Wall clock time and date at job start Sat Apr 11 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47017 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46870 * 120.00376 * 3 2 1 6 6 H 1.48500 * 109.47431 * 240.00462 * 3 2 1 7 7 C 1.38809 * 119.99991 * 180.28362 * 2 1 3 8 8 H 1.07998 * 120.00188 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99677 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47051 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47172 * 179.97438 * 11 10 9 13 13 H 1.08994 * 110.88869 * 305.70072 * 12 11 10 14 14 C 1.55161 * 111.00456 * 181.81793 * 12 11 10 15 15 C 1.54360 * 102.92111 * 206.45460 * 14 12 11 16 16 N 1.47023 * 107.29159 * 22.14204 * 15 14 12 17 17 C 1.34776 * 125.65087 * 181.06156 * 16 15 14 18 18 O 1.21545 * 119.99894 * 174.34003 * 17 16 15 19 19 C 1.47883 * 120.00250 * 354.33163 * 17 16 15 20 20 C 1.40598 * 119.73361 * 187.43006 * 19 17 16 21 21 C 1.35851 * 120.95218 * 179.97438 * 20 19 17 22 22 C 1.40493 * 119.88280 * 0.02562 * 21 20 19 23 23 C 1.40481 * 121.84823 * 180.02562 * 22 21 20 24 24 N 1.31209 * 119.93940 * 179.97438 * 23 22 21 25 25 C 1.32557 * 122.81058 * 359.97438 * 24 23 22 26 26 C 1.36217 * 121.84067 * 0.02562 * 25 24 23 27 27 C 1.40756 * 118.67786 * 359.95281 * 26 25 24 28 28 C 1.38532 * 119.72710 * 7.15924 * 19 17 16 29 29 C 1.47424 * 108.70114 * 1.08866 * 16 15 14 30 30 H 0.96997 * 119.99994 * 359.71543 * 1 2 3 31 31 H 0.97001 * 120.00224 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46782 * 299.99334 * 10 9 7 33 33 H 1.08989 * 109.47792 * 59.99628 * 10 9 7 34 34 H 1.08998 * 109.46975 * 299.99450 * 11 10 9 35 35 H 1.09003 * 109.47027 * 59.99269 * 11 10 9 36 36 H 1.08999 * 110.72162 * 324.79363 * 14 12 11 37 37 H 1.09002 * 110.71744 * 88.05937 * 14 12 11 38 38 H 1.09006 * 109.85025 * 262.73128 * 15 14 12 39 39 H 1.09000 * 110.03262 * 141.64776 * 15 14 12 40 40 H 1.07996 * 119.52433 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.05561 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.03178 * 359.97438 * 23 22 21 43 43 H 1.07996 * 119.07887 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.66313 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.36625 * 359.97438 * 28 19 17 46 46 H 1.09002 * 110.36936 * 217.03715 * 29 16 15 47 47 H 1.09001 * 110.46181 * 94.76034 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0060 8 1 3.0903 -1.2021 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0581 -3.6567 -0.0170 11 6 1.0638 -4.8197 -0.0216 12 6 1.8288 -6.1447 -0.0282 13 1 2.5371 -6.1803 -0.8558 14 6 0.8530 -7.3500 -0.0790 15 6 1.6647 -8.4796 0.5903 16 7 2.6945 -7.8427 1.4243 17 6 3.6217 -8.4894 2.1580 18 8 4.4907 -7.8609 2.7300 19 6 3.5819 -9.9637 2.2673 20 6 4.4513 -10.6208 3.1556 21 6 4.4353 -11.9739 3.2762 22 6 3.5405 -12.7348 2.5053 23 6 3.4886 -14.1357 2.5973 24 7 2.6377 -14.8093 1.8598 25 6 1.8030 -14.2254 1.0116 26 6 1.7739 -12.8734 0.8479 27 6 2.6578 -12.0821 1.6054 28 6 2.6843 -10.6855 1.4976 29 6 2.5443 -6.3795 1.3256 30 1 -0.4850 0.8400 0.0042 31 1 0.3555 -2.3880 -0.0105 32 1 2.6846 -3.7104 -0.9073 33 1 2.6847 -3.7185 0.8725 34 1 0.4376 -4.7658 0.8689 35 1 0.4367 -4.7580 -0.9110 36 1 -0.0525 -7.1373 0.4892 37 1 0.6110 -7.6070 -1.1102 38 1 2.1364 -9.0986 -0.1729 39 1 1.0108 -9.0915 1.2117 40 1 5.1411 -10.0416 3.7513 41 1 5.1098 -12.4638 3.9628 42 1 4.1485 -14.6577 3.2744 43 1 1.1277 -14.8387 0.4337 44 1 1.0855 -12.4176 0.1516 45 1 2.0144 -10.1775 0.8197 46 1 3.5217 -5.8968 1.3267 47 1 1.9350 -6.0026 2.1471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501635246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:59 Heat of formation + Delta-G solvation = 52.376463 kcal Electronic energy + Delta-G solvation = -27782.325425 eV Core-core repulsion = 23930.828867 eV Total energy + Delta-G solvation = -3851.496558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47997 -40.32190 -38.19600 -37.24337 -35.29828 -33.74925 -33.01321 -31.78196 -31.03656 -30.33363 -29.56395 -27.28959 -25.74447 -24.41272 -23.74684 -23.53464 -22.46820 -21.32177 -20.59177 -20.12783 -18.51228 -17.76596 -17.37938 -17.11333 -16.48035 -16.17998 -15.77466 -15.30637 -15.12621 -14.70269 -14.62562 -14.24566 -14.14203 -14.07758 -13.57324 -13.54521 -13.37302 -13.13713 -13.03704 -12.89719 -12.76320 -12.34836 -12.20533 -11.76546 -11.59341 -11.18030 -11.05211 -10.83394 -10.72983 -10.68598 -10.50685 -10.39170 -10.24999 -10.01787 -9.92885 -9.67266 -9.56007 -8.90249 -8.85957 -8.58774 -6.91803 -5.76036 -3.04675 -0.27147 0.25726 1.36380 2.13420 2.63298 2.99474 3.45252 3.49297 3.50530 3.61684 3.88013 3.95142 4.02504 4.24307 4.29446 4.35223 4.45468 4.55533 4.60832 4.63952 4.66869 4.82134 4.90600 5.03340 5.07063 5.15399 5.20027 5.28516 5.42428 5.48278 5.54381 5.59675 5.60064 5.67313 5.73564 5.76335 5.82688 5.84249 6.00115 6.04725 6.11248 6.19858 6.27587 6.33265 6.34708 6.82163 6.85977 7.20276 7.48333 7.70710 7.85661 8.43220 9.54143 10.12052 10.46467 11.46860 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.001821 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.267715 B =15371.398863 C =16208.554897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.131 4.131 15 C 0.087 3.913 16 N -0.611 5.611 17 C 0.567 3.433 18 O -0.529 6.529 19 C -0.100 4.100 20 C -0.071 4.071 21 C -0.094 4.094 22 C -0.099 4.099 23 C 0.144 3.856 24 N -0.485 5.485 25 C 0.072 3.928 26 C -0.147 4.147 27 C -0.033 4.033 28 C -0.112 4.112 29 C 0.109 3.891 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.173 0.827 46 H 0.085 0.915 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -31.636 2.433 31.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.169 4.169 15 C -0.036 4.036 16 N -0.344 5.344 17 C 0.356 3.644 18 O -0.406 6.406 19 C -0.105 4.105 20 C -0.090 4.090 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.028 4.028 24 N -0.193 5.193 25 C -0.070 4.070 26 C -0.166 4.166 27 C -0.039 4.039 28 C -0.130 4.130 29 C -0.013 4.013 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.159 0.841 45 H 0.189 0.811 46 H 0.104 0.896 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.423 -32.112 2.743 32.410 hybrid contribution 0.142 1.822 -0.083 1.829 sum 3.565 -30.290 2.660 30.615 Atomic orbital electron populations 1.69649 1.05104 1.25750 1.57846 1.24745 0.95550 0.97719 1.03051 0.86254 0.78516 0.83472 0.77882 1.21670 1.21251 1.21264 1.19202 0.91041 0.84221 1.42642 0.91235 1.42351 1.05846 1.00065 1.89547 1.20682 0.93551 0.85586 0.97871 1.21686 0.98583 0.92375 1.02630 1.22358 0.97190 0.94960 0.96869 0.89507 1.22821 0.98497 0.93992 1.01592 1.22592 0.90321 0.96679 0.93992 1.48401 1.31398 1.08436 1.46152 1.17931 0.80799 0.86774 0.78880 1.90811 1.35145 1.68187 1.46502 1.20032 0.98246 0.93087 0.99085 1.20958 0.97141 0.94423 0.96477 1.20923 0.98054 0.93543 0.98825 1.19216 0.97538 0.95532 0.97827 1.23273 0.94687 0.89543 0.95310 1.67397 1.04626 1.41602 1.05645 1.22218 0.96525 0.92647 0.95658 1.21984 0.99340 0.95157 1.00135 1.18166 0.95847 0.93767 0.96080 1.23063 0.98117 0.92958 0.98863 1.22490 1.02158 0.78671 0.97945 0.93491 0.78328 0.96427 0.96289 0.91517 0.91184 0.89866 0.89537 0.90380 0.90360 0.84104 0.84201 0.81770 0.82777 0.84103 0.81071 0.89622 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.63 5.60 -59.91 -0.34 -18.96 16 10 C 0.15 2.95 6.14 -4.04 -0.02 2.93 16 11 C -0.11 -1.66 4.84 -26.73 -0.13 -1.79 16 12 C -0.09 -1.05 3.04 -88.47 -0.27 -1.32 16 13 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.13 -1.03 6.42 -24.87 -0.16 -1.19 16 15 C 0.09 0.64 4.87 -3.04 -0.01 0.63 16 16 N -0.61 -6.85 3.33 -178.06 -0.59 -7.44 16 17 C 0.57 7.31 7.81 -12.31 -0.10 7.21 16 18 O -0.53 -8.76 16.56 5.33 0.09 -8.67 16 19 C -0.10 -1.03 5.87 -104.95 -0.62 -1.64 16 20 C -0.07 -0.66 9.49 -39.55 -0.38 -1.03 16 21 C -0.09 -0.67 9.77 -39.59 -0.39 -1.06 16 22 C -0.10 -0.79 5.75 -106.78 -0.61 -1.40 16 23 C 0.14 1.04 11.04 -16.97 -0.19 0.85 16 24 N -0.48 -4.15 10.29 -13.15 -0.14 -4.29 16 25 C 0.07 0.51 11.07 -17.97 -0.20 0.31 16 26 C -0.15 -0.95 9.88 -39.36 -0.39 -1.34 16 27 C -0.03 -0.27 5.74 -106.83 -0.61 -0.88 16 28 C -0.11 -0.91 8.40 -38.78 -0.33 -1.24 16 29 C 0.11 1.36 5.74 -2.53 -0.01 1.35 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.38 7.59 -51.94 -0.39 -0.01 16 34 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.64 8.04 -51.93 -0.42 0.23 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.46 6.73 -51.93 -0.35 0.11 16 39 H 0.08 0.47 6.73 -51.93 -0.35 0.12 16 40 H 0.14 1.29 7.63 -52.49 -0.40 0.89 16 41 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 43 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 45 H 0.17 1.04 2.68 -60.82 -0.16 0.88 16 46 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 47 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -35.47 383.01 -10.72 -46.19 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.56 Total: 4.53 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -4.66 Total: -7.09 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.34 Total: -58.33 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.47 -10.72 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501635246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.569 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds