Wall clock time and date at job start Sat Apr 11 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00401 * 2 1 4 4 H 1.48498 * 109.47377 * 270.00303 * 3 2 1 5 5 H 1.48503 * 109.46897 * 30.00003 * 3 2 1 6 6 H 1.48495 * 109.47566 * 149.99774 * 3 2 1 7 7 C 1.38812 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00223 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47315 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.88548 * 57.42543 * 12 11 10 14 14 C 1.55160 * 111.00635 * 181.34884 * 12 11 10 15 15 C 1.54328 * 103.01888 * 153.38060 * 14 12 11 16 16 N 1.47021 * 107.27030 * 338.14131 * 15 14 12 17 17 C 1.34781 * 125.64880 * 178.85070 * 16 15 14 18 18 O 1.21544 * 119.99559 * 174.33898 * 17 16 15 19 19 C 1.47881 * 119.99969 * 354.61299 * 17 16 15 20 20 C 1.40604 * 119.73084 * 187.93044 * 19 17 16 21 21 C 1.35844 * 120.95292 * 179.97438 * 20 19 17 22 22 C 1.40498 * 119.88152 * 0.02562 * 21 20 19 23 23 C 1.40479 * 121.83516 * 179.97438 * 22 21 20 24 24 N 1.31215 * 119.94025 * 180.02562 * 23 22 21 25 25 C 1.32552 * 122.79667 * 0.02562 * 24 23 22 26 26 C 1.36217 * 121.85347 * 359.97438 * 25 24 23 27 27 C 1.40755 * 118.67623 * 0.02562 * 26 25 24 28 28 C 1.38528 * 119.73271 * 7.65730 * 19 17 16 29 29 C 1.47426 * 108.70173 * 358.58784 * 16 15 14 30 30 H 0.97002 * 119.99914 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00020 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46971 * 59.99829 * 10 9 7 33 33 H 1.09005 * 109.47234 * 299.99958 * 10 9 7 34 34 H 1.09001 * 109.47190 * 59.99958 * 11 10 9 35 35 H 1.08997 * 109.46955 * 299.99890 * 11 10 9 36 36 H 1.08999 * 110.72075 * 271.94102 * 14 12 11 37 37 H 1.08999 * 110.71767 * 35.03367 * 14 12 11 38 38 H 1.09007 * 109.98905 * 218.66428 * 15 14 12 39 39 H 1.09004 * 109.77715 * 97.50122 * 15 14 12 40 40 H 1.07998 * 119.51764 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.05753 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.03336 * 0.02562 * 23 22 21 43 43 H 1.08001 * 119.07264 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.66437 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.36392 * 0.02562 * 28 19 17 46 46 H 1.08997 * 110.36938 * 143.19469 * 29 16 15 47 47 H 1.09000 * 110.36270 * 265.51899 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8287 -6.1447 0.0005 13 1 2.4972 -6.2071 0.8592 14 6 0.8527 -7.3504 -0.0342 15 6 1.6929 -8.4586 -0.7033 16 7 2.7636 -7.7963 -1.4626 17 6 3.7250 -8.4200 -2.1719 18 8 4.5005 -7.7709 -2.8461 19 6 3.8325 -9.8945 -2.1347 20 6 4.9329 -10.5288 -2.7378 21 6 5.0568 -11.8815 -2.7179 22 6 4.0753 -12.6651 -2.0881 23 6 4.1620 -14.0665 -2.0436 24 7 3.2237 -14.7620 -1.4456 25 6 2.1717 -14.2001 -0.8672 26 6 1.9941 -12.8496 -0.8549 27 6 2.9595 -12.0356 -1.4768 28 6 2.8513 -10.6391 -1.5009 29 6 2.6077 -6.3368 -1.3246 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7146 -0.8895 34 1 0.4374 -4.7618 -0.8903 35 1 0.4368 -4.7622 0.8896 36 1 0.5618 -7.6403 0.9755 37 1 -0.0262 -7.1179 -0.6355 38 1 1.0679 -9.0442 -1.3777 39 1 2.1253 -9.1054 0.0601 40 1 5.6904 -9.9320 -3.2239 41 1 5.9082 -12.3536 -3.1854 42 1 5.0002 -14.5710 -2.5011 43 1 1.4347 -14.8307 -0.3922 44 1 1.1294 -12.4121 -0.3782 45 1 2.0093 -10.1487 -1.0351 46 1 3.5835 -5.8550 -1.2643 47 1 2.0366 -5.9356 -2.1619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501635245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:56 Heat of formation + Delta-G solvation = 52.058743 kcal Electronic energy + Delta-G solvation = -27799.606859 eV Core-core repulsion = 23948.096524 eV Total energy + Delta-G solvation = -3851.510335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47894 -40.32102 -38.19973 -37.24252 -35.30101 -33.74767 -33.01370 -31.78094 -31.03909 -30.33156 -29.56643 -27.28014 -25.74906 -24.41698 -23.75429 -23.53204 -22.47079 -21.33695 -20.59517 -20.09432 -18.50370 -17.75585 -17.37449 -17.11786 -16.53005 -16.13282 -15.85735 -15.31897 -15.04436 -14.69395 -14.62265 -14.27270 -14.13654 -14.07347 -13.58797 -13.53782 -13.36198 -13.14263 -13.06478 -12.89896 -12.72219 -12.35536 -12.20294 -11.77021 -11.60700 -11.17885 -11.05958 -10.84559 -10.73714 -10.67759 -10.50761 -10.38200 -10.24953 -10.00024 -9.92865 -9.67819 -9.55854 -8.90340 -8.86671 -8.58685 -6.91981 -5.76403 -3.04945 -0.27005 0.25871 1.36467 2.13619 2.63601 2.99377 3.44481 3.49587 3.51144 3.61713 3.88214 3.95316 4.02496 4.24234 4.29559 4.35347 4.44412 4.57023 4.60924 4.64598 4.66052 4.82226 4.91650 5.02408 5.07172 5.15047 5.20092 5.28564 5.42272 5.48026 5.54005 5.59466 5.60092 5.68011 5.73013 5.76466 5.83300 5.83949 6.00231 6.04638 6.11334 6.19071 6.27647 6.32896 6.34609 6.81674 6.85660 7.20507 7.48368 7.70944 7.85910 8.42820 9.53887 10.11789 10.46182 11.46578 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.001833 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472585 B =15274.098845 C =16118.162904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.131 4.131 15 C 0.087 3.913 16 N -0.611 5.611 17 C 0.567 3.433 18 O -0.529 6.529 19 C -0.100 4.100 20 C -0.071 4.071 21 C -0.094 4.094 22 C -0.099 4.099 23 C 0.144 3.856 24 N -0.485 5.485 25 C 0.072 3.928 26 C -0.147 4.147 27 C -0.033 4.033 28 C -0.112 4.112 29 C 0.110 3.890 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.172 0.828 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -31.600 -1.800 31.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.169 4.169 15 C -0.036 4.036 16 N -0.344 5.344 17 C 0.356 3.644 18 O -0.406 6.406 19 C -0.104 4.104 20 C -0.090 4.090 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.028 4.028 24 N -0.193 5.193 25 C -0.071 4.071 26 C -0.166 4.166 27 C -0.039 4.039 28 C -0.130 4.130 29 C -0.011 4.011 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.189 0.811 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.408 -32.071 -2.094 32.441 hybrid contribution 0.032 1.828 -0.020 1.829 sum 4.440 -30.243 -2.114 30.640 Atomic orbital electron populations 1.69659 1.05108 1.25628 1.57927 1.24746 0.95551 0.97726 1.03077 0.86179 0.78647 0.83776 0.77547 1.21704 1.21760 1.20760 1.19246 0.91071 0.84207 1.42506 0.91182 1.42354 1.05856 1.00073 1.89527 1.20686 0.93560 0.85589 0.97874 1.21686 0.98580 0.92368 1.02642 1.22356 0.96831 0.95019 0.97147 0.89526 1.22813 0.98269 0.94233 1.01616 1.22588 0.89292 0.96477 0.95223 1.48417 1.28057 1.08505 1.49409 1.17932 0.80162 0.86926 0.79399 1.90813 1.42390 1.66912 1.40506 1.20031 0.96754 0.93049 1.00588 1.20958 0.96774 0.94620 0.96653 1.20921 0.98352 0.93365 0.98700 1.19214 0.95754 0.95547 0.99602 1.23273 0.96457 0.89318 0.93766 1.67403 1.02139 1.41556 1.08168 1.22217 0.95189 0.92887 0.96758 1.21983 0.99481 0.94974 1.00180 1.18164 0.94503 0.93776 0.97408 1.23044 1.00032 0.92758 0.97135 1.22484 1.01845 0.78837 0.97972 0.93543 0.78329 0.96430 0.96264 0.91507 0.91184 0.89549 0.89895 0.90393 0.90318 0.84105 0.84201 0.81772 0.82781 0.84105 0.81113 0.89737 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.62 5.60 -59.91 -0.34 -18.96 16 10 C 0.15 2.94 6.11 -4.04 -0.02 2.92 16 11 C -0.11 -1.66 4.84 -26.73 -0.13 -1.79 16 12 C -0.09 -1.04 3.08 -88.47 -0.27 -1.32 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.13 -1.03 6.42 -24.89 -0.16 -1.19 16 15 C 0.09 0.65 4.87 -3.06 -0.01 0.63 16 16 N -0.61 -6.87 3.33 -177.62 -0.59 -7.46 16 17 C 0.57 7.32 7.80 -12.31 -0.10 7.22 16 18 O -0.53 -8.78 16.64 5.33 0.09 -8.69 16 19 C -0.10 -1.02 5.87 -104.95 -0.62 -1.64 16 20 C -0.07 -0.66 9.49 -39.55 -0.38 -1.03 16 21 C -0.09 -0.67 9.77 -39.59 -0.39 -1.06 16 22 C -0.10 -0.79 5.75 -106.78 -0.61 -1.40 16 23 C 0.14 1.04 11.04 -16.97 -0.19 0.85 16 24 N -0.48 -4.15 10.29 -13.15 -0.14 -4.29 16 25 C 0.07 0.51 11.07 -17.97 -0.20 0.31 16 26 C -0.15 -0.95 9.88 -39.36 -0.39 -1.34 16 27 C -0.03 -0.27 5.74 -106.83 -0.61 -0.88 16 28 C -0.11 -0.91 8.39 -38.78 -0.33 -1.23 16 29 C 0.11 1.39 5.55 -2.53 -0.01 1.37 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.38 10.12 7.67 -40.82 -0.31 9.80 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.39 7.46 -51.93 -0.39 0.00 16 34 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.64 8.04 -51.93 -0.42 0.23 16 38 H 0.08 0.46 6.83 -51.93 -0.35 0.10 16 39 H 0.08 0.47 6.64 -51.93 -0.34 0.13 16 40 H 0.14 1.30 7.63 -52.49 -0.40 0.90 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.17 1.04 2.71 -60.24 -0.16 0.87 16 46 H 0.08 1.20 8.02 -51.93 -0.42 0.79 16 47 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -35.51 382.96 -10.73 -46.23 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.56 Total: 4.47 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -4.66 Total: -7.05 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.34 Total: -58.34 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.51 -10.73 -46.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501635245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.292 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds