Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46645 * 299.99581 * 3 2 1 6 6 H 1.48499 * 109.47279 * 59.99468 * 3 2 1 7 7 C 1.38820 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00329 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99379 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99552 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47180 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43292 * 303.91884 * 11 10 9 13 13 C 1.54271 * 110.48528 * 66.45357 * 11 10 9 14 14 C 1.53882 * 106.59491 * 142.28723 * 13 11 10 15 15 C 1.54259 * 106.59837 * 0.02562 * 14 13 11 16 16 H 1.09003 * 110.48629 * 95.19871 * 15 14 13 17 17 N 1.46506 * 110.48682 * 217.70639 * 15 14 13 18 18 C 1.34771 * 119.99930 * 271.76122 * 17 15 14 19 19 O 1.21542 * 120.00536 * 0.02562 * 18 17 15 20 20 C 1.47896 * 119.99705 * 179.97438 * 18 17 15 21 21 C 1.40594 * 119.72667 * 359.97438 * 20 18 17 22 22 C 1.35854 * 120.94997 * 179.75661 * 21 20 18 23 23 C 1.40494 * 119.87568 * 0.51713 * 22 21 20 24 24 C 1.40491 * 121.83533 * 179.77280 * 23 22 21 25 25 N 1.31214 * 119.93834 * 179.72260 * 24 23 22 26 26 C 1.32554 * 122.80371 * 359.97438 * 25 24 23 27 27 C 1.36220 * 121.85015 * 0.02562 * 26 25 24 28 28 C 1.40759 * 118.67572 * 359.97438 * 27 26 25 29 29 C 1.38530 * 119.72872 * 179.97438 * 20 18 17 30 30 C 1.54891 * 104.31843 * 336.45296 * 15 14 13 31 31 H 0.96998 * 120.00149 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00425 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46966 * 60.00398 * 10 9 7 34 34 H 1.08996 * 109.47133 * 300.00567 * 10 9 7 35 35 H 1.08995 * 110.03340 * 23.00801 * 13 11 10 36 36 H 1.08996 * 110.03175 * 261.57325 * 13 11 10 37 37 H 1.08995 * 110.03108 * 240.71221 * 14 13 11 38 38 H 1.09000 * 110.02897 * 119.28651 * 14 13 11 39 39 H 0.97002 * 119.99772 * 91.75593 * 17 15 14 40 40 H 1.08001 * 119.53150 * 0.02562 * 21 20 18 41 41 H 1.07994 * 120.06262 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.02527 * 359.69819 * 24 23 22 43 43 H 1.08003 * 119.07447 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.66328 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.36564 * 0.02562 * 29 20 18 46 46 H 1.08993 * 110.75734 * 156.18964 * 30 15 14 47 47 H 1.09001 * 110.75416 * 279.56636 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3831 -4.7388 0.8472 13 6 0.2748 -4.8546 -1.3252 14 6 0.0924 -6.3386 -1.6892 15 6 0.7764 -7.1536 -0.5722 16 1 0.0484 -7.4538 0.1814 17 7 1.4470 -8.3294 -1.1326 18 6 0.7692 -9.4848 -1.2812 19 8 -0.3985 -9.5512 -0.9506 20 6 1.4460 -10.6716 -1.8474 21 6 2.7965 -10.5879 -2.2294 22 6 3.4440 -11.6640 -2.7476 23 6 2.7582 -12.8784 -2.9174 24 6 3.3859 -14.0152 -3.4536 25 7 2.7113 -15.1322 -3.5908 26 6 1.4379 -15.2496 -3.2419 27 6 0.7385 -14.2072 -2.7129 28 6 1.3946 -12.9747 -2.5348 29 6 0.7441 -11.8565 -1.9971 30 6 1.8134 -6.1762 0.0349 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.6847 -3.7145 0.8906 34 1 2.6848 -3.7145 -0.8894 35 1 0.8365 -4.3447 -2.1078 36 1 -0.6976 -4.3802 -1.1933 37 1 0.5654 -6.5487 -2.6484 38 1 -0.9686 -6.5844 -1.7339 39 1 2.3788 -8.2763 -1.3968 40 1 3.3282 -9.6561 -2.1050 41 1 4.4816 -11.5838 -3.0358 42 1 4.4226 -13.9695 -3.7528 43 1 0.9409 -16.1983 -3.3810 44 1 -0.2986 -14.3243 -2.4349 45 1 -0.2933 -11.9174 -1.7032 46 1 2.0574 -6.4589 1.0588 47 1 2.7121 -6.1353 -0.5805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507416692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = 17.560673 kcal Electronic energy + Delta-G solvation = -27352.451971 eV Core-core repulsion = 23499.445687 eV Total energy + Delta-G solvation = -3853.006283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.39691 -40.13516 -38.27817 -37.28426 -34.95755 -33.69517 -33.39738 -31.88796 -30.96755 -30.13438 -28.80054 -27.87808 -25.37597 -24.29573 -24.22993 -22.78846 -22.20338 -21.45520 -20.68403 -19.34853 -18.68781 -18.12509 -17.18101 -17.03073 -16.61720 -16.23077 -15.59719 -15.44545 -15.09730 -14.73943 -14.57049 -14.42484 -14.19812 -14.13683 -13.58774 -13.35559 -13.27969 -13.22654 -12.88516 -12.85203 -12.51088 -12.05421 -11.83378 -11.64245 -11.59096 -11.09326 -10.87581 -10.77359 -10.76219 -10.50053 -10.37997 -10.28079 -10.11128 -9.98403 -9.92169 -9.68248 -9.63762 -9.19064 -8.86962 -8.61982 -6.90675 -5.76077 -3.04406 -0.28411 0.17701 1.34114 2.08658 2.84215 2.99429 3.43052 3.48475 3.50885 3.58899 3.89450 3.98946 4.13339 4.23131 4.33414 4.47697 4.57247 4.61104 4.64171 4.74901 4.77977 5.01432 5.07807 5.15902 5.19090 5.39893 5.44614 5.50005 5.54379 5.56676 5.61767 5.67357 5.72304 5.77078 5.82759 5.88124 6.05763 6.08783 6.12868 6.19195 6.26478 6.32112 6.38680 6.56772 6.62083 6.80290 6.92908 7.24171 7.45137 7.70444 7.92717 8.43009 9.54234 10.13226 10.47800 11.46885 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034457 B = 0.001633 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.406840 B =17138.656009 C =17663.219782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.095 0.905 17 N -0.714 5.714 18 C 0.554 3.446 19 O -0.533 6.533 20 C -0.111 4.111 21 C -0.095 4.095 22 C -0.089 4.089 23 C -0.098 4.098 24 C 0.144 3.856 25 N -0.484 5.484 26 C 0.073 3.927 27 C -0.144 4.144 28 C -0.034 4.034 29 C -0.043 4.043 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.166 0.834 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.072 0.928 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -30.603 -6.312 31.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.114 4.114 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.113 0.887 17 N -0.365 5.365 18 C 0.341 3.659 19 O -0.410 6.410 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.101 4.101 24 C -0.028 4.028 25 N -0.192 5.192 26 C -0.070 4.070 27 C -0.164 4.164 28 C -0.039 4.039 29 C -0.062 4.062 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.183 0.817 43 H 0.173 0.827 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.091 0.909 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.362 -31.327 -6.399 32.420 hybrid contribution 0.138 1.794 0.195 1.810 sum 5.500 -29.533 -6.203 30.674 Atomic orbital electron populations 1.69669 1.05095 1.25494 1.57901 1.24741 0.95518 0.97672 1.03130 0.86128 0.78757 0.84193 0.77180 1.20595 1.21903 1.21886 1.19284 0.91046 0.84244 1.42457 0.91193 1.42354 1.05919 0.99929 1.89402 1.20668 0.93007 0.85329 0.97618 1.22114 0.97561 0.93576 0.98159 0.90467 1.22101 1.01028 0.94276 0.97595 1.22559 1.00845 0.95705 0.98069 1.22008 0.95152 0.83599 0.95753 0.88670 1.46043 1.15158 1.10902 1.64383 1.18240 0.86358 0.82869 0.78429 1.90793 1.15995 1.84331 1.49924 1.20081 0.94624 0.94617 1.02265 1.20998 0.93295 0.99351 0.97685 1.20903 1.00234 0.91310 0.98420 1.19179 0.94068 0.96227 1.00589 1.23287 0.99706 0.86822 0.92995 1.67403 1.09071 1.26907 1.15777 1.22231 0.90037 0.99050 0.95669 1.22024 1.01495 0.92676 1.00161 1.18151 0.93262 0.94442 0.98080 1.21458 1.00365 0.90208 0.94176 1.22769 0.97687 0.94569 1.00926 0.93588 0.78217 0.96489 0.96378 0.91063 0.91417 0.91805 0.91576 0.76486 0.84970 0.84145 0.81668 0.82717 0.83998 0.83506 0.90945 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.34 5.44 -59.91 -0.33 -18.66 16 10 C 0.16 3.13 5.58 -4.04 -0.02 3.11 16 11 C -0.09 -1.45 2.93 -88.89 -0.26 -1.71 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 13 C -0.11 -1.69 6.05 -25.61 -0.15 -1.85 16 14 C -0.13 -1.70 6.54 -25.61 -0.17 -1.86 16 15 C 0.14 1.61 3.18 -66.27 -0.21 1.40 16 16 H 0.10 1.24 7.61 -51.93 -0.40 0.85 16 17 N -0.71 -6.88 5.05 -53.12 -0.27 -7.15 16 18 C 0.55 6.26 7.77 -12.31 -0.10 6.16 16 19 O -0.53 -7.95 15.98 5.33 0.09 -7.87 16 20 C -0.11 -1.00 5.87 -104.95 -0.62 -1.62 16 21 C -0.09 -0.61 9.44 -39.55 -0.37 -0.98 16 22 C -0.09 -0.50 9.77 -39.59 -0.39 -0.89 16 23 C -0.10 -0.72 5.75 -106.78 -0.61 -1.33 16 24 C 0.14 0.97 11.04 -16.97 -0.19 0.78 16 25 N -0.48 -4.04 10.29 -13.14 -0.14 -4.18 16 26 C 0.07 0.51 11.07 -17.97 -0.20 0.31 16 27 C -0.14 -0.99 9.88 -39.36 -0.39 -1.37 16 28 C -0.03 -0.28 5.74 -106.83 -0.61 -0.89 16 29 C -0.04 -0.38 9.38 -38.78 -0.36 -0.75 16 30 C -0.12 -1.40 5.95 -24.67 -0.15 -1.54 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.38 10.14 7.52 -40.82 -0.31 9.83 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 35 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.40 2.73 6.53 -40.82 -0.27 2.46 16 40 H 0.13 0.54 6.34 -52.49 -0.33 0.21 16 41 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.15 1.28 7.62 -52.49 -0.40 0.89 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.77 7.94 -51.93 -0.41 0.35 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -34.58 388.61 -10.84 -45.42 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.70 Total: 7.13 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -5.05 Total: -10.39 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.01 Total: -57.50 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.58 -10.84 -45.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507416692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.978 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds