Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99966 * 2 1 4 4 O 1.20828 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99996 * 180.02562 * 3 2 1 6 6 H 1.08992 * 115.55398 * 61.69657 * 5 3 2 7 7 C 1.53079 * 117.52958 * 207.41478 * 5 3 2 8 8 C 1.53004 * 59.98507 * 107.46414 * 7 5 3 9 9 H 1.09001 * 117.49402 * 107.49860 * 8 7 5 10 10 C 1.50693 * 117.49949 * 252.49321 * 8 7 5 11 11 O 1.21273 * 120.00128 * 332.89500 * 10 8 7 12 12 N 1.34782 * 120.00054 * 152.88927 * 10 8 7 13 13 C 1.46495 * 119.99844 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46892 * 179.97438 * 13 12 10 15 15 C 1.53939 * 113.83035 * 86.32485 * 14 13 12 16 16 N 1.47962 * 86.18040 * 138.08911 * 15 14 13 17 17 C 1.46896 * 111.00010 * 222.41382 * 16 15 14 18 18 C 1.50696 * 109.47399 * 269.36100 * 17 16 15 19 19 O 1.21295 * 120.00031 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00000 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00091 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99819 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99825 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00279 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99746 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47195 * 89.99975 * 25 23 21 27 27 H 1.48497 * 109.47001 * 210.00033 * 25 23 21 28 28 H 1.48501 * 109.46945 * 330.00171 * 25 23 21 29 29 C 1.47957 * 90.76254 * 335.31362 * 16 15 14 30 30 H 1.08999 * 109.47133 * 300.00132 * 1 2 3 31 31 H 1.08994 * 109.47046 * 60.00015 * 1 2 3 32 32 H 1.09002 * 109.47323 * 180.02562 * 1 2 3 33 33 H 1.08991 * 117.51441 * 359.97438 * 7 5 3 34 34 H 1.09004 * 117.48726 * 214.95008 * 7 5 3 35 35 H 0.97000 * 119.99742 * 359.97438 * 12 10 8 36 36 H 1.08999 * 109.47071 * 60.00548 * 13 12 10 37 37 H 1.08998 * 109.47690 * 299.99850 * 13 12 10 38 38 H 1.09003 * 112.93808 * 314.66814 * 14 13 12 39 39 H 1.09000 * 113.75892 * 252.41213 * 15 14 13 40 40 H 1.08998 * 113.75576 * 23.77670 * 15 14 13 41 41 H 1.09005 * 109.46990 * 29.36711 * 17 16 15 42 42 H 1.08998 * 109.46735 * 149.36205 * 17 16 15 43 43 H 0.97002 * 119.99827 * 0.02562 * 20 18 17 44 44 H 0.96994 * 120.00238 * 179.97438 * 24 23 21 45 45 H 1.09001 * 113.75914 * 270.36458 * 29 16 15 46 46 H 1.09010 * 113.85659 * 139.02165 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0599 0.8341 -0.8666 7 6 4.2100 2.5151 0.6244 8 6 4.2797 1.1693 1.3489 9 1 5.2425 0.6587 1.3705 10 6 3.4237 0.9949 2.5768 11 8 3.1120 1.9606 3.2408 12 7 3.0045 -0.2344 2.9370 13 6 2.1719 -0.4037 4.1304 14 6 1.8368 -1.8855 4.3123 15 6 2.9033 -2.6729 5.0946 16 7 1.7707 -3.3287 5.7848 17 6 2.0314 -3.4507 7.2253 18 6 2.7089 -4.7678 7.5034 19 8 2.9511 -5.5297 6.5912 20 7 3.0465 -5.0987 8.7656 21 6 3.6633 -6.2967 9.0185 22 1 3.8790 -6.9751 8.2063 23 6 4.0109 -6.6380 10.3198 24 7 3.7489 -5.8123 11.3080 25 14 4.8519 -8.2700 10.6644 26 1 6.3242 -8.0954 10.5811 27 1 4.4851 -8.7384 12.0250 28 1 4.4150 -9.2736 9.6608 29 6 0.8992 -2.1674 5.5001 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5451 3.2744 1.0358 34 1 5.1269 2.8896 0.1691 35 1 3.2535 -1.0067 2.4057 36 1 1.2496 0.1653 4.0137 37 1 2.7130 -0.0433 5.0052 38 1 1.5275 -2.3680 3.3851 39 1 3.4916 -3.3500 4.4752 40 1 3.5159 -2.0521 5.7484 41 1 2.6777 -2.6344 7.5480 42 1 1.0886 -3.4049 7.7703 43 1 2.8531 -4.4892 9.4950 44 1 3.9912 -6.0508 12.2164 45 1 0.9255 -1.3987 6.2725 46 1 -0.1145 -2.4388 5.2048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567824144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = -88.553036 kcal Electronic energy + Delta-G solvation = -28917.017311 eV Core-core repulsion = 24616.267578 eV Total energy + Delta-G solvation = -4300.749733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27125 -40.30875 -39.64135 -37.77950 -37.30067 -36.31360 -34.99305 -33.87371 -31.37487 -30.84291 -28.61233 -27.79912 -26.08747 -25.50884 -24.90810 -24.00349 -22.37147 -21.18187 -20.58318 -19.63385 -19.20346 -18.46796 -17.85168 -17.44510 -17.15876 -16.57204 -16.24592 -16.15115 -15.83159 -15.36888 -15.11606 -14.95447 -14.54633 -14.38337 -14.09285 -13.67943 -13.57905 -13.50389 -13.24738 -12.93224 -12.62726 -12.60254 -12.41925 -12.24498 -11.64107 -11.49968 -11.45004 -11.36878 -11.21446 -11.20502 -11.04933 -10.86758 -10.72365 -10.68574 -10.38937 -10.21753 -10.16901 -9.49105 -9.35972 -8.73786 -8.17297 -7.94969 -6.40549 -3.81328 1.63846 2.11012 2.16815 2.71023 3.13803 3.18068 3.26502 3.32501 3.87811 3.93674 3.98358 4.07353 4.18164 4.23240 4.33979 4.47851 4.56236 4.68917 4.74244 4.82018 4.95012 5.03768 5.06575 5.16547 5.20107 5.20933 5.31757 5.36385 5.47888 5.49248 5.55033 5.67412 5.69529 5.74751 5.92183 5.92912 6.05305 6.22601 6.28182 6.56903 7.13820 7.18269 7.28492 7.56009 7.87246 8.07269 8.63494 9.19620 9.56118 10.08521 10.77374 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.001857 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.104958 B =15074.243531 C =15420.352992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.485 3.515 4 O -0.494 6.494 5 C -0.148 4.148 6 H 0.152 0.848 7 C -0.112 4.112 8 C -0.163 4.163 9 H 0.147 0.853 10 C 0.532 3.468 11 O -0.530 6.530 12 N -0.716 5.716 13 C 0.128 3.872 14 C -0.130 4.130 15 C 0.016 3.984 16 N -0.448 5.448 17 C 0.009 3.991 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.009 3.991 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 15.547 -21.664 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.327 3.673 4 O -0.381 6.381 5 C -0.167 4.167 6 H 0.169 0.831 7 C -0.149 4.149 8 C -0.184 4.184 9 H 0.165 0.835 10 C 0.317 3.683 11 O -0.406 6.406 12 N -0.368 5.368 13 C 0.005 3.995 14 C -0.149 4.149 15 C -0.113 4.113 16 N -0.170 5.170 17 C -0.123 4.123 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.121 4.121 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.835 15.307 -21.727 26.729 hybrid contribution 0.513 -0.112 0.928 1.067 sum -2.322 15.196 -20.799 25.863 Atomic orbital electron populations 1.23327 0.75722 1.04117 1.02619 1.86488 1.23752 1.32667 1.83737 1.22572 0.90387 0.81728 0.72625 1.90704 1.66634 1.36487 1.44249 1.21874 0.88460 1.07431 0.98915 0.83060 1.23161 1.02725 0.90393 0.98645 1.22443 1.01317 1.04825 0.89845 0.83534 1.19588 0.80035 0.83267 0.85398 1.90746 1.56533 1.39359 1.53993 1.45916 1.52934 1.08847 1.29073 1.21460 0.94738 0.95892 0.87437 1.23285 0.98195 0.93631 0.99815 1.24040 0.94145 0.95968 0.97142 1.68371 1.07196 1.32154 1.09297 1.22486 1.01091 0.97867 0.90809 1.19687 0.84895 0.88440 0.83819 1.90516 1.58464 1.52711 1.44256 1.41887 1.53019 1.19042 1.06535 1.19688 1.33915 0.95325 0.93803 0.87979 1.25257 0.98114 0.99520 0.95153 1.69608 1.47892 1.36720 1.00242 0.85861 0.79233 0.81562 0.77652 1.20447 1.20941 1.19422 1.23951 0.98776 0.93315 0.96053 0.91786 0.91839 0.87612 0.86431 0.85951 0.75885 0.91283 0.91063 0.87507 0.88994 0.91306 0.92432 0.89408 0.77559 0.91910 0.91135 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -2.94 10.57 -39.25 -0.41 -3.36 16 3 C 0.49 4.64 6.65 36.01 0.24 4.88 16 4 O -0.49 -6.32 16.36 -18.75 -0.31 -6.63 16 5 C -0.15 -0.92 6.29 -91.73 -0.58 -1.50 16 6 H 0.15 0.47 8.14 -51.93 -0.42 0.04 16 7 C -0.11 -0.73 9.56 -26.69 -0.26 -0.99 16 8 C -0.16 -1.09 6.17 -91.77 -0.57 -1.66 16 9 H 0.15 0.56 8.14 -51.93 -0.42 0.13 16 10 C 0.53 5.55 6.52 -10.99 -0.07 5.48 16 11 O -0.53 -7.78 16.60 5.56 0.09 -7.69 16 12 N -0.72 -6.25 5.56 -60.30 -0.34 -6.59 16 13 C 0.13 1.23 5.52 -4.04 -0.02 1.21 16 14 C -0.13 -1.29 3.93 -89.69 -0.35 -1.64 16 15 C 0.02 0.21 7.51 -2.76 -0.02 0.19 16 16 N -0.45 -7.12 5.65 -239.73 -1.35 -8.47 16 17 C 0.01 0.17 5.28 -4.98 -0.03 0.14 16 18 C 0.45 10.65 7.83 -10.98 -0.09 10.56 16 19 O -0.58 -15.86 16.01 5.54 0.09 -15.77 16 20 N -0.57 -14.51 5.29 -10.96 -0.06 -14.57 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.01 0.10 7.51 -2.77 -0.02 0.08 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.12 1.09 7.72 -51.93 -0.40 0.69 16 34 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.41 2.71 8.47 -40.82 -0.35 2.37 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 41 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 42 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 46 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -37.29 397.90 -8.33 -45.62 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.80 Total: 9.31 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.93 Total: 10.02 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -1.02 Total: -53.61 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.54 Total: -33.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.29 -8.33 -45.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567824144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.936 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds