Wall clock time and date at job start Sat Apr 11 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.01216 * 54.29966 * 11 10 9 13 13 C 1.54262 * 110.03126 * 292.90636 * 11 10 9 14 14 C 1.54965 * 104.15911 * 217.13226 * 13 11 10 15 15 C 1.54888 * 102.77803 * 37.89093 * 14 13 11 16 16 C 1.53879 * 110.03323 * 175.68624 * 11 10 9 17 17 H 1.08997 * 110.03092 * 238.56662 * 16 11 10 18 18 N 1.46497 * 110.02938 * 0.02562 * 16 11 10 19 19 C 1.34781 * 119.99605 * 204.99599 * 18 16 11 20 20 O 1.21503 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.48274 * 120.00085 * 179.97438 * 19 18 16 22 22 C 1.40278 * 119.24306 * 180.02562 * 21 19 18 23 23 C 1.36509 * 119.82113 * 179.97438 * 22 21 19 24 24 C 1.40754 * 118.24073 * 0.02562 * 23 22 21 25 25 C 1.40420 * 121.28545 * 180.02562 * 24 23 22 26 26 C 1.36132 * 119.65324 * 180.02562 * 25 24 23 27 27 C 1.39440 * 120.91366 * 359.95292 * 26 25 24 28 28 C 1.35993 * 121.08304 * 0.02562 * 27 26 25 29 29 C 1.40819 * 119.73602 * 0.02562 * 28 27 26 30 30 N 1.31877 * 119.23823 * 359.73004 * 21 19 18 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 34 34 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 35 35 H 1.08996 * 110.48825 * 335.78142 * 13 11 10 36 36 H 1.08999 * 110.48577 * 98.42783 * 13 11 10 37 37 H 1.09000 * 110.72226 * 279.57513 * 14 13 11 38 38 H 1.09007 * 110.76427 * 156.22182 * 14 13 11 39 39 H 1.09002 * 110.49015 * 203.40644 * 15 14 13 40 40 H 1.09007 * 110.59982 * 80.81294 * 15 14 13 41 41 H 0.96998 * 120.00831 * 25.00058 * 18 16 11 42 42 H 1.07998 * 120.08994 * 359.95664 * 22 21 19 43 43 H 1.07997 * 120.87970 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.17373 * 359.96806 * 25 24 23 45 45 H 1.07998 * 119.54138 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.45171 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.13017 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3674 -4.7147 -0.8342 13 6 0.2911 -4.8551 1.3325 14 6 0.1263 -6.3659 1.6352 15 6 1.4765 -6.9593 1.1620 16 6 1.8169 -6.1571 -0.1110 17 1 1.4854 -6.7015 -0.9951 18 7 3.2602 -5.9159 -0.1807 19 6 4.0675 -6.8229 -0.7658 20 8 3.5981 -7.8402 -1.2359 21 6 5.5282 -6.5786 -0.8369 22 6 6.3536 -7.5329 -1.4500 23 6 7.7000 -7.3198 -1.5225 24 6 8.2171 -6.1328 -0.9704 25 6 9.5916 -5.8484 -1.0100 26 6 10.0558 -4.6904 -0.4653 27 6 9.1847 -3.7799 0.1318 28 6 7.8475 -4.0211 0.1883 29 6 7.3280 -5.2083 -0.3628 30 7 6.0209 -5.4664 -0.3276 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8912 34 1 2.6841 -3.7150 0.8887 35 1 0.8672 -4.3690 2.1198 36 1 -0.6832 -4.3789 1.2220 37 1 -0.7016 -6.7857 1.0638 38 1 -0.0159 -6.5328 2.7030 39 1 1.3667 -8.0182 0.9277 40 1 2.2457 -6.8152 1.9208 41 1 3.6350 -5.1036 0.1943 42 1 5.9250 -8.4340 -1.8633 43 1 8.3513 -8.0432 -1.9902 44 1 10.2771 -6.5453 -1.4693 45 1 11.1134 -4.4738 -0.4964 46 1 9.5785 -2.8682 0.5563 47 1 7.1867 -3.3050 0.6541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568541899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:09 Heat of formation + Delta-G solvation = 8.153871 kcal Electronic energy + Delta-G solvation = -28818.922111 eV Core-core repulsion = 24965.507918 eV Total energy + Delta-G solvation = -3853.414193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.14348 -41.10795 -39.41636 -37.85744 -36.60789 -35.08652 -34.39334 -33.34624 -31.83705 -31.06280 -30.04882 -28.83414 -26.31368 -25.96575 -24.70065 -24.51590 -23.12175 -22.41770 -21.67238 -20.46342 -19.77874 -19.12421 -18.98410 -18.19237 -17.43378 -16.84710 -16.48887 -16.27526 -16.20191 -15.77007 -15.73412 -15.50040 -15.37186 -15.13533 -15.05996 -14.87370 -14.57208 -14.24912 -14.07853 -13.62800 -13.06842 -12.89758 -12.70951 -12.66748 -12.64571 -12.48614 -12.34331 -12.02274 -11.91443 -11.85757 -11.81902 -11.68248 -11.59996 -11.48166 -11.22733 -10.96387 -10.65285 -10.22454 -9.85289 -9.31779 -9.14478 -8.42407 -5.36143 -0.89002 -0.38402 0.87943 1.32126 1.55966 1.67093 1.81476 1.94048 2.16104 2.68389 2.88743 3.04347 3.32155 3.37721 3.53175 3.56717 3.62872 3.72877 3.80291 3.86078 3.98254 4.12194 4.21166 4.26712 4.34022 4.36291 4.38133 4.41780 4.47476 4.52078 4.66278 4.74587 4.79296 4.86947 4.87473 4.98550 4.99339 5.05246 5.11968 5.14199 5.22748 5.34071 5.38876 5.40450 5.40818 5.46333 5.55944 5.83029 6.24974 6.47859 6.61524 6.97040 7.06701 7.96623 8.08093 9.09875 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007930 B = 0.003783 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.833113 B = 7400.711853 C =10443.152525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.100 4.100 3 Si 1.129 2.871 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.336 4.336 8 H 0.062 0.938 9 N -0.750 5.750 10 C 0.170 3.830 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.110 4.110 14 C -0.110 4.110 15 C -0.124 4.124 16 C 0.149 3.851 17 H 0.089 0.911 18 N -0.701 5.701 19 C 0.565 3.435 20 O -0.559 6.559 21 C 0.092 3.908 22 C -0.141 4.141 23 C -0.045 4.045 24 C -0.101 4.101 25 C -0.098 4.098 26 C -0.103 4.103 27 C -0.092 4.092 28 C -0.117 4.117 29 C 0.097 3.903 30 N -0.469 5.469 31 H 0.245 0.755 32 H 0.363 0.637 33 H 0.010 0.990 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.190 0.810 44 H 0.170 0.830 45 H 0.167 0.833 46 H 0.156 0.844 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.414 -17.453 0.282 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.292 4.292 3 Si 0.953 3.047 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.217 1.217 7 C -0.467 4.467 8 H 0.080 0.920 9 N -0.395 5.395 10 C 0.043 3.957 11 C -0.121 4.121 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.163 4.163 16 C 0.044 3.956 17 H 0.107 0.893 18 N -0.353 5.353 19 C 0.351 3.649 20 O -0.437 6.437 21 C -0.060 4.060 22 C -0.161 4.161 23 C -0.070 4.070 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.112 4.112 28 C -0.136 4.136 29 C -0.027 4.027 30 N -0.181 5.181 31 H 0.055 0.945 32 H 0.195 0.805 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.175 0.825 43 H 0.207 0.793 44 H 0.187 0.813 45 H 0.184 0.816 46 H 0.174 0.826 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.644 -15.860 0.361 25.250 hybrid contribution -0.089 -1.486 -0.235 1.507 sum 19.555 -17.345 0.126 26.140 Atomic orbital electron populations 1.70959 1.07080 1.27942 1.56110 1.27199 0.97124 1.04513 1.00332 0.82615 0.73485 0.71549 0.77009 1.20821 1.20106 1.21744 1.20383 0.92232 0.87141 1.46977 0.91969 1.42482 1.04804 1.01625 1.90540 1.20637 0.93595 0.84694 0.96760 1.22157 0.97193 0.92937 0.99829 0.90504 1.22322 0.99564 0.97697 0.95250 1.22451 0.96761 0.93295 1.02214 1.22722 0.98113 0.99704 0.95746 1.21736 0.78536 0.95204 1.00125 0.89273 1.46337 1.07802 1.23419 1.57743 1.18255 0.85781 0.83118 0.77779 1.90716 1.76217 1.27870 1.48896 1.21309 0.94118 0.92213 0.98388 1.21854 0.94535 1.00389 0.99346 1.21919 0.94689 0.95704 0.94699 1.19326 0.96224 0.95531 0.99197 1.21437 0.92481 0.98651 0.99019 1.21487 1.01871 0.93109 0.95614 1.21348 0.91979 1.00672 0.97198 1.21066 0.97066 0.95297 1.00142 1.19245 0.88045 0.96458 0.98945 1.67756 1.15569 1.18747 1.16054 0.94477 0.80493 0.97199 0.96310 0.92653 0.91807 0.89831 0.89704 0.90142 0.91513 0.74712 0.82470 0.79304 0.81256 0.81579 0.82604 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.78 13.70 21.65 0.30 -61.49 16 2 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 3 Si 1.13 53.01 29.92 68.60 2.05 55.06 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.34 -19.60 9.99 84.03 0.84 -18.76 16 8 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.75 -39.35 5.44 -343.47 -1.87 -41.22 16 10 C 0.17 7.26 4.18 86.38 0.36 7.62 16 11 C -0.10 -3.48 2.97 -10.07 -0.03 -3.51 16 12 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 13 C -0.11 -3.42 6.05 31.69 0.19 -3.23 16 14 C -0.11 -2.58 6.91 31.91 0.22 -2.35 16 15 C -0.12 -3.18 6.53 31.67 0.21 -2.98 16 16 C 0.15 4.54 3.23 45.72 0.15 4.69 16 17 H 0.09 2.78 7.57 -2.39 -0.02 2.76 16 18 N -0.70 -22.83 4.38 -441.55 -1.94 -24.76 16 19 C 0.57 18.55 7.81 86.91 0.68 19.23 16 20 O -0.56 -19.74 15.94 -3.72 -0.06 -19.80 16 21 C 0.09 2.75 6.75 42.30 0.29 3.04 16 22 C -0.14 -3.20 9.54 22.36 0.21 -2.99 16 23 C -0.04 -0.74 9.88 22.48 0.22 -0.52 16 24 C -0.10 -1.97 5.75 -21.22 -0.12 -2.09 16 25 C -0.10 -1.18 9.77 22.31 0.22 -0.96 16 26 C -0.10 -1.14 9.96 22.07 0.22 -0.92 16 27 C -0.09 -1.42 9.94 22.04 0.22 -1.20 16 28 C -0.12 -2.72 9.99 22.38 0.22 -2.50 16 29 C 0.10 2.55 6.61 40.47 0.27 2.82 16 30 N -0.47 -14.60 9.47 -177.77 -1.68 -16.28 16 31 H 0.24 15.47 6.77 -92.71 -0.63 14.84 16 32 H 0.36 19.49 6.36 -92.71 -0.59 18.90 16 33 H 0.01 0.46 7.46 -2.39 -0.02 0.44 16 34 H 0.02 0.82 7.08 -2.39 -0.02 0.81 16 35 H 0.05 1.89 7.77 -2.39 -0.02 1.88 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.76 8.05 -2.38 -0.02 1.74 16 41 H 0.41 14.26 5.19 -92.71 -0.48 13.77 16 42 H 0.16 3.21 7.60 -2.91 -0.02 3.19 16 43 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 44 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 45 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 46 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.13 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -77.12 384.19 1.71 -75.41 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: 0.07 Total: 43.17 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.83 Total: -10.10 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -5.19 Total: -143.75 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.06 Total: -19.80 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 2.05 Total: 55.06 kcal Total: -77.12 1.71 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568541899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.564 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds