Wall clock time and date at job start Sat Apr 11 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47051 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.47003 * 30.00048 * 3 2 1 6 6 H 1.48493 * 109.47057 * 150.00031 * 3 2 1 7 7 C 1.38805 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00336 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47059 * 185.01800 * 10 9 7 12 12 H 1.08990 * 109.87067 * 306.24701 * 11 10 9 13 13 C 1.54319 * 109.88340 * 67.42491 * 11 10 9 14 14 C 1.55154 * 102.94588 * 141.60841 * 13 11 10 15 15 C 1.54916 * 101.58103 * 324.49874 * 14 13 11 16 16 N 1.47023 * 109.87982 * 185.23358 * 11 10 9 17 17 C 1.34776 * 125.65007 * 61.60559 * 16 11 10 18 18 O 1.21273 * 119.99717 * 355.09130 * 17 16 11 19 19 C 1.50697 * 119.99987 * 175.09277 * 17 16 11 20 20 C 1.50697 * 109.47198 * 179.97438 * 19 17 16 21 21 C 1.36112 * 120.12864 * 265.00084 * 20 19 17 22 22 C 1.39306 * 121.06801 * 180.02562 * 21 20 19 23 23 C 1.36171 * 120.87148 * 359.97438 * 22 21 20 24 24 C 1.40396 * 119.61395 * 0.02562 * 23 22 21 25 25 C 1.40775 * 121.38720 * 180.02562 * 24 23 22 26 26 C 1.36570 * 118.14912 * 179.97438 * 25 24 23 27 27 C 1.39338 * 119.94359 * 359.97438 * 26 25 24 28 28 N 1.31085 * 121.75000 * 0.02562 * 27 26 25 29 29 C 1.33691 * 121.31760 * 359.70911 * 28 27 26 30 30 H 0.97000 * 119.99848 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99326 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.47200 * 65.01237 * 10 9 7 33 33 H 1.09006 * 109.47218 * 305.01470 * 10 9 7 34 34 H 1.09010 * 110.72405 * 23.24448 * 13 11 10 35 35 H 1.09004 * 110.71992 * 259.97321 * 13 11 10 36 36 H 1.08993 * 111.01242 * 206.42350 * 14 13 11 37 37 H 1.09007 * 111.00225 * 82.56587 * 14 13 11 38 38 H 1.08997 * 110.36533 * 155.84506 * 15 14 13 39 39 H 1.09000 * 110.36128 * 278.06221 * 15 14 13 40 40 H 1.09003 * 109.47203 * 300.00180 * 19 17 16 41 41 H 1.09001 * 109.47435 * 59.99858 * 19 17 16 42 42 H 1.08005 * 119.46137 * 0.02562 * 21 20 19 43 43 H 1.08000 * 119.56831 * 180.02562 * 22 21 20 44 44 H 1.08007 * 120.19566 * 179.97438 * 23 22 21 45 45 H 1.08000 * 120.92612 * 359.97438 * 25 24 23 46 46 H 1.08005 * 120.02886 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.12765 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0686 -4.8170 -0.1267 12 1 0.3065 -4.7398 0.6485 13 6 0.4079 -4.7940 -1.5211 14 6 0.3130 -6.2991 -1.8856 15 6 1.6152 -6.8542 -1.2564 16 7 1.7808 -6.0972 -0.0022 17 6 2.4712 -6.5100 1.0792 18 8 2.6170 -5.7661 2.0258 19 6 3.0621 -7.8959 1.1119 20 6 3.7784 -8.1058 2.4210 21 6 5.1186 -7.8852 2.5095 22 6 5.8005 -8.0736 3.7095 23 6 5.1436 -8.4840 4.8295 24 6 3.7609 -8.7213 4.7750 25 6 3.0446 -9.1459 5.9101 26 6 1.7013 -9.3565 5.7826 27 6 1.0784 -9.1498 4.5535 28 7 1.7484 -8.7544 3.4985 29 6 3.0643 -8.5252 3.5566 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6157 -3.7544 0.9309 33 1 2.7505 -3.6766 -0.8422 34 1 1.0356 -4.2627 -2.2367 35 1 -0.5846 -4.3461 -1.4702 36 1 0.3104 -6.4400 -2.9664 37 1 -0.5661 -6.7564 -1.4315 38 1 1.5111 -7.9186 -1.0461 39 1 2.4616 -6.6804 -1.9209 40 1 2.2654 -8.6330 1.0109 41 1 3.7683 -8.0094 0.2894 42 1 5.6621 -7.5587 1.6351 43 1 6.8641 -7.8909 3.7525 44 1 5.6832 -8.6270 5.7541 45 1 3.5435 -9.3008 6.8553 46 1 1.1220 -9.6821 6.6341 47 1 0.0155 -9.3207 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569549832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:30 Heat of formation + Delta-G solvation = 36.347142 kcal Electronic energy + Delta-G solvation = -28916.487577 eV Core-core repulsion = 25064.295936 eV Total energy + Delta-G solvation = -3852.191641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07730 -39.82786 -37.62739 -36.92461 -34.45778 -34.14638 -31.95698 -31.22970 -31.05336 -30.67733 -28.76752 -27.47057 -24.98380 -24.35672 -23.73145 -23.16517 -21.96349 -21.48023 -20.32819 -18.73962 -18.42453 -17.18919 -17.09354 -16.95256 -16.58563 -16.15038 -15.12718 -14.82979 -14.52642 -14.42551 -14.33418 -14.19347 -13.83081 -13.60785 -13.28780 -13.22208 -13.15886 -12.95152 -12.70076 -12.59634 -12.10429 -11.99987 -11.81415 -11.76473 -11.41931 -11.30429 -11.05625 -10.86129 -10.76909 -10.61623 -10.46113 -10.36461 -9.98181 -9.69032 -9.60111 -9.44755 -8.88873 -8.75261 -8.31212 -8.28361 -6.80613 -5.67605 -2.95132 0.24387 0.71008 1.83664 2.78348 2.96371 3.23926 3.49526 3.54497 3.57121 3.97566 4.17846 4.33716 4.55377 4.61784 4.66366 4.70527 4.72133 4.73540 4.88584 4.99861 5.04430 5.16023 5.17992 5.21491 5.29146 5.43133 5.47913 5.52889 5.64525 5.66408 5.69311 5.82299 5.87540 5.89164 5.92210 6.02087 6.14969 6.18721 6.24323 6.27557 6.29715 6.37349 6.50857 6.66974 6.72661 6.91893 7.14729 7.78510 7.80804 7.84050 8.49124 8.53527 9.62309 10.20258 10.55933 11.55647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.002870 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.197594 B = 9752.930223 C =10648.877377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.146 3.854 11 C 0.132 3.868 12 H 0.073 0.927 13 C -0.120 4.120 14 C -0.134 4.134 15 C 0.100 3.900 16 N -0.614 5.614 17 C 0.534 3.466 18 O -0.521 6.521 19 C -0.091 4.091 20 C -0.036 4.036 21 C -0.092 4.092 22 C -0.109 4.109 23 C -0.102 4.102 24 C -0.102 4.102 25 C -0.059 4.059 26 C -0.178 4.178 27 C 0.129 3.871 28 N -0.467 5.467 29 C 0.143 3.857 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -26.634 4.711 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.018 3.982 11 C 0.029 3.971 12 H 0.091 0.909 13 C -0.158 4.158 14 C -0.172 4.172 15 C -0.023 4.023 16 N -0.350 5.350 17 C 0.322 3.678 18 O -0.396 6.396 19 C -0.131 4.131 20 C -0.037 4.037 21 C -0.112 4.112 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.104 4.104 25 C -0.085 4.085 26 C -0.198 4.198 27 C -0.043 4.043 28 N -0.174 5.174 29 C 0.022 3.978 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.153 0.847 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.968 -25.977 4.448 27.023 hybrid contribution 0.505 0.909 0.871 1.356 sum 6.473 -25.068 5.318 26.431 Atomic orbital electron populations 1.69663 1.05043 1.25474 1.58287 1.24710 0.95537 0.97556 1.03353 0.86180 0.78692 0.83907 0.77412 1.21807 1.21801 1.20817 1.19219 0.90995 0.84082 1.41988 0.91336 1.42211 1.05731 0.99776 1.89596 1.20982 0.93401 0.85083 0.98784 1.21780 0.94489 0.83283 0.97524 0.90902 1.22656 1.02021 0.95225 0.95862 1.22795 0.96968 0.96703 1.00784 1.22307 0.98260 0.95925 0.85841 1.48506 1.52719 1.19359 1.14412 1.19934 0.78158 0.88293 0.81436 1.90758 1.58002 1.55820 1.35044 1.20525 1.01064 0.96121 0.95358 1.18962 0.93064 0.98322 0.93329 1.20791 0.93674 0.98197 0.98568 1.20870 1.00357 0.98895 0.92621 1.20946 0.92606 0.99556 0.98917 1.18800 0.95125 1.02023 0.94469 1.21437 0.94400 0.95062 0.97562 1.21866 0.95656 1.02787 0.99483 1.22948 1.00270 0.92931 0.88198 1.67982 1.07120 1.10972 1.31362 1.18594 0.89629 0.97279 0.92317 0.93633 0.78392 0.94771 0.96346 0.89991 0.89913 0.90097 0.90831 0.90922 0.91439 0.87303 0.88402 0.85265 0.85386 0.85353 0.84550 0.84660 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.27 13.06 55.49 0.72 -28.54 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.40 29.55 -169.99 -5.02 18.38 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.89 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.83 5.42 -59.91 -0.32 -20.15 16 10 C 0.15 3.36 5.66 -4.04 -0.02 3.33 16 11 C 0.13 2.45 2.95 -66.95 -0.20 2.26 16 12 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 13 C -0.12 -1.83 6.24 -24.90 -0.16 -1.99 16 14 C -0.13 -1.48 7.09 -24.58 -0.17 -1.66 16 15 C 0.10 1.11 6.74 -2.52 -0.02 1.09 16 16 N -0.61 -9.63 3.07 -163.02 -0.50 -10.13 16 17 C 0.53 9.01 7.66 -10.99 -0.08 8.92 16 18 O -0.52 -11.35 14.82 5.56 0.08 -11.27 16 19 C -0.09 -1.13 4.49 -29.04 -0.13 -1.26 16 20 C -0.04 -0.48 4.38 -104.51 -0.46 -0.94 16 21 C -0.09 -1.07 9.56 -39.95 -0.38 -1.45 16 22 C -0.11 -1.11 9.95 -39.93 -0.40 -1.51 16 23 C -0.10 -1.04 9.78 -39.51 -0.39 -1.42 16 24 C -0.10 -1.24 5.74 -106.80 -0.61 -1.85 16 25 C -0.06 -0.56 9.90 -39.23 -0.39 -0.95 16 26 C -0.18 -1.61 10.03 -39.77 -0.40 -2.01 16 27 C 0.13 1.41 11.15 -17.46 -0.19 1.22 16 28 N -0.47 -6.55 9.51 -10.97 -0.10 -6.65 16 29 C 0.14 2.03 6.58 -84.86 -0.56 1.47 16 30 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 31 H 0.38 10.73 7.61 -40.82 -0.31 10.42 16 32 H 0.03 0.89 6.55 -51.93 -0.34 0.55 16 33 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 34 H 0.08 1.34 7.76 -51.92 -0.40 0.94 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.63 7.47 -51.93 -0.39 0.24 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.11 1.25 7.53 -51.93 -0.39 0.85 16 41 H 0.10 0.92 8.04 -51.93 -0.42 0.50 16 42 H 0.13 1.23 8.04 -52.48 -0.42 0.81 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 47 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -38.03 388.29 -10.96 -48.99 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.86 Total: 7.90 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.80 Total: -4.37 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -0.20 Total: -65.48 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.03 -10.96 -48.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569549832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.336 kcal (2) G-P(sol) polarization free energy of solvation -38.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds