Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46645 * 299.99581 * 3 2 1 6 6 H 1.48499 * 109.47279 * 59.99468 * 3 2 1 7 7 C 1.38820 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00329 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99379 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99552 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47180 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43292 * 303.91884 * 11 10 9 13 13 C 1.54271 * 110.48528 * 66.45357 * 11 10 9 14 14 C 1.53882 * 106.59491 * 142.28723 * 13 11 10 15 15 C 1.54259 * 106.59837 * 0.02562 * 14 13 11 16 16 H 1.09003 * 110.48629 * 95.19871 * 15 14 13 17 17 N 1.46506 * 110.48682 * 217.70639 * 15 14 13 18 18 C 1.34771 * 119.99930 * 271.76122 * 17 15 14 19 19 O 1.21542 * 120.00536 * 0.02562 * 18 17 15 20 20 C 1.47896 * 119.99705 * 179.97438 * 18 17 15 21 21 C 1.40594 * 119.72667 * 359.97438 * 20 18 17 22 22 C 1.35854 * 120.94997 * 179.75661 * 21 20 18 23 23 C 1.40494 * 119.87568 * 0.51713 * 22 21 20 24 24 C 1.40491 * 121.83533 * 179.77280 * 23 22 21 25 25 N 1.31214 * 119.93834 * 179.72260 * 24 23 22 26 26 C 1.32554 * 122.80371 * 359.97438 * 25 24 23 27 27 C 1.36220 * 121.85015 * 0.02562 * 26 25 24 28 28 C 1.40759 * 118.67572 * 359.97438 * 27 26 25 29 29 C 1.38530 * 119.72872 * 179.97438 * 20 18 17 30 30 C 1.54891 * 104.31843 * 336.45296 * 15 14 13 31 31 H 0.96998 * 120.00149 * 0.02562 * 1 2 3 32 32 H 0.96994 * 120.00425 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46966 * 60.00398 * 10 9 7 34 34 H 1.08996 * 109.47133 * 300.00567 * 10 9 7 35 35 H 1.08995 * 110.03340 * 23.00801 * 13 11 10 36 36 H 1.08996 * 110.03175 * 261.57325 * 13 11 10 37 37 H 1.08995 * 110.03108 * 240.71221 * 14 13 11 38 38 H 1.09000 * 110.02897 * 119.28651 * 14 13 11 39 39 H 0.97002 * 119.99772 * 91.75593 * 17 15 14 40 40 H 1.08001 * 119.53150 * 0.02562 * 21 20 18 41 41 H 1.07994 * 120.06262 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.02527 * 359.69819 * 24 23 22 43 43 H 1.08003 * 119.07447 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.66328 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.36564 * 0.02562 * 29 20 18 46 46 H 1.08993 * 110.75734 * 156.18964 * 30 15 14 47 47 H 1.09001 * 110.75416 * 279.56636 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3831 -4.7388 0.8472 13 6 0.2748 -4.8546 -1.3252 14 6 0.0924 -6.3386 -1.6892 15 6 0.7764 -7.1536 -0.5722 16 1 0.0484 -7.4538 0.1814 17 7 1.4470 -8.3294 -1.1326 18 6 0.7692 -9.4848 -1.2812 19 8 -0.3985 -9.5512 -0.9506 20 6 1.4460 -10.6716 -1.8474 21 6 2.7965 -10.5879 -2.2294 22 6 3.4440 -11.6640 -2.7476 23 6 2.7582 -12.8784 -2.9174 24 6 3.3859 -14.0152 -3.4536 25 7 2.7113 -15.1322 -3.5908 26 6 1.4379 -15.2496 -3.2419 27 6 0.7385 -14.2072 -2.7129 28 6 1.3946 -12.9747 -2.5348 29 6 0.7441 -11.8565 -1.9971 30 6 1.8134 -6.1762 0.0349 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.6847 -3.7145 0.8906 34 1 2.6848 -3.7145 -0.8894 35 1 0.8365 -4.3447 -2.1078 36 1 -0.6976 -4.3802 -1.1933 37 1 0.5654 -6.5487 -2.6484 38 1 -0.9686 -6.5844 -1.7339 39 1 2.3788 -8.2763 -1.3968 40 1 3.3282 -9.6561 -2.1050 41 1 4.4816 -11.5838 -3.0358 42 1 4.4226 -13.9695 -3.7528 43 1 0.9409 -16.1983 -3.3810 44 1 -0.2986 -14.3243 -2.4349 45 1 -0.2933 -11.9174 -1.7032 46 1 2.0574 -6.4589 1.0588 47 1 2.7121 -6.1353 -0.5805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507416692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = -4.130480 kcal Electronic energy + Delta-G solvation = -27353.392570 eV Core-core repulsion = 23499.445687 eV Total energy + Delta-G solvation = -3853.946882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.96487 -40.97889 -39.33982 -37.95063 -36.49145 -34.96166 -33.99999 -33.09773 -32.23588 -30.63791 -30.13563 -29.07216 -26.49954 -25.55873 -24.79913 -23.92606 -23.32369 -22.24243 -21.70899 -20.57280 -19.45445 -19.04846 -18.65790 -17.79139 -17.33350 -17.13550 -16.65644 -16.55051 -15.93940 -15.92303 -15.62664 -15.18072 -15.14053 -15.00897 -14.71248 -14.61796 -14.52897 -14.28741 -13.83749 -13.49012 -13.36037 -13.27592 -13.10797 -12.87718 -12.80143 -12.55700 -12.11359 -12.10780 -12.07288 -11.78220 -11.71423 -11.50191 -11.32507 -11.26705 -11.17298 -10.91549 -10.52415 -10.31454 -10.03223 -9.12431 -8.96577 -7.93647 -5.21865 -0.83896 -0.34924 0.80404 1.45817 1.48190 1.48904 1.59012 2.01156 2.30537 2.57467 3.05129 3.40176 3.43821 3.49144 3.52872 3.59478 3.65973 3.74487 3.81860 3.89078 4.00191 4.07907 4.18574 4.27560 4.38523 4.49510 4.50887 4.57629 4.60854 4.66735 4.67420 4.75142 4.79608 4.92364 4.92832 5.03038 5.03328 5.12576 5.16357 5.19776 5.23301 5.26363 5.37937 5.49063 5.53668 5.56476 5.61625 5.71297 6.28999 6.46898 6.95751 7.11891 7.35159 8.13450 8.35315 9.30285 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034457 B = 0.001633 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.406840 B =17138.656009 C =17663.219782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.091 4.091 12 H 0.065 0.935 13 C -0.107 4.107 14 C -0.124 4.124 15 C 0.147 3.853 16 H 0.080 0.920 17 N -0.699 5.699 18 C 0.553 3.447 19 O -0.578 6.578 20 C -0.121 4.121 21 C -0.099 4.099 22 C -0.076 4.076 23 C -0.110 4.110 24 C 0.145 3.855 25 N -0.510 5.510 26 C 0.065 3.935 27 C -0.153 4.153 28 C -0.050 4.050 29 C -0.058 4.058 30 C -0.105 4.105 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.022 0.978 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.417 0.583 40 H 0.160 0.840 41 H 0.179 0.821 42 H 0.198 0.802 43 H 0.174 0.826 44 H 0.156 0.844 45 H 0.136 0.864 46 H 0.087 0.913 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -31.737 -6.948 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.110 4.110 12 H 0.083 0.917 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.042 3.958 16 H 0.098 0.902 17 N -0.351 5.351 18 C 0.342 3.658 19 O -0.458 6.458 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.095 4.095 23 C -0.112 4.112 24 C -0.026 4.026 25 N -0.218 5.218 26 C -0.077 4.077 27 C -0.173 4.173 28 C -0.055 4.055 29 C -0.077 4.077 30 C -0.143 4.143 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.256 0.744 40 H 0.178 0.822 41 H 0.196 0.804 42 H 0.214 0.786 43 H 0.191 0.809 44 H 0.174 0.826 45 H 0.154 0.846 46 H 0.105 0.895 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.604 -32.496 -7.043 34.346 hybrid contribution -0.821 2.057 0.371 2.246 sum 7.783 -30.439 -6.672 32.119 Atomic orbital electron populations 1.69831 1.06683 1.25900 1.59796 1.25578 0.96374 1.01157 1.03930 0.85073 0.78328 0.79808 0.76552 1.18825 1.22180 1.22198 1.19718 0.91598 0.85429 1.40737 0.90439 1.42602 1.05670 1.01295 1.89299 1.20855 0.93612 0.84375 0.97788 1.22001 0.96975 0.94323 0.97694 0.91663 1.21999 0.99672 0.95668 0.97229 1.22456 1.00621 0.94078 0.99115 1.21740 0.95015 0.84112 0.94928 0.90209 1.45834 1.15813 1.09773 1.63647 1.18626 0.85872 0.83664 0.77677 1.90773 1.18053 1.85081 1.51936 1.20017 0.95911 0.93442 1.03117 1.21249 0.92069 1.00916 0.97487 1.21313 1.01665 0.89976 0.96543 1.19467 0.93794 0.97327 1.00620 1.23821 1.00877 0.86069 0.91878 1.67453 1.09722 1.27864 1.16751 1.22574 0.89977 0.99869 0.95291 1.22224 1.02317 0.92415 1.00306 1.18337 0.94180 0.94543 0.98481 1.21447 1.00201 0.90925 0.95160 1.22667 0.97707 0.91559 1.02380 0.94127 0.79545 0.96029 0.95607 0.92274 0.93545 0.90597 0.92624 0.74436 0.82235 0.80412 0.78572 0.80891 0.82646 0.84628 0.89464 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.50 9.99 84.04 0.84 -12.66 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -37.58 5.44 -343.45 -1.87 -39.44 16 10 C 0.16 6.04 5.58 86.38 0.48 6.52 16 11 C -0.09 -2.71 2.93 -9.68 -0.03 -2.74 16 12 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 13 C -0.11 -3.26 6.05 31.32 0.19 -3.07 16 14 C -0.12 -3.09 6.54 31.32 0.20 -2.88 16 15 C 0.15 3.20 3.18 46.06 0.15 3.35 16 16 H 0.08 2.05 7.61 -2.39 -0.02 2.04 16 17 N -0.70 -11.99 5.05 -440.27 -2.22 -14.21 16 18 C 0.55 12.09 7.77 86.80 0.67 12.76 16 19 O -0.58 -17.64 15.98 -3.85 -0.06 -17.71 16 20 C -0.12 -2.03 5.87 -20.08 -0.12 -2.15 16 21 C -0.10 -0.97 9.44 22.29 0.21 -0.76 16 22 C -0.08 -0.59 9.77 22.27 0.22 -0.37 16 23 C -0.11 -1.37 5.75 -21.26 -0.12 -1.49 16 24 C 0.14 1.62 11.04 85.33 0.94 2.56 16 25 N -0.51 -7.77 10.29 -195.50 -2.01 -9.78 16 26 C 0.06 0.86 11.07 84.11 0.93 1.79 16 27 C -0.15 -2.06 9.88 22.42 0.22 -1.83 16 28 C -0.05 -0.79 5.74 -21.29 -0.12 -0.92 16 29 C -0.06 -1.04 9.38 22.79 0.21 -0.83 16 30 C -0.10 -2.15 5.95 31.93 0.19 -1.96 16 31 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.37 20.20 7.52 -92.71 -0.70 19.50 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 35 H 0.06 1.93 7.77 -2.39 -0.02 1.91 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.71 8.04 -2.39 -0.02 1.70 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.42 4.19 6.53 -92.71 -0.61 3.59 16 40 H 0.16 0.59 6.34 -2.91 -0.02 0.57 16 41 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.14 2.59 7.62 -2.91 -0.02 2.57 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.10 1.60 7.94 -2.39 -0.02 1.58 16 Total: -1.00 -76.57 388.61 1.38 -75.18 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.30 Total: 26.24 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.54 Total: -8.75 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.82 Total: -123.05 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.06 Total: -17.71 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.57 1.38 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507416692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.054 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds