Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21603 * 120.00295 * 0.02562 * 14 13 12 16 16 C 1.47435 * 120.00155 * 179.97438 * 14 13 12 17 17 C 1.38745 * 120.32920 * 359.72685 * 16 14 13 18 18 C 1.38870 * 120.72713 * 179.78076 * 17 16 14 19 19 C 1.36357 * 121.05714 * 0.49872 * 18 17 16 20 20 C 1.40440 * 120.07934 * 359.74065 * 19 18 17 21 21 C 1.40801 * 121.25694 * 179.97438 * 20 19 18 22 22 C 1.36631 * 118.16012 * 180.02562 * 21 20 19 23 23 C 1.39234 * 119.90265 * 0.02562 * 22 21 20 24 24 N 1.31234 * 121.69841 * 0.02562 * 23 22 21 25 25 C 1.33349 * 121.35348 * 359.95990 * 24 23 22 26 26 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 27 27 C 1.53000 * 117.49921 * 3.23472 * 26 9 7 28 28 C 1.52998 * 117.49703 * 294.57074 * 26 9 7 29 29 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 30 30 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 31 31 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 32 32 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 33 33 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 34 34 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 35 35 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 36 36 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 37 37 H 1.07992 * 119.63689 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.47462 * 180.28139 * 18 17 16 39 39 H 1.07997 * 119.95965 * 179.76553 * 19 18 17 40 40 H 1.08007 * 120.92130 * 0.02562 * 21 20 19 41 41 H 1.07992 * 120.05056 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.15220 * 179.97438 * 23 22 21 43 43 H 1.09004 * 115.54877 * 148.90350 * 26 9 7 44 44 H 1.08998 * 117.50153 * 359.97438 * 27 26 9 45 45 H 1.08995 * 117.49708 * 145.02504 * 27 26 9 46 46 H 1.08995 * 117.49988 * 214.98174 * 28 26 9 47 47 H 1.08997 * 117.49880 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9816 -2.3873 6.4646 16 6 0.9388 -2.7344 7.7439 17 6 2.3120 -2.9330 7.7549 18 6 2.9954 -3.0983 8.9525 19 6 2.3370 -3.0803 10.1464 20 6 0.9464 -2.8869 10.1806 21 6 0.2416 -2.8644 11.3993 22 6 -1.1105 -2.6723 11.3588 23 6 -1.7516 -2.5063 10.1340 24 7 -1.0902 -2.5291 9.0008 25 6 0.2303 -2.7122 8.9717 26 6 1.7039 -3.6309 -0.1884 27 6 2.7655 -3.6431 -1.2902 28 6 1.2873 -3.8149 -1.6490 29 1 -0.4849 0.8379 0.0599 30 1 -0.0520 -1.3115 1.5493 31 1 -0.2968 -3.0711 1.4393 32 1 1.6864 -3.4373 2.8821 33 1 1.9312 -1.6776 2.9921 34 1 -0.3060 -1.4305 4.0317 35 1 -0.5514 -3.1900 3.9221 36 1 1.8636 -2.7123 5.3067 37 1 2.8557 -2.9562 6.8222 38 1 4.0650 -3.2471 8.9378 39 1 2.8856 -3.2144 11.0669 40 1 0.7556 -2.9953 12.3401 41 1 -1.6813 -2.6501 12.2752 42 1 -2.8209 -2.3557 10.1161 43 1 1.6465 -4.5015 0.4649 44 1 3.2380 -2.6944 -1.5444 45 1 3.4061 -4.5220 -1.3619 46 1 0.9562 -4.8067 -1.9568 47 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566591598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = 53.163260 kcal Electronic energy + Delta-G solvation = -27949.574505 eV Core-core repulsion = 24098.112066 eV Total energy + Delta-G solvation = -3851.462439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.96378 -40.34800 -38.85141 -37.91911 -36.64362 -35.25780 -34.43798 -33.35371 -31.72049 -31.45393 -30.55810 -27.28026 -25.80024 -25.21111 -24.41462 -23.84042 -23.02644 -22.49629 -21.59477 -21.18770 -19.22409 -18.81069 -18.26330 -17.82051 -17.31073 -17.02597 -16.71102 -16.56534 -16.28465 -15.80185 -15.68522 -15.40229 -15.07320 -14.87874 -14.74882 -14.43505 -14.02391 -13.93045 -13.82065 -13.65000 -13.23971 -13.06235 -12.81525 -12.70724 -12.60611 -12.45057 -12.35110 -12.23172 -11.99764 -11.82480 -11.49449 -11.44231 -11.29601 -11.11219 -10.88208 -10.47197 -10.13315 -10.11872 -9.80802 -9.28068 -8.53856 -7.79094 -5.44609 -0.83427 -0.16961 0.75775 1.42703 1.46828 1.55839 1.78075 2.12219 2.22969 2.49523 3.15357 3.16509 3.33851 3.41539 3.49846 3.56612 3.76215 3.86312 3.96075 4.05451 4.16919 4.19100 4.25355 4.32710 4.43378 4.46765 4.51261 4.56199 4.59815 4.68966 4.75747 4.91740 4.92868 4.95446 4.99492 5.08203 5.09920 5.12664 5.21308 5.36226 5.37033 5.43793 5.46783 5.55516 5.56974 5.69358 5.84361 5.85694 6.45332 6.56925 7.07838 7.15135 7.28628 7.86352 8.35868 9.11584 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.002254 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.265341 B =12416.664907 C =12716.463601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.041 4.041 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.568 5.568 10 C 0.148 3.852 11 C -0.119 4.119 12 C 0.137 3.863 13 N -0.714 5.714 14 C 0.543 3.457 15 O -0.555 6.555 16 C -0.153 4.153 17 C -0.046 4.046 18 C -0.130 4.130 19 C -0.054 4.054 20 C -0.131 4.131 21 C -0.049 4.049 22 C -0.176 4.176 23 C 0.117 3.883 24 N -0.503 5.503 25 C 0.129 3.871 26 C 0.101 3.899 27 C -0.179 4.179 28 C -0.224 4.224 29 H 0.249 0.751 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.175 0.825 42 H 0.169 0.831 43 H 0.114 0.886 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 -9.741 26.315 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.238 4.238 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.286 5.286 10 C 0.022 3.978 11 C -0.159 4.159 12 C 0.013 3.987 13 N -0.368 5.368 14 C 0.331 3.669 15 O -0.433 6.433 16 C -0.157 4.157 17 C -0.067 4.067 18 C -0.148 4.148 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.075 4.075 22 C -0.196 4.196 23 C -0.055 4.055 24 N -0.211 5.211 25 C 0.007 3.993 26 C -0.007 4.007 27 C -0.217 4.217 28 C -0.265 4.265 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.248 0.752 37 H 0.173 0.827 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.202 0.798 41 H 0.193 0.807 42 H 0.187 0.813 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.578 -9.367 25.357 27.821 hybrid contribution 0.310 1.166 -0.089 1.210 sum 6.888 -8.201 25.268 27.444 Atomic orbital electron populations 1.70184 1.06820 1.26091 1.52892 1.25792 0.95542 1.01473 1.00972 0.85468 0.79276 0.80684 0.76623 1.18681 1.22316 1.21835 1.19280 0.94278 0.86449 1.38335 0.91777 1.43622 1.49132 1.02051 1.33752 1.20740 0.90743 1.01426 0.84913 1.22071 0.98004 1.01932 0.93901 1.21083 0.95219 1.00177 0.82260 1.45888 1.12054 1.73705 1.05173 1.18548 0.87038 0.76979 0.84383 1.90805 1.15666 1.49255 1.87607 1.19907 0.94977 1.09466 0.91307 1.21845 0.91216 0.92276 1.01320 1.21301 1.02484 1.00141 0.90854 1.21708 0.91341 0.93529 1.00666 1.19199 0.96434 1.03990 0.93678 1.22003 0.94441 0.93239 0.97766 1.22298 0.96180 1.01179 0.99903 1.23635 1.01619 0.92211 0.87991 1.68259 1.08516 1.13020 1.31287 1.18987 0.90002 0.97550 0.92810 1.21561 1.01590 0.89789 0.87717 1.23043 0.91588 1.02363 1.04679 1.23286 0.98162 1.00788 1.04227 0.94199 0.91543 0.95338 0.90882 0.92550 0.94185 0.92433 0.75163 0.82749 0.80810 0.80509 0.79840 0.80743 0.81349 0.86820 0.90675 0.86897 0.88130 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 11.33 21.65 0.25 -53.81 16 2 C -0.04 -2.25 4.96 84.86 0.42 -1.83 16 3 Si 0.95 44.67 29.61 68.60 2.03 46.70 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.25 -13.45 8.63 84.03 0.73 -12.73 16 8 H 0.06 3.39 6.55 -2.91 -0.02 3.37 16 9 N -0.57 -27.51 2.78 -678.03 -1.88 -29.40 16 10 C 0.15 6.86 5.34 86.38 0.46 7.32 16 11 C -0.12 -4.39 5.65 30.59 0.17 -4.22 16 12 C 0.14 4.97 5.67 86.38 0.49 5.46 16 13 N -0.71 -22.00 5.51 -466.38 -2.57 -24.57 16 14 C 0.54 19.26 7.76 86.67 0.67 19.93 16 15 O -0.56 -24.94 15.19 -4.04 -0.06 -25.00 16 16 C -0.15 -4.31 5.91 -19.86 -0.12 -4.43 16 17 C -0.05 -0.83 9.52 22.54 0.21 -0.61 16 18 C -0.13 -1.48 9.93 21.98 0.22 -1.26 16 19 C -0.05 -0.60 9.75 22.37 0.22 -0.38 16 20 C -0.13 -2.41 5.74 -21.29 -0.12 -2.53 16 21 C -0.05 -0.60 9.89 22.52 0.22 -0.37 16 22 C -0.18 -2.39 10.03 22.13 0.22 -2.17 16 23 C 0.12 2.61 11.15 85.02 0.95 3.56 16 24 N -0.50 -16.28 8.44 -187.96 -1.59 -17.86 16 25 C 0.13 3.69 6.61 40.61 0.27 3.96 16 26 C 0.10 4.14 6.56 44.99 0.30 4.44 16 27 C -0.18 -6.62 9.80 30.62 0.30 -6.32 16 28 C -0.22 -8.93 10.36 30.62 0.32 -8.61 16 29 H 0.25 14.34 8.32 -92.71 -0.77 13.57 16 30 H 0.07 3.62 5.36 -2.38 -0.01 3.61 16 31 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 32 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.04 1.66 8.14 -2.38 -0.02 1.65 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.41 9.56 6.50 -92.71 -0.60 8.96 16 37 H 0.15 1.99 6.37 -2.91 -0.02 1.97 16 38 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 39 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 40 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.11 3.99 8.14 -2.38 -0.02 3.97 16 44 H 0.07 3.13 6.37 -2.39 -0.02 3.11 16 45 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 46 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 47 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -82.03 390.38 2.50 -79.53 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.39 Total: 25.19 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 5.93 Total: -0.79 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -5.79 Total: -125.64 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -82.03 2.50 -79.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566591598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.696 kcal (2) G-P(sol) polarization free energy of solvation -82.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds