Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00401 * 2 1 4 4 H 1.48498 * 109.47377 * 270.00303 * 3 2 1 5 5 H 1.48503 * 109.46897 * 30.00003 * 3 2 1 6 6 H 1.48495 * 109.47566 * 149.99774 * 3 2 1 7 7 C 1.38812 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00223 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47315 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.88548 * 57.42543 * 12 11 10 14 14 C 1.55160 * 111.00635 * 181.34884 * 12 11 10 15 15 C 1.54328 * 103.01888 * 153.38060 * 14 12 11 16 16 N 1.47021 * 107.27030 * 338.14131 * 15 14 12 17 17 C 1.34781 * 125.64880 * 178.85070 * 16 15 14 18 18 O 1.21544 * 119.99559 * 174.33898 * 17 16 15 19 19 C 1.47881 * 119.99969 * 354.61299 * 17 16 15 20 20 C 1.40604 * 119.73084 * 187.93044 * 19 17 16 21 21 C 1.35844 * 120.95292 * 179.97438 * 20 19 17 22 22 C 1.40498 * 119.88152 * 0.02562 * 21 20 19 23 23 C 1.40479 * 121.83516 * 179.97438 * 22 21 20 24 24 N 1.31215 * 119.94025 * 180.02562 * 23 22 21 25 25 C 1.32552 * 122.79667 * 0.02562 * 24 23 22 26 26 C 1.36217 * 121.85347 * 359.97438 * 25 24 23 27 27 C 1.40755 * 118.67623 * 0.02562 * 26 25 24 28 28 C 1.38528 * 119.73271 * 7.65730 * 19 17 16 29 29 C 1.47426 * 108.70173 * 358.58784 * 16 15 14 30 30 H 0.97002 * 119.99914 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00020 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46971 * 59.99829 * 10 9 7 33 33 H 1.09005 * 109.47234 * 299.99958 * 10 9 7 34 34 H 1.09001 * 109.47190 * 59.99958 * 11 10 9 35 35 H 1.08997 * 109.46955 * 299.99890 * 11 10 9 36 36 H 1.08999 * 110.72075 * 271.94102 * 14 12 11 37 37 H 1.08999 * 110.71767 * 35.03367 * 14 12 11 38 38 H 1.09007 * 109.98905 * 218.66428 * 15 14 12 39 39 H 1.09004 * 109.77715 * 97.50122 * 15 14 12 40 40 H 1.07998 * 119.51764 * 359.97438 * 20 19 17 41 41 H 1.08000 * 120.05753 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.03336 * 0.02562 * 23 22 21 43 43 H 1.08001 * 119.07264 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.66437 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.36392 * 0.02562 * 28 19 17 46 46 H 1.08997 * 110.36938 * 143.19469 * 29 16 15 47 47 H 1.09000 * 110.36270 * 265.51899 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8287 -6.1447 0.0005 13 1 2.4972 -6.2071 0.8592 14 6 0.8527 -7.3504 -0.0342 15 6 1.6929 -8.4586 -0.7033 16 7 2.7636 -7.7963 -1.4626 17 6 3.7250 -8.4200 -2.1719 18 8 4.5005 -7.7709 -2.8461 19 6 3.8325 -9.8945 -2.1347 20 6 4.9329 -10.5288 -2.7378 21 6 5.0568 -11.8815 -2.7179 22 6 4.0753 -12.6651 -2.0881 23 6 4.1620 -14.0665 -2.0436 24 7 3.2237 -14.7620 -1.4456 25 6 2.1717 -14.2001 -0.8672 26 6 1.9941 -12.8496 -0.8549 27 6 2.9595 -12.0356 -1.4768 28 6 2.8513 -10.6391 -1.5009 29 6 2.6077 -6.3368 -1.3246 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7146 -0.8895 34 1 0.4374 -4.7618 -0.8903 35 1 0.4368 -4.7622 0.8896 36 1 0.5618 -7.6403 0.9755 37 1 -0.0262 -7.1179 -0.6355 38 1 1.0679 -9.0442 -1.3777 39 1 2.1253 -9.1054 0.0601 40 1 5.6904 -9.9320 -3.2239 41 1 5.9082 -12.3536 -3.1854 42 1 5.0002 -14.5710 -2.5011 43 1 1.4347 -14.8307 -0.3922 44 1 1.1294 -12.4121 -0.3782 45 1 2.0093 -10.1487 -1.0351 46 1 3.5835 -5.8550 -1.2643 47 1 2.0366 -5.9356 -2.1619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501635245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 29.561914 kcal Electronic energy + Delta-G solvation = -27800.582394 eV Core-core repulsion = 23948.096524 eV Total energy + Delta-G solvation = -3852.485871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.12709 -41.09462 -39.11039 -37.96296 -36.92236 -34.85165 -33.97224 -32.93285 -32.15808 -31.02417 -30.60356 -28.53866 -26.69923 -25.55360 -24.75083 -24.35835 -23.36598 -22.59131 -21.43506 -21.09023 -19.23937 -19.08910 -18.43298 -17.98937 -17.38082 -16.91705 -16.67113 -16.63966 -16.03924 -15.85600 -15.39689 -15.28721 -15.19383 -14.97294 -14.75125 -14.61669 -14.48894 -14.19329 -13.96138 -13.64577 -13.60622 -13.26500 -13.05309 -12.98678 -12.84699 -12.83142 -12.37463 -12.22794 -12.06560 -11.85777 -11.66710 -11.57112 -11.33144 -11.24365 -11.18367 -10.94182 -10.48767 -10.23336 -9.79484 -9.11771 -9.01565 -7.97594 -5.26222 -0.84733 -0.34170 0.81229 1.40632 1.45657 1.47450 1.55901 1.76967 2.25693 2.54260 3.05217 3.18111 3.35864 3.40490 3.52034 3.54476 3.65515 3.76847 3.78847 3.82815 4.03318 4.05276 4.14268 4.19221 4.31124 4.32403 4.42739 4.48264 4.53862 4.57887 4.64464 4.73673 4.75313 4.79072 4.87980 4.91922 4.92829 5.04933 5.08697 5.13348 5.18894 5.25011 5.29756 5.37835 5.45676 5.48240 5.59859 5.72874 6.25722 6.33339 6.92087 6.98386 7.31767 8.08258 8.31658 9.25767 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.001833 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.472585 B =15274.098845 C =16118.162904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.100 4.100 12 C -0.085 4.085 13 H 0.091 0.909 14 C -0.120 4.120 15 C 0.080 3.920 16 N -0.610 5.610 17 C 0.560 3.440 18 O -0.583 6.583 19 C -0.121 4.121 20 C -0.093 4.093 21 C -0.082 4.082 22 C -0.110 4.110 23 C 0.140 3.860 24 N -0.508 5.508 25 C 0.061 3.939 26 C -0.141 4.141 27 C -0.050 4.050 28 C -0.097 4.097 29 C 0.108 3.892 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.168 0.832 42 H 0.190 0.810 43 H 0.177 0.823 44 H 0.173 0.827 45 H 0.194 0.806 46 H 0.057 0.943 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.081 -34.125 -0.634 34.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.020 3.980 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.110 0.890 14 C -0.158 4.158 15 C -0.041 4.041 16 N -0.341 5.341 17 C 0.351 3.649 18 O -0.465 6.465 19 C -0.125 4.125 20 C -0.112 4.112 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.031 4.031 24 N -0.216 5.216 25 C -0.081 4.081 26 C -0.160 4.160 27 C -0.055 4.055 28 C -0.114 4.114 29 C -0.015 4.015 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.186 0.814 42 H 0.206 0.794 43 H 0.194 0.806 44 H 0.190 0.810 45 H 0.210 0.790 46 H 0.075 0.925 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.620 -34.645 -0.904 34.845 hybrid contribution 0.286 2.492 -0.379 2.537 sum 3.906 -32.152 -1.283 32.414 Atomic orbital electron populations 1.69802 1.06470 1.26144 1.59350 1.25566 0.96489 1.01071 1.03588 0.85149 0.77727 0.79501 0.77443 1.21485 1.21755 1.19597 1.19628 0.91421 0.85637 1.41472 0.91087 1.42579 1.05716 1.01275 1.89420 1.20880 0.94510 0.85354 0.97218 1.21522 0.97500 0.91946 1.02807 1.22216 0.97344 0.94742 0.96150 0.89044 1.22826 0.97340 0.92122 1.03502 1.22931 0.88519 0.96701 0.95941 1.48489 1.28518 1.08009 1.49111 1.18455 0.79657 0.88091 0.78704 1.90770 1.44513 1.68205 1.42965 1.19903 0.98410 0.91336 1.02890 1.20980 0.96898 0.95521 0.97830 1.21165 0.98884 0.92399 0.97666 1.19453 0.95993 0.96124 0.99691 1.23672 0.96946 0.89082 0.93444 1.67447 1.02951 1.42376 1.08818 1.22675 0.95249 0.93667 0.96536 1.22297 0.99802 0.94601 0.99317 1.18439 0.95211 0.93928 0.97906 1.23204 0.99609 0.92740 0.95867 1.22354 1.00469 0.80034 0.98598 0.93894 0.79259 0.96423 0.97025 0.91774 0.90484 0.86695 0.89364 0.87910 0.87884 0.85278 0.81443 0.79350 0.80592 0.80969 0.79002 0.92461 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 9 N -0.75 -38.52 5.60 -343.44 -1.92 -40.44 16 10 C 0.15 5.82 6.11 86.38 0.53 6.35 16 11 C -0.10 -2.81 4.84 30.59 0.15 -2.66 16 12 C -0.08 -1.77 3.08 -9.40 -0.03 -1.80 16 13 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.12 -1.47 6.42 31.79 0.20 -1.27 16 15 C 0.08 0.93 4.87 86.73 0.42 1.36 16 16 N -0.61 -13.40 3.33 -834.14 -2.77 -16.17 16 17 C 0.56 14.91 7.80 86.80 0.68 15.59 16 18 O -0.58 -20.85 16.64 -3.85 -0.06 -20.92 16 19 C -0.12 -2.45 5.87 -20.08 -0.12 -2.56 16 20 C -0.09 -1.75 9.49 22.29 0.21 -1.54 16 21 C -0.08 -1.08 9.77 22.27 0.22 -0.87 16 22 C -0.11 -1.54 5.75 -21.26 -0.12 -1.66 16 23 C 0.14 1.71 11.04 85.33 0.94 2.66 16 24 N -0.51 -7.53 10.29 -195.52 -2.01 -9.54 16 25 C 0.06 0.68 11.07 84.11 0.93 1.61 16 26 C -0.14 -1.32 9.88 22.41 0.22 -1.10 16 27 C -0.05 -0.68 5.74 -21.29 -0.12 -0.80 16 28 C -0.10 -1.35 8.39 22.79 0.19 -1.15 16 29 C 0.11 2.78 5.55 86.86 0.48 3.26 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.38 20.19 7.67 -92.71 -0.71 19.48 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.01 0.49 7.46 -2.38 -0.02 0.47 16 34 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.05 8.04 -2.39 -0.02 1.03 16 38 H 0.10 0.78 6.83 -2.38 -0.02 0.76 16 39 H 0.10 0.78 6.64 -2.38 -0.02 0.77 16 40 H 0.13 2.62 7.63 -2.91 -0.02 2.60 16 41 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 45 H 0.19 1.60 2.71 -10.19 -0.03 1.57 16 46 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 47 H 0.06 1.77 8.00 -2.39 -0.02 1.75 16 Total: -1.00 -80.01 382.96 1.89 -78.11 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.27 Total: 21.23 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 6.09 Total: -2.00 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.43 Total: -125.35 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -80.01 1.89 -78.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501635245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.677 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds