Wall clock time and date at job start Sat Apr 11 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00150 * 2 1 4 4 O 1.20826 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00305 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.54432 * 298.30632 * 5 3 2 7 7 C 1.52998 * 117.52104 * 152.61068 * 5 3 2 8 8 C 1.52995 * 117.50480 * 83.97906 * 5 3 2 9 9 H 1.08997 * 117.50245 * 215.03191 * 8 5 3 10 10 C 1.50709 * 117.49672 * 0.02562 * 8 5 3 11 11 O 1.21271 * 119.99659 * 95.85195 * 10 8 5 12 12 N 1.34778 * 119.99762 * 275.85329 * 10 8 5 13 13 C 1.46500 * 119.99466 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46907 * 179.97438 * 13 12 10 15 15 C 1.53933 * 113.73332 * 273.76426 * 14 13 12 16 16 N 1.48189 * 86.10288 * 221.95585 * 15 14 13 17 17 C 1.46897 * 111.06761 * 137.52343 * 16 15 14 18 18 C 1.50700 * 109.47279 * 90.56776 * 17 16 15 19 19 O 1.21284 * 119.99739 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99944 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99774 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00010 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00128 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99637 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00512 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47303 * 89.99303 * 25 23 21 27 27 H 1.48495 * 109.47246 * 209.99713 * 25 23 21 28 28 H 1.48498 * 109.46979 * 329.99817 * 25 23 21 29 29 C 1.47959 * 90.79546 * 24.60086 * 16 15 14 30 30 H 1.09001 * 109.47372 * 299.99752 * 1 2 3 31 31 H 1.08998 * 109.47594 * 60.00159 * 1 2 3 32 32 H 1.09004 * 109.47705 * 180.02562 * 1 2 3 33 33 H 1.09001 * 117.49898 * 145.02556 * 7 5 3 34 34 H 1.08997 * 117.49787 * 0.02562 * 7 5 3 35 35 H 0.96994 * 120.00119 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.47381 * 299.99757 * 13 12 10 37 37 H 1.08998 * 109.47125 * 59.99758 * 13 12 10 38 38 H 1.09002 * 112.93454 * 45.33437 * 14 13 12 39 39 H 1.08998 * 113.76235 * 336.24142 * 15 14 13 40 40 H 1.09002 * 113.75686 * 107.60383 * 15 14 13 41 41 H 1.09000 * 109.47098 * 210.57007 * 17 16 15 42 42 H 1.09001 * 109.47255 * 330.56248 * 17 16 15 43 43 H 0.97004 * 119.99458 * 0.02562 * 20 18 17 44 44 H 0.97003 * 119.99939 * 180.02562 * 24 23 21 45 45 H 1.09000 * 113.75632 * 221.08168 * 29 16 15 46 46 H 1.09004 * 113.85708 * 89.73133 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0604 0.8336 0.8650 7 6 4.2089 2.5151 -0.6248 8 6 4.2788 1.1700 -1.3504 9 1 5.2415 0.6593 -1.3731 10 6 3.4218 0.9962 -2.5779 11 8 3.1110 1.9622 -3.2420 12 7 3.0010 -0.2326 -2.9375 13 6 2.1675 -0.4014 -4.1304 14 6 1.8316 -1.8829 -4.3124 15 6 2.8997 -2.6689 -5.0940 16 7 1.7654 -3.3242 -5.7868 17 6 2.0249 -3.4440 -7.2277 18 6 2.7034 -4.7600 -7.5083 19 8 2.9473 -5.5228 -6.5974 20 7 3.0392 -5.0893 -8.7714 21 6 3.6559 -6.2867 -9.0267 22 1 3.8731 -6.9660 -8.2156 23 6 4.0026 -6.6260 -10.3287 24 7 3.7388 -5.7992 -11.3155 25 14 4.8437 -8.2573 -10.6765 26 1 3.8171 -9.2966 -10.9431 27 1 5.7253 -8.1165 -11.8631 28 1 5.6572 -8.6555 -9.4998 29 6 0.8931 -2.1641 -5.4997 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 5.1259 2.8897 -0.1699 34 1 3.5432 3.2745 -1.0348 35 1 3.2500 -1.0052 -2.4065 36 1 1.2460 0.1688 -4.0134 37 1 2.7086 -0.0417 -5.0056 38 1 1.5227 -2.3654 -3.3851 39 1 3.5128 -2.0472 -5.7464 40 1 3.4876 -3.3461 -4.4744 41 1 1.0815 -3.3983 -7.7718 42 1 2.6699 -2.6266 -7.5500 43 1 2.8444 -4.4790 -9.4998 44 1 3.9804 -6.0362 -12.2246 45 1 -0.1194 -2.4387 -5.2037 46 1 0.9166 -1.3934 -6.2702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567824146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:47 Heat of formation + Delta-G solvation = -88.660162 kcal Electronic energy + Delta-G solvation = -28918.466624 eV Core-core repulsion = 24617.712245 eV Total energy + Delta-G solvation = -4300.754379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27359 -40.29747 -39.63371 -37.78067 -37.30307 -36.31536 -34.99099 -33.87390 -31.37405 -30.84112 -28.61224 -27.79660 -26.08871 -25.50822 -24.90698 -24.00289 -22.37004 -21.18129 -20.58337 -19.63276 -19.20241 -18.46861 -17.85127 -17.44529 -17.15951 -16.57277 -16.24505 -16.14922 -15.83251 -15.36883 -15.11503 -14.95255 -14.54557 -14.38218 -14.09163 -13.67937 -13.57872 -13.50442 -13.24738 -12.92973 -12.62704 -12.60359 -12.41843 -12.24297 -11.64191 -11.49751 -11.44736 -11.36987 -11.21382 -11.20504 -11.05323 -10.86813 -10.72722 -10.68318 -10.39092 -10.21714 -10.16848 -9.49065 -9.35994 -8.73586 -8.17224 -7.94888 -6.40528 -3.81285 1.63806 2.11035 2.16907 2.71042 3.13885 3.18225 3.26566 3.32323 3.87495 3.93792 3.98442 4.07368 4.18252 4.23246 4.34187 4.47841 4.56117 4.68895 4.74189 4.82029 4.95039 5.03806 5.06592 5.16545 5.20117 5.20889 5.31668 5.36327 5.47909 5.49275 5.55018 5.67564 5.69619 5.74839 5.92156 5.92928 6.05310 6.22638 6.28230 6.56554 7.13795 7.18261 7.28485 7.56045 7.87270 8.07282 8.63538 9.19649 9.56150 10.08569 10.77381 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.001858 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.107797 B =15069.512764 C =15416.387793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.350 6.350 3 C 0.485 3.515 4 O -0.494 6.494 5 C -0.148 4.148 6 H 0.152 0.848 7 C -0.112 4.112 8 C -0.163 4.163 9 H 0.147 0.853 10 C 0.532 3.468 11 O -0.530 6.530 12 N -0.716 5.716 13 C 0.128 3.872 14 C -0.130 4.130 15 C 0.016 3.984 16 N -0.448 5.448 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.009 3.991 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.406 0.594 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.091 0.909 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 15.527 21.697 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.327 3.673 4 O -0.381 6.381 5 C -0.167 4.167 6 H 0.169 0.831 7 C -0.149 4.149 8 C -0.184 4.184 9 H 0.165 0.835 10 C 0.317 3.683 11 O -0.406 6.406 12 N -0.368 5.368 13 C 0.005 3.995 14 C -0.149 4.149 15 C -0.113 4.113 16 N -0.170 5.170 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.121 4.121 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.794 15.293 21.760 26.742 hybrid contribution 0.492 -0.119 -0.929 1.058 sum -2.303 15.174 20.830 25.874 Atomic orbital electron populations 1.23327 0.75723 1.04118 1.02619 1.86486 1.23751 1.32669 1.83735 1.22571 0.90388 0.81729 0.72627 1.90703 1.66634 1.36488 1.44249 1.21860 0.88474 1.07423 0.98922 0.83065 1.23147 1.02739 0.90404 0.98642 1.22442 1.01316 1.04835 0.89833 0.83529 1.19590 0.80037 0.83268 0.85394 1.90746 1.56584 1.39327 1.53970 1.45914 1.52867 1.08861 1.29128 1.21464 0.94723 0.95908 0.87447 1.23284 0.98179 0.93632 0.99822 1.24076 0.94119 0.95978 0.97116 1.68413 1.07173 1.32223 1.09235 1.22482 1.01092 0.97867 0.90806 1.19686 0.84896 0.88444 0.83810 1.90513 1.58423 1.52629 1.44375 1.41886 1.53044 1.19043 1.06513 1.19686 1.33908 0.95340 0.93790 0.87981 1.25259 0.98132 0.99501 0.95168 1.69616 1.47983 1.36615 1.00251 0.85857 0.79042 0.81414 0.77971 1.20413 1.20958 1.19452 1.23945 0.98757 0.93336 0.96046 0.91847 0.91778 0.87613 0.85952 0.86431 0.75886 0.91280 0.91071 0.87514 0.91290 0.88984 0.89405 0.92441 0.77559 0.91916 0.89051 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.35 -2.94 10.56 -39.24 -0.41 -3.36 16 3 C 0.49 4.63 6.65 36.01 0.24 4.87 16 4 O -0.49 -6.32 16.35 -18.75 -0.31 -6.63 16 5 C -0.15 -0.92 6.28 -91.78 -0.58 -1.50 16 6 H 0.15 0.47 8.14 -51.93 -0.42 0.04 16 7 C -0.11 -0.73 9.56 -26.73 -0.26 -0.99 16 8 C -0.16 -1.09 6.18 -91.77 -0.57 -1.66 16 9 H 0.15 0.56 8.14 -51.93 -0.42 0.13 16 10 C 0.53 5.55 6.52 -10.98 -0.07 5.48 16 11 O -0.53 -7.78 16.60 5.56 0.09 -7.69 16 12 N -0.72 -6.25 5.56 -60.29 -0.33 -6.59 16 13 C 0.13 1.23 5.51 -4.04 -0.02 1.21 16 14 C -0.13 -1.29 3.93 -89.69 -0.35 -1.64 16 15 C 0.02 0.21 7.53 -2.63 -0.02 0.19 16 16 N -0.45 -7.12 5.65 -239.52 -1.35 -8.47 16 17 C 0.01 0.17 5.28 -4.98 -0.03 0.14 16 18 C 0.45 10.65 7.83 -10.98 -0.09 10.57 16 19 O -0.58 -15.86 16.01 5.55 0.09 -15.77 16 20 N -0.57 -14.52 5.29 -10.97 -0.06 -14.57 16 21 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.01 0.10 7.52 -2.76 -0.02 0.08 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.12 1.09 7.71 -51.93 -0.40 0.69 16 35 H 0.41 2.71 8.47 -40.82 -0.35 2.37 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 42 H 0.06 0.91 7.39 -51.93 -0.38 0.53 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -37.29 397.91 -8.33 -45.62 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.80 Total: 9.31 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -0.93 Total: 10.02 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -1.02 Total: -53.62 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.54 Total: -33.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.29 -8.33 -45.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567824146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.044 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds