Wall clock time and date at job start Sat Apr 11 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00150 * 2 1 4 4 O 1.20826 * 120.00074 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00305 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.54432 * 298.30632 * 5 3 2 7 7 C 1.52998 * 117.52104 * 152.61068 * 5 3 2 8 8 C 1.52995 * 117.50480 * 83.97906 * 5 3 2 9 9 H 1.08997 * 117.50245 * 215.03191 * 8 5 3 10 10 C 1.50709 * 117.49672 * 0.02562 * 8 5 3 11 11 O 1.21271 * 119.99659 * 95.85195 * 10 8 5 12 12 N 1.34778 * 119.99762 * 275.85329 * 10 8 5 13 13 C 1.46500 * 119.99466 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46907 * 179.97438 * 13 12 10 15 15 C 1.53933 * 113.73332 * 273.76426 * 14 13 12 16 16 N 1.48189 * 86.10288 * 221.95585 * 15 14 13 17 17 C 1.46897 * 111.06761 * 137.52343 * 16 15 14 18 18 C 1.50700 * 109.47279 * 90.56776 * 17 16 15 19 19 O 1.21284 * 119.99739 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99944 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99774 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00010 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00128 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99637 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00512 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47303 * 89.99303 * 25 23 21 27 27 H 1.48495 * 109.47246 * 209.99713 * 25 23 21 28 28 H 1.48498 * 109.46979 * 329.99817 * 25 23 21 29 29 C 1.47959 * 90.79546 * 24.60086 * 16 15 14 30 30 H 1.09001 * 109.47372 * 299.99752 * 1 2 3 31 31 H 1.08998 * 109.47594 * 60.00159 * 1 2 3 32 32 H 1.09004 * 109.47705 * 180.02562 * 1 2 3 33 33 H 1.09001 * 117.49898 * 145.02556 * 7 5 3 34 34 H 1.08997 * 117.49787 * 0.02562 * 7 5 3 35 35 H 0.96994 * 120.00119 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.47381 * 299.99757 * 13 12 10 37 37 H 1.08998 * 109.47125 * 59.99758 * 13 12 10 38 38 H 1.09002 * 112.93454 * 45.33437 * 14 13 12 39 39 H 1.08998 * 113.76235 * 336.24142 * 15 14 13 40 40 H 1.09002 * 113.75686 * 107.60383 * 15 14 13 41 41 H 1.09000 * 109.47098 * 210.57007 * 17 16 15 42 42 H 1.09001 * 109.47255 * 330.56248 * 17 16 15 43 43 H 0.97004 * 119.99458 * 0.02562 * 20 18 17 44 44 H 0.97003 * 119.99939 * 180.02562 * 24 23 21 45 45 H 1.09000 * 113.75632 * 221.08168 * 29 16 15 46 46 H 1.09004 * 113.85708 * 89.73133 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0604 0.8336 0.8650 7 6 4.2089 2.5151 -0.6248 8 6 4.2788 1.1700 -1.3504 9 1 5.2415 0.6593 -1.3731 10 6 3.4218 0.9962 -2.5779 11 8 3.1110 1.9622 -3.2420 12 7 3.0010 -0.2326 -2.9375 13 6 2.1675 -0.4014 -4.1304 14 6 1.8316 -1.8829 -4.3124 15 6 2.8997 -2.6689 -5.0940 16 7 1.7654 -3.3242 -5.7868 17 6 2.0249 -3.4440 -7.2277 18 6 2.7034 -4.7600 -7.5083 19 8 2.9473 -5.5228 -6.5974 20 7 3.0392 -5.0893 -8.7714 21 6 3.6559 -6.2867 -9.0267 22 1 3.8731 -6.9660 -8.2156 23 6 4.0026 -6.6260 -10.3287 24 7 3.7388 -5.7992 -11.3155 25 14 4.8437 -8.2573 -10.6765 26 1 3.8171 -9.2966 -10.9431 27 1 5.7253 -8.1165 -11.8631 28 1 5.6572 -8.6555 -9.4998 29 6 0.8931 -2.1641 -5.4997 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 5.1259 2.8897 -0.1699 34 1 3.5432 3.2745 -1.0348 35 1 3.2500 -1.0052 -2.4065 36 1 1.2460 0.1688 -4.0134 37 1 2.7086 -0.0417 -5.0056 38 1 1.5227 -2.3654 -3.3851 39 1 3.5128 -2.0472 -5.7464 40 1 3.4876 -3.3461 -4.4744 41 1 1.0815 -3.3983 -7.7718 42 1 2.6699 -2.6266 -7.5500 43 1 2.8444 -4.4790 -9.4998 44 1 3.9804 -6.0362 -12.2246 45 1 -0.1194 -2.4387 -5.2037 46 1 0.9166 -1.3934 -6.2702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567824146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:46 Heat of formation + Delta-G solvation = -118.644017 kcal Electronic energy + Delta-G solvation = -28919.766822 eV Core-core repulsion = 24617.712245 eV Total energy + Delta-G solvation = -4302.054576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.97600 -41.32142 -40.55928 -39.55866 -37.97561 -37.01511 -36.03668 -35.77605 -33.30815 -32.13145 -29.21750 -28.94262 -27.09508 -26.91365 -25.85159 -24.92459 -23.45310 -21.81960 -21.35662 -21.00413 -20.46900 -19.89046 -19.16545 -18.16759 -17.86806 -17.77251 -17.41801 -16.97729 -16.69455 -16.54325 -16.46215 -16.22273 -15.92804 -15.41625 -15.36532 -14.95257 -14.74230 -14.28536 -14.27028 -14.13101 -13.70911 -13.61843 -13.49505 -13.19719 -12.98264 -12.95818 -12.68472 -12.43965 -12.38126 -12.12684 -12.00628 -11.86470 -11.83622 -11.68289 -11.67124 -11.53398 -11.49624 -11.02683 -10.37049 -10.17533 -10.01169 -9.63472 -8.46651 -5.95509 0.94376 1.37804 1.39221 1.41150 1.54090 1.56219 2.03969 2.06057 2.28592 2.58912 2.77899 3.19528 3.31113 3.43262 3.46239 3.56633 3.65527 3.72743 3.88891 4.16603 4.18171 4.23347 4.26202 4.27347 4.29871 4.36955 4.47745 4.51858 4.60562 4.64968 4.66429 4.72912 4.81085 4.83502 4.86773 5.03175 5.20353 5.28446 5.38331 5.40201 5.44508 5.90291 6.09009 6.45151 6.59583 6.60737 7.13082 7.13507 7.56772 8.13028 8.70838 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.001858 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.107797 B =15069.512764 C =15416.387793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.478 3.522 4 O -0.537 6.537 5 C -0.138 4.138 6 H 0.193 0.807 7 C -0.118 4.118 8 C -0.160 4.160 9 H 0.185 0.815 10 C 0.523 3.477 11 O -0.581 6.581 12 N -0.707 5.707 13 C 0.135 3.865 14 C -0.100 4.100 15 C 0.010 3.990 16 N -0.483 5.483 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.578 5.578 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C 0.013 3.987 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.104 0.896 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 15.278 22.705 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.322 3.678 4 O -0.426 6.426 5 C -0.157 4.157 6 H 0.210 0.790 7 C -0.155 4.155 8 C -0.180 4.180 9 H 0.202 0.798 10 C 0.310 3.690 11 O -0.461 6.461 12 N -0.358 5.358 13 C 0.011 3.989 14 C -0.119 4.119 15 C -0.118 4.118 16 N -0.205 5.205 17 C -0.109 4.109 18 C 0.230 3.770 19 O -0.503 6.503 20 N -0.215 5.215 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.116 4.116 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.100 0.900 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.139 15.025 22.775 27.368 hybrid contribution 0.212 -0.035 -1.220 1.239 sum -1.928 14.990 21.554 26.325 Atomic orbital electron populations 1.23519 0.75029 1.05735 1.02110 1.86493 1.24567 1.32147 1.83261 1.23333 0.91826 0.81354 0.71315 1.90688 1.67836 1.37810 1.46311 1.22109 0.86325 1.07295 0.99948 0.78962 1.23244 1.03578 0.89785 0.98910 1.22551 1.01953 1.05457 0.88056 0.79780 1.20301 0.79801 0.82775 0.86113 1.90724 1.58611 1.40881 1.55920 1.45871 1.52094 1.09090 1.28747 1.21310 0.94662 0.95381 0.87578 1.23047 0.95987 0.93230 0.99678 1.24111 0.94314 0.96032 0.97373 1.68379 1.09169 1.35124 1.07842 1.22356 1.01461 0.94342 0.92752 1.20809 0.83563 0.90074 0.82577 1.90474 1.59825 1.54619 1.45403 1.41978 1.53473 1.18648 1.07439 1.19648 1.36106 0.96539 0.93877 0.90391 1.26058 0.98151 1.02768 0.94491 1.69678 1.48072 1.37920 1.00629 0.84919 0.78162 0.77316 0.77895 1.19649 1.19535 1.19701 1.24057 0.98927 0.91906 0.96684 0.91721 0.93030 0.84899 0.82364 0.89991 0.74440 0.91509 0.92064 0.86219 0.91149 0.90394 0.87590 0.90467 0.77106 0.91339 0.87727 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -5.36 10.56 -51.37 -0.54 -5.91 16 3 C 0.48 8.70 6.65 71.24 0.47 9.17 16 4 O -0.54 -14.03 16.35 21.96 0.36 -13.67 16 5 C -0.14 -1.39 6.28 -11.54 -0.07 -1.46 16 6 H 0.19 0.33 8.14 -2.39 -0.02 0.31 16 7 C -0.12 -1.35 9.56 30.59 0.29 -1.06 16 8 C -0.16 -1.75 6.18 -11.54 -0.07 -1.82 16 9 H 0.19 0.63 8.14 -2.39 -0.02 0.61 16 10 C 0.52 10.44 6.52 87.66 0.57 11.01 16 11 O -0.58 -17.36 16.60 -3.00 -0.05 -17.41 16 12 N -0.71 -11.29 5.56 -463.06 -2.57 -13.86 16 13 C 0.13 2.42 5.51 86.38 0.48 2.89 16 14 C -0.10 -1.79 3.93 -10.15 -0.04 -1.83 16 15 C 0.01 0.27 7.53 86.36 0.65 0.92 16 16 N -0.48 -14.73 5.65 -911.70 -5.15 -19.88 16 17 C 0.02 0.77 5.28 85.56 0.45 1.23 16 18 C 0.44 21.34 7.83 87.66 0.69 22.03 16 19 O -0.62 -34.76 16.01 -3.04 -0.05 -34.81 16 20 N -0.58 -30.03 5.29 -306.99 -1.62 -31.65 16 21 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 C 0.01 0.27 7.52 86.41 0.65 0.92 16 30 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 31 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 32 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.58 7.71 -2.39 -0.02 1.57 16 35 H 0.42 4.64 8.47 -92.71 -0.79 3.85 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.26 7.87 -2.39 -0.02 1.24 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.77 7.26 -2.39 -0.02 1.75 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.11 3.22 8.08 -2.39 -0.02 3.20 16 42 H 0.08 2.33 7.39 -2.39 -0.02 2.31 16 43 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 1.52 7.88 -2.39 -0.02 1.50 16 Total: -1.00 -84.58 397.91 -1.27 -85.85 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.49 Total: 31.08 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.54 Total: 24.96 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -9.06 Total: -115.25 kcal Atomic # 8 Polarization: -71.52 SS G_CDS: -0.28 Total: -71.80 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -84.58 -1.27 -85.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567824146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.795 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds