Wall clock time and date at job start Sat Apr 11 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47017 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46870 * 120.00376 * 3 2 1 6 6 H 1.48500 * 109.47431 * 240.00462 * 3 2 1 7 7 C 1.38809 * 119.99991 * 180.28362 * 2 1 3 8 8 H 1.07998 * 120.00188 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99794 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99677 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47051 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47172 * 179.97438 * 11 10 9 13 13 H 1.08994 * 110.88869 * 305.70072 * 12 11 10 14 14 C 1.55161 * 111.00456 * 181.81793 * 12 11 10 15 15 C 1.54360 * 102.92111 * 206.45460 * 14 12 11 16 16 N 1.47023 * 107.29159 * 22.14204 * 15 14 12 17 17 C 1.34776 * 125.65087 * 181.06156 * 16 15 14 18 18 O 1.21545 * 119.99894 * 174.34003 * 17 16 15 19 19 C 1.47883 * 120.00250 * 354.33163 * 17 16 15 20 20 C 1.40598 * 119.73361 * 187.43006 * 19 17 16 21 21 C 1.35851 * 120.95218 * 179.97438 * 20 19 17 22 22 C 1.40493 * 119.88280 * 0.02562 * 21 20 19 23 23 C 1.40481 * 121.84823 * 180.02562 * 22 21 20 24 24 N 1.31209 * 119.93940 * 179.97438 * 23 22 21 25 25 C 1.32557 * 122.81058 * 359.97438 * 24 23 22 26 26 C 1.36217 * 121.84067 * 0.02562 * 25 24 23 27 27 C 1.40756 * 118.67786 * 359.95281 * 26 25 24 28 28 C 1.38532 * 119.72710 * 7.15924 * 19 17 16 29 29 C 1.47424 * 108.70114 * 1.08866 * 16 15 14 30 30 H 0.96997 * 119.99994 * 359.71543 * 1 2 3 31 31 H 0.97001 * 120.00224 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.46782 * 299.99334 * 10 9 7 33 33 H 1.08989 * 109.47792 * 59.99628 * 10 9 7 34 34 H 1.08998 * 109.46975 * 299.99450 * 11 10 9 35 35 H 1.09003 * 109.47027 * 59.99269 * 11 10 9 36 36 H 1.08999 * 110.72162 * 324.79363 * 14 12 11 37 37 H 1.09002 * 110.71744 * 88.05937 * 14 12 11 38 38 H 1.09006 * 109.85025 * 262.73128 * 15 14 12 39 39 H 1.09000 * 110.03262 * 141.64776 * 15 14 12 40 40 H 1.07996 * 119.52433 * 0.02562 * 20 19 17 41 41 H 1.08003 * 120.05561 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.03178 * 359.97438 * 23 22 21 43 43 H 1.07996 * 119.07887 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.66313 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.36625 * 359.97438 * 28 19 17 46 46 H 1.09002 * 110.36936 * 217.03715 * 29 16 15 47 47 H 1.09001 * 110.46181 * 94.76034 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0060 8 1 3.0903 -1.2021 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0581 -3.6567 -0.0170 11 6 1.0638 -4.8197 -0.0216 12 6 1.8288 -6.1447 -0.0282 13 1 2.5371 -6.1803 -0.8558 14 6 0.8530 -7.3500 -0.0790 15 6 1.6647 -8.4796 0.5903 16 7 2.6945 -7.8427 1.4243 17 6 3.6217 -8.4894 2.1580 18 8 4.4907 -7.8609 2.7300 19 6 3.5819 -9.9637 2.2673 20 6 4.4513 -10.6208 3.1556 21 6 4.4353 -11.9739 3.2762 22 6 3.5405 -12.7348 2.5053 23 6 3.4886 -14.1357 2.5973 24 7 2.6377 -14.8093 1.8598 25 6 1.8030 -14.2254 1.0116 26 6 1.7739 -12.8734 0.8479 27 6 2.6578 -12.0821 1.6054 28 6 2.6843 -10.6855 1.4976 29 6 2.5443 -6.3795 1.3256 30 1 -0.4850 0.8400 0.0042 31 1 0.3555 -2.3880 -0.0105 32 1 2.6846 -3.7104 -0.9073 33 1 2.6847 -3.7185 0.8725 34 1 0.4376 -4.7658 0.8689 35 1 0.4367 -4.7580 -0.9110 36 1 -0.0525 -7.1373 0.4892 37 1 0.6110 -7.6070 -1.1102 38 1 2.1364 -9.0986 -0.1729 39 1 1.0108 -9.0915 1.2117 40 1 5.1411 -10.0416 3.7513 41 1 5.1098 -12.4638 3.9628 42 1 4.1485 -14.6577 3.2744 43 1 1.1277 -14.8387 0.4337 44 1 1.0855 -12.4176 0.1516 45 1 2.0144 -10.1775 0.8197 46 1 3.5217 -5.8968 1.3267 47 1 1.9350 -6.0026 2.1471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501635246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:58 Heat of formation + Delta-G solvation = 29.930531 kcal Electronic energy + Delta-G solvation = -27783.298754 eV Core-core repulsion = 23930.828867 eV Total energy + Delta-G solvation = -3852.469886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12727 -41.09390 -39.10426 -37.96298 -36.92021 -34.85048 -33.97241 -32.93456 -32.15623 -31.02240 -30.60099 -28.54889 -26.69042 -25.54947 -24.74953 -24.35072 -23.36197 -22.58820 -21.43764 -21.10947 -19.23682 -19.09930 -18.44191 -17.99597 -17.32074 -16.93207 -16.64729 -16.61179 -16.09638 -15.85163 -15.39510 -15.29441 -15.18421 -15.01415 -14.75059 -14.61940 -14.46887 -14.13883 -13.95738 -13.66373 -13.63669 -13.25151 -13.05477 -12.98081 -12.84195 -12.80274 -12.36726 -12.26000 -12.07855 -11.85261 -11.66231 -11.57980 -11.33080 -11.24068 -11.18091 -10.93051 -10.48714 -10.23383 -9.79092 -9.11824 -9.01362 -7.97176 -5.25937 -0.84836 -0.34272 0.81177 1.40556 1.45763 1.48808 1.55054 1.76953 2.25838 2.54619 3.05177 3.18016 3.36041 3.40983 3.51986 3.54586 3.65369 3.76687 3.78569 3.82893 4.02936 4.05666 4.13719 4.19189 4.30920 4.32308 4.43225 4.48864 4.54378 4.57902 4.64729 4.73657 4.75448 4.79098 4.87932 4.91306 4.93920 5.04847 5.09145 5.13175 5.18895 5.24918 5.29789 5.38068 5.45611 5.48340 5.59791 5.72829 6.25950 6.33326 6.92102 6.98359 7.32000 8.08509 8.31970 9.25940 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.001821 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.267715 B =15371.398863 C =16208.554897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.099 4.099 12 C -0.085 4.085 13 H 0.090 0.910 14 C -0.120 4.120 15 C 0.080 3.920 16 N -0.610 5.610 17 C 0.560 3.440 18 O -0.583 6.583 19 C -0.121 4.121 20 C -0.093 4.093 21 C -0.082 4.082 22 C -0.110 4.110 23 C 0.140 3.860 24 N -0.508 5.508 25 C 0.061 3.939 26 C -0.141 4.141 27 C -0.050 4.050 28 C -0.097 4.097 29 C 0.107 3.893 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.018 0.982 33 H 0.011 0.989 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.168 0.832 42 H 0.190 0.810 43 H 0.177 0.823 44 H 0.173 0.827 45 H 0.194 0.806 46 H 0.057 0.943 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -34.103 1.243 34.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.108 0.892 14 C -0.157 4.157 15 C -0.041 4.041 16 N -0.341 5.341 17 C 0.351 3.649 18 O -0.464 6.464 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.031 4.031 24 N -0.216 5.216 25 C -0.081 4.081 26 C -0.160 4.160 27 C -0.055 4.055 28 C -0.115 4.115 29 C -0.016 4.016 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.147 0.853 41 H 0.186 0.814 42 H 0.207 0.793 43 H 0.194 0.806 44 H 0.190 0.810 45 H 0.210 0.790 46 H 0.075 0.925 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.598 -34.627 1.529 34.758 hybrid contribution 0.403 2.469 0.285 2.518 sum 3.001 -32.158 1.814 32.349 Atomic orbital electron populations 1.69796 1.06465 1.26228 1.59264 1.25569 0.96488 1.01075 1.03543 0.85218 0.77269 0.79177 0.78142 1.21757 1.20663 1.20319 1.19595 0.91418 0.85654 1.41637 0.91103 1.42574 1.05705 1.01262 1.89445 1.20875 0.94503 0.85363 0.97203 1.21521 0.97497 0.91935 1.02806 1.22216 0.97766 0.94701 0.95829 0.89158 1.22833 0.97554 0.91823 1.03530 1.22932 0.89803 0.96935 0.94424 1.48473 1.31735 1.07902 1.46016 1.18452 0.80259 0.87949 0.78218 1.90769 1.37391 1.69448 1.48841 1.19907 1.00221 0.91380 1.01063 1.20981 0.97699 0.95334 0.97208 1.21166 0.97827 0.92602 0.98530 1.19455 0.97704 0.96113 0.97991 1.23673 0.94740 0.89336 0.95394 1.67441 1.05341 1.42432 1.06384 1.22676 0.96543 0.93395 0.95514 1.22299 0.99015 0.94830 0.99875 1.18442 0.96505 0.93908 0.96645 1.23225 0.97224 0.92978 0.98033 1.22363 1.00638 0.79871 0.98699 0.93885 0.79257 0.96423 0.97075 0.91778 0.90471 0.89304 0.86701 0.87830 0.87996 0.85273 0.81443 0.79347 0.80589 0.80966 0.78959 0.92490 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -38.53 5.60 -343.46 -1.92 -40.45 16 10 C 0.15 5.83 6.14 86.38 0.53 6.36 16 11 C -0.10 -2.81 4.84 30.60 0.15 -2.66 16 12 C -0.09 -1.79 3.04 -9.40 -0.03 -1.82 16 13 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.12 -1.47 6.42 31.80 0.20 -1.26 16 15 C 0.08 0.93 4.87 86.74 0.42 1.35 16 16 N -0.61 -13.36 3.33 -835.55 -2.78 -16.14 16 17 C 0.56 14.89 7.81 86.80 0.68 15.56 16 18 O -0.58 -20.79 16.56 -3.86 -0.06 -20.85 16 19 C -0.12 -2.45 5.87 -20.08 -0.12 -2.57 16 20 C -0.09 -1.75 9.49 22.29 0.21 -1.54 16 21 C -0.08 -1.08 9.77 22.27 0.22 -0.87 16 22 C -0.11 -1.54 5.75 -21.26 -0.12 -1.67 16 23 C 0.14 1.72 11.04 85.33 0.94 2.66 16 24 N -0.51 -7.53 10.29 -195.51 -2.01 -9.55 16 25 C 0.06 0.68 11.07 84.11 0.93 1.61 16 26 C -0.14 -1.33 9.88 22.41 0.22 -1.10 16 27 C -0.05 -0.68 5.74 -21.29 -0.12 -0.80 16 28 C -0.10 -1.35 8.40 22.79 0.19 -1.16 16 29 C 0.11 2.74 5.74 86.86 0.50 3.24 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.38 20.19 7.67 -92.71 -0.71 19.48 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.01 0.47 7.59 -2.39 -0.02 0.45 16 34 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 1.05 8.04 -2.39 -0.02 1.03 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.76 6.73 -2.38 -0.02 0.74 16 39 H 0.10 0.79 6.73 -2.39 -0.02 0.78 16 40 H 0.13 2.62 7.63 -2.91 -0.02 2.60 16 41 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 45 H 0.19 1.60 2.68 -10.74 -0.03 1.57 16 46 H 0.06 1.76 7.95 -2.39 -0.02 1.74 16 47 H 0.07 1.80 7.95 -2.39 -0.02 1.78 16 Total: -1.00 -79.91 383.01 1.91 -78.00 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.27 Total: 21.41 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 6.11 Total: -2.12 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.43 Total: -125.30 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.91 1.91 -78.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501635246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.932 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds