4.3035 -7.8364 -2.3757 21 6 3.8692 -8.5363 -3.4600 22 6 4.6671 -8.6636 -4.5949 23 6 5.9019 -8.0938 -4.6530 24 6 6.3853 -7.3634 -3.5537 25 7 7.5937 -6.7923 -3.5821 26 6 8.0491 -6.1097 -2.5599 27 6 7.2985 -5.9408 -1.3982 28 6 6.0576 -6.5028 -1.3007 29 6 5.5720 -7.2355 -2.4003 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0002 32 1 2.6167 -3.7537 0.9304 33 1 2.7494 -3.6772 -0.8430 34 1 -0.7823 -4.4503 0.9745 35 1 0.6954 -4.4304 1.9893 36 1 -0.7348 -6.8502 0.7529 37 1 -0.1108 -6.6571 2.4253 38 1 1.3882 -7.9841 0.6070 39 1 2.1807 -6.8199 1.7108 40 1 2.7323 -8.5466 -1.1185 41 1 4.0485 -7.7102 -0.2604 42 1 2.8935 -8.9987 -3.4400 43 1 4.3004 -9.2242 -5.4421 44 1 6.5078 -8.2025 -5.5403 45 1 9.0307 -5.6636 -2.6211 46 1 7.6990 -5.3688 -0.5743 47 1 5.4638 -6.3851 -0.4063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499912863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:39 Heat of formation + Delta-G solvation = 12.081478 kcal Electronic energy + Delta-G solvation = -29098.043802 eV Core-core repulsion = 25244.799923 eV Total energy + Delta-G solvation = -3853.243879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.01695 -41.08251 -38.86160 -37.94436 -36.44604 -35.11086 -33.58721 -32.78627 -32.03468 -31.49265 -30.39388 -28.54542 -26.74922 -25.26971 -24.83025 -24.57258 -23.59326 -22.38989 -21.47506 -20.12745 -19.13292 -19.07345 -18.11166 -18.07744 -17.93701 -17.46748 -16.52201 -16.26473 -15.76328 -15.53738 -15.39850 -15.26072 -15.10547 -15.07547 -14.92046 -14.60992 -14.17317 -14.03879 -13.83105 -13.74998 -13.62612 -13.20134 -12.96707 -12.91106 -12.76094 -12.62101 -12.54652 -12.19107 -12.16089 -12.03381 -11.93544 -11.76399 -11.58036 -11.49687 -11.05251 -10.86225 -10.51821 -9.72505 -9.65608 -9.16552 -9.08212 -8.01406 -5.31218 -0.59688 -0.13105 0.96099 1.41970 1.44193 1.53909 1.62070 1.86325 2.10793 2.52068 3.09483 3.31394 3.35985 3.43495 3.55217 3.67195 3.78681 3.82700 3.86084 3.91482 4.01052 4.09721 4.13123 4.22563 4.28855 4.33262 4.35430 4.45815 4.51005 4.54277 4.60224 4.75670 4.82628 4.85374 4.95663 5.01558 5.03269 5.05931 5.12927 5.14588 5.16605 5.35209 5.39587 5.40727 5.45797 5.48392 5.59217 5.91910 6.20552 6.58763 6.90433 7.19251 7.27131 7.98489 8.25735 9.22015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.003358 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.879265 B = 8336.006741 C =10166.891904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.737 5.737 10 C 0.156 3.844 11 C 0.138 3.862 12 H 0.045 0.955 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.093 3.907 16 N -0.612 5.612 17 C 0.519 3.481 18 O -0.580 6.580 19 C -0.088 4.088 20 C -0.056 4.056 21 C -0.111 4.111 22 C -0.093 4.093 23 C -0.116 4.116 24 C 0.096 3.904 25 N -0.504 5.504 26 C 0.122 3.878 27 C -0.179 4.179 28 C -0.069 4.069 29 C -0.106 4.106 30 H 0.254 0.746 31 H 0.377 0.623 32 H 0.019 0.981 33 H 0.000 1.000 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.142 0.858 45 H 0.187 0.813 46 H 0.163 0.837 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.958 -25.962 1.900 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.380 5.380 10 C 0.028 3.972 11 C 0.033 3.967 12 H 0.063 0.937 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.028 4.028 16 N -0.346 5.346 17 C 0.309 3.691 18 O -0.460 6.460 19 C -0.127 4.127 20 C -0.058 4.058 21 C -0.128 4.128 22 C -0.113 4.113 23 C -0.134 4.134 24 C -0.025 4.025 25 N -0.212 5.212 26 C -0.051 4.051 27 C -0.199 4.199 28 C -0.095 4.095 29 C -0.108 4.108 30 H 0.063 0.937 31 H 0.209 0.791 32 H 0.037 0.963 33 H 0.018 0.982 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.164 0.836 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.179 0.821 44 H 0.160 0.840 45 H 0.204 0.796 46 H 0.181 0.819 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.689 -25.680 0.525 27.115 hybrid contribution -0.414 1.878 0.364 1.957 sum 8.275 -23.802 0.889 25.215 Atomic orbital electron populations 1.69806 1.06441 1.26232 1.59014 1.25546 0.96500 1.00938 1.03142 0.85077 0.78010 0.79623 0.77060 1.19539 1.21919 1.21003 1.19565 0.91161 0.85450 1.42057 0.91616 1.42335 1.05573 1.00694 1.89434 1.20901 0.94053 0.85556 0.96642 1.21492 0.92545 0.83686 0.98972 0.93726 1.22584 0.99085 0.98928 0.95202 1.22812 0.96606 0.92331 1.03941 1.22738 0.97014 0.95658 0.87410 1.48667 1.43908 1.16937 1.25057 1.20915 0.78991 0.88476 0.80708 1.90779 1.66252 1.54538 1.34386 1.20752 0.98433 0.95543 0.97995 1.19353 0.92658 0.96963 0.96801 1.21171 1.00687 0.98700 0.92284 1.21234 0.93008 0.98188 0.98864 1.21026 0.97348 0.97632 0.97429 1.19249 0.90924 0.97909 0.94372 1.68042 1.13658 1.09887 1.29639 1.23499 1.00647 0.92813 0.88099 1.22232 0.95491 1.01334 1.00795 1.21726 0.95933 0.93887 0.97920 1.18892 0.96124 1.00238 0.95585 0.93718 0.79092 0.96276 0.98212 0.90839 0.91022 0.89826 0.86948 0.86715 0.89591 0.83645 0.85585 0.82883 0.82111 0.84031 0.79570 0.81902 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.29 13.06 21.65 0.28 -60.01 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.25 -14.99 9.99 84.03 0.84 -14.15 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.74 -40.25 5.46 -343.46 -1.87 -42.12 16 10 C 0.16 7.07 5.66 86.38 0.49 7.56 16 11 C 0.14 4.80 2.92 45.35 0.13 4.93 16 12 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 13 C -0.12 -3.27 6.09 31.79 0.19 -3.08 16 14 C -0.12 -1.86 7.09 31.99 0.23 -1.64 16 15 C 0.09 1.35 6.65 86.86 0.58 1.92 16 16 N -0.61 -16.06 3.06 -788.02 -2.41 -18.48 16 17 C 0.52 14.97 7.56 87.66 0.66 15.63 16 18 O -0.58 -24.10 15.22 -3.04 -0.05 -24.15 16 19 C -0.09 -1.56 4.33 29.10 0.13 -1.43 16 20 C -0.06 -1.31 4.38 -19.82 -0.09 -1.39 16 21 C -0.11 -2.20 9.58 22.05 0.21 -1.99 16 22 C -0.09 -1.82 9.94 22.03 0.22 -1.60 16 23 C -0.12 -2.79 9.98 22.34 0.22 -2.57 16 24 C 0.10 2.77 6.60 40.28 0.27 3.04 16 25 N -0.50 -14.43 10.34 -188.64 -1.95 -16.38 16 26 C 0.12 2.83 11.15 85.07 0.95 3.77 16 27 C -0.18 -3.97 10.03 22.15 0.22 -3.74 16 28 C -0.07 -1.71 9.36 22.50 0.21 -1.50 16 29 C -0.11 -2.91 5.74 -21.28 -0.12 -3.04 16 30 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.38 21.23 7.44 -92.71 -0.69 20.54 16 32 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 33 H 0.00 -0.01 6.90 -2.39 -0.02 -0.03 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 2.11 7.77 -2.39 -0.02 2.09 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 0.80 7.51 -2.39 -0.02 0.79 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.15 1.35 7.67 -2.38 -0.02 1.34 16 41 H 0.13 1.64 6.73 -2.39 -0.02 1.62 16 42 H 0.15 2.08 8.05 -2.91 -0.02 2.06 16 43 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 46 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 47 H 0.14 3.09 6.57 -2.91 -0.02 3.07 16 Total: -1.00 -86.48 386.33 2.13 -84.35 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.30 Total: 29.75 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.81 Total: -2.89 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -5.96 Total: -136.98 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -86.48 2.13 -84.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499912863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.430 kcal (2) G-P(sol) polarization free energy of solvation -86.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds