Wall clock time and date at job start Sat Apr 11 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21603 * 120.00295 * 0.02562 * 14 13 12 16 16 C 1.47435 * 120.00155 * 179.97438 * 14 13 12 17 17 C 1.38745 * 120.32920 * 359.72685 * 16 14 13 18 18 C 1.38870 * 120.72713 * 179.78076 * 17 16 14 19 19 C 1.36357 * 121.05714 * 0.49872 * 18 17 16 20 20 C 1.40440 * 120.07934 * 359.74065 * 19 18 17 21 21 C 1.40801 * 121.25694 * 179.97438 * 20 19 18 22 22 C 1.36631 * 118.16012 * 180.02562 * 21 20 19 23 23 C 1.39234 * 119.90265 * 0.02562 * 22 21 20 24 24 N 1.31234 * 121.69841 * 0.02562 * 23 22 21 25 25 C 1.33349 * 121.35348 * 359.95990 * 24 23 22 26 26 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 27 27 C 1.53000 * 117.49921 * 3.23472 * 26 9 7 28 28 C 1.52998 * 117.49703 * 294.57074 * 26 9 7 29 29 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 30 30 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 31 31 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 32 32 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 33 33 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 34 34 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 35 35 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 36 36 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 37 37 H 1.07992 * 119.63689 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.47462 * 180.28139 * 18 17 16 39 39 H 1.07997 * 119.95965 * 179.76553 * 19 18 17 40 40 H 1.08007 * 120.92130 * 0.02562 * 21 20 19 41 41 H 1.07992 * 120.05056 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.15220 * 179.97438 * 23 22 21 43 43 H 1.09004 * 115.54877 * 148.90350 * 26 9 7 44 44 H 1.08998 * 117.50153 * 359.97438 * 27 26 9 45 45 H 1.08995 * 117.49708 * 145.02504 * 27 26 9 46 46 H 1.08995 * 117.49988 * 214.98174 * 28 26 9 47 47 H 1.08997 * 117.49880 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9816 -2.3873 6.4646 16 6 0.9388 -2.7344 7.7439 17 6 2.3120 -2.9330 7.7549 18 6 2.9954 -3.0983 8.9525 19 6 2.3370 -3.0803 10.1464 20 6 0.9464 -2.8869 10.1806 21 6 0.2416 -2.8644 11.3993 22 6 -1.1105 -2.6723 11.3588 23 6 -1.7516 -2.5063 10.1340 24 7 -1.0902 -2.5291 9.0008 25 6 0.2303 -2.7122 8.9717 26 6 1.7039 -3.6309 -0.1884 27 6 2.7655 -3.6431 -1.2902 28 6 1.2873 -3.8149 -1.6490 29 1 -0.4849 0.8379 0.0599 30 1 -0.0520 -1.3115 1.5493 31 1 -0.2968 -3.0711 1.4393 32 1 1.6864 -3.4373 2.8821 33 1 1.9312 -1.6776 2.9921 34 1 -0.3060 -1.4305 4.0317 35 1 -0.5514 -3.1900 3.9221 36 1 1.8636 -2.7123 5.3067 37 1 2.8557 -2.9562 6.8222 38 1 4.0650 -3.2471 8.9378 39 1 2.8856 -3.2144 11.0669 40 1 0.7556 -2.9953 12.3401 41 1 -1.6813 -2.6501 12.2752 42 1 -2.8209 -2.3557 10.1161 43 1 1.6465 -4.5015 0.4649 44 1 3.2380 -2.6944 -1.5444 45 1 3.4061 -4.5220 -1.3619 46 1 0.9562 -4.8067 -1.9568 47 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566591598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:26 Heat of formation + Delta-G solvation = 73.918710 kcal Electronic energy + Delta-G solvation = -27948.674481 eV Core-core repulsion = 24098.112066 eV Total energy + Delta-G solvation = -3850.562416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.18376 -39.16826 -37.21351 -37.07828 -35.17704 -33.68735 -33.52027 -31.69693 -30.80213 -30.48871 -29.13561 -25.61222 -24.77494 -23.92076 -23.68061 -22.67552 -21.42064 -20.95281 -20.26490 -19.60261 -18.50488 -17.87622 -17.09031 -16.36489 -16.14413 -15.62358 -15.37348 -15.19011 -14.96646 -14.64534 -14.48417 -14.21680 -14.03709 -13.89270 -13.34328 -13.26904 -13.19608 -12.59441 -12.41995 -12.15430 -12.03499 -11.89557 -11.67671 -11.44766 -11.00457 -10.80246 -10.74169 -10.71019 -10.65360 -10.17124 -10.08996 -9.90363 -9.64616 -9.54367 -9.28467 -9.19782 -9.10959 -8.78460 -8.50710 -8.46718 -6.57577 -5.78611 -3.39626 -0.11439 0.52317 1.50458 2.50538 3.26470 3.30621 3.34835 3.43442 3.44876 3.97038 4.03196 4.26460 4.41002 4.44246 4.51188 4.58584 4.71471 4.80959 4.93695 4.97757 5.15174 5.19902 5.33409 5.35433 5.56374 5.60989 5.71132 5.71573 5.81253 5.87175 5.92194 6.00677 6.05864 6.13930 6.17469 6.28769 6.43698 6.45109 6.47994 6.50429 6.67271 6.72303 6.84365 7.04495 7.13211 7.23423 7.69022 7.71206 7.80328 7.83750 8.46710 8.49073 9.14871 9.78187 10.33815 11.16866 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.002254 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.265341 B =12416.664907 C =12716.463601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.010 3.990 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.552 5.552 10 C 0.149 3.851 11 C -0.145 4.145 12 C 0.124 3.876 13 N -0.726 5.726 14 C 0.546 3.454 15 O -0.501 6.501 16 C -0.102 4.102 17 C -0.065 4.065 18 C -0.124 4.124 19 C -0.075 4.075 20 C -0.112 4.112 21 C -0.060 4.060 22 C -0.175 4.175 23 C 0.130 3.870 24 N -0.435 5.435 25 C 0.160 3.840 26 C 0.121 3.879 27 C -0.197 4.197 28 C -0.223 4.223 29 H 0.255 0.745 30 H 0.103 0.897 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -7.927 23.264 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.190 4.190 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.185 4.185 12 C 0.000 4.000 13 N -0.378 5.378 14 C 0.331 3.669 15 O -0.375 6.375 16 C -0.106 4.106 17 C -0.086 4.086 18 C -0.142 4.142 19 C -0.094 4.094 20 C -0.114 4.114 21 C -0.086 4.086 22 C -0.195 4.195 23 C -0.042 4.042 24 N -0.142 5.142 25 C 0.037 3.963 26 C 0.012 3.988 27 C -0.235 4.235 28 C -0.264 4.264 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.923 -7.528 22.304 23.721 hybrid contribution 1.415 0.688 0.788 1.760 sum 4.338 -6.840 23.093 24.472 Atomic orbital electron populations 1.70046 1.05484 1.25993 1.50841 1.25131 0.94974 0.98728 1.00177 0.86373 0.79748 0.84148 0.77412 1.20084 1.21659 1.21358 1.19094 0.94376 0.85476 1.39747 0.91633 1.43423 1.49129 1.01392 1.32889 1.20858 0.90443 1.03361 0.83115 1.22435 0.98861 1.01184 0.96017 1.21438 0.95468 1.01847 0.81209 1.46110 1.11379 1.74033 1.06323 1.17929 0.87385 0.78433 0.83132 1.90853 1.13284 1.46598 1.86778 1.20049 0.93371 1.04294 0.92906 1.21512 0.92818 0.95039 0.99186 1.20858 1.00710 1.00697 0.91917 1.21152 0.92502 0.96973 0.98807 1.18843 0.94994 1.03481 0.94058 1.21452 0.94476 0.95642 0.97070 1.21972 0.95528 1.02035 0.99992 1.23217 1.00863 0.92816 0.87339 1.68354 1.06956 1.10053 1.28825 1.18645 0.89880 0.96443 0.91307 1.21220 1.00282 0.90256 0.87049 1.23033 0.91927 1.01781 1.06788 1.23366 0.97328 1.00624 1.05050 0.93526 0.87977 0.95341 0.93217 0.91589 0.91390 0.91876 0.77088 0.84566 0.84708 0.84891 0.84301 0.84451 0.82256 0.89634 0.88518 0.90838 0.91273 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 11.33 55.49 0.63 -24.26 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 3 Si 0.89 21.20 29.61 -169.99 -5.03 16.17 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.76 8.63 -15.05 -0.13 -6.89 16 8 H 0.07 1.73 6.55 -52.49 -0.34 1.39 16 9 N -0.55 -13.27 2.78 -165.66 -0.46 -13.73 16 10 C 0.15 3.34 5.34 -4.05 -0.02 3.32 16 11 C -0.14 -2.65 5.65 -26.73 -0.15 -2.80 16 12 C 0.12 2.13 5.67 -4.04 -0.02 2.10 16 13 N -0.73 -10.79 5.51 -61.38 -0.34 -11.13 16 14 C 0.55 9.07 7.76 -12.52 -0.10 8.98 16 15 O -0.50 -10.26 15.19 5.27 0.08 -10.18 16 16 C -0.10 -1.40 5.91 -104.61 -0.62 -2.02 16 17 C -0.06 -0.64 9.52 -39.16 -0.37 -1.01 16 18 C -0.12 -0.95 9.93 -40.03 -0.40 -1.35 16 19 C -0.08 -0.58 9.75 -39.43 -0.38 -0.97 16 20 C -0.11 -1.15 5.74 -106.82 -0.61 -1.76 16 21 C -0.06 -0.47 9.89 -39.19 -0.39 -0.86 16 22 C -0.18 -1.36 10.03 -39.79 -0.40 -1.76 16 23 C 0.13 1.40 11.15 -17.44 -0.19 1.20 16 24 N -0.44 -6.56 8.44 -10.76 -0.09 -6.65 16 25 C 0.16 2.23 6.61 -84.58 -0.56 1.67 16 26 C 0.12 2.56 6.56 -67.93 -0.45 2.11 16 27 C -0.20 -3.86 9.80 -26.69 -0.26 -4.12 16 28 C -0.22 -4.56 10.36 -26.69 -0.28 -4.83 16 29 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 30 H 0.10 2.63 5.36 -51.93 -0.28 2.35 16 31 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.39 4.68 6.50 -40.82 -0.27 4.42 16 37 H 0.14 1.03 6.37 -52.49 -0.33 0.70 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 41 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -33.95 390.38 -11.35 -45.30 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.60 Total: 7.39 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -5.42 Total: -8.80 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.26 Total: -55.76 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.95 -11.35 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566591598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.217 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds