Wall clock time and date at job start Sat Apr 11 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47051 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.47003 * 30.00048 * 3 2 1 6 6 H 1.48493 * 109.47057 * 150.00031 * 3 2 1 7 7 C 1.38805 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00328 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00336 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47059 * 185.01800 * 10 9 7 12 12 H 1.08990 * 109.87067 * 306.24701 * 11 10 9 13 13 C 1.54319 * 109.88340 * 67.42491 * 11 10 9 14 14 C 1.55154 * 102.94588 * 141.60841 * 13 11 10 15 15 C 1.54916 * 101.58103 * 324.49874 * 14 13 11 16 16 N 1.47023 * 109.87982 * 185.23358 * 11 10 9 17 17 C 1.34776 * 125.65007 * 61.60559 * 16 11 10 18 18 O 1.21273 * 119.99717 * 355.09130 * 17 16 11 19 19 C 1.50697 * 119.99987 * 175.09277 * 17 16 11 20 20 C 1.50697 * 109.47198 * 179.97438 * 19 17 16 21 21 C 1.36112 * 120.12864 * 265.00084 * 20 19 17 22 22 C 1.39306 * 121.06801 * 180.02562 * 21 20 19 23 23 C 1.36171 * 120.87148 * 359.97438 * 22 21 20 24 24 C 1.40396 * 119.61395 * 0.02562 * 23 22 21 25 25 C 1.40775 * 121.38720 * 180.02562 * 24 23 22 26 26 C 1.36570 * 118.14912 * 179.97438 * 25 24 23 27 27 C 1.39338 * 119.94359 * 359.97438 * 26 25 24 28 28 N 1.31085 * 121.75000 * 0.02562 * 27 26 25 29 29 C 1.33691 * 121.31760 * 359.70911 * 28 27 26 30 30 H 0.97000 * 119.99848 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99326 * 0.02562 * 9 7 2 32 32 H 1.08991 * 109.47200 * 65.01237 * 10 9 7 33 33 H 1.09006 * 109.47218 * 305.01470 * 10 9 7 34 34 H 1.09010 * 110.72405 * 23.24448 * 13 11 10 35 35 H 1.09004 * 110.71992 * 259.97321 * 13 11 10 36 36 H 1.08993 * 111.01242 * 206.42350 * 14 13 11 37 37 H 1.09007 * 111.00225 * 82.56587 * 14 13 11 38 38 H 1.08997 * 110.36533 * 155.84506 * 15 14 13 39 39 H 1.09000 * 110.36128 * 278.06221 * 15 14 13 40 40 H 1.09003 * 109.47203 * 300.00180 * 19 17 16 41 41 H 1.09001 * 109.47435 * 59.99858 * 19 17 16 42 42 H 1.08005 * 119.46137 * 0.02562 * 21 20 19 43 43 H 1.08000 * 119.56831 * 180.02562 * 22 21 20 44 44 H 1.08007 * 120.19566 * 179.97438 * 23 22 21 45 45 H 1.08000 * 120.92612 * 359.97438 * 25 24 23 46 46 H 1.08005 * 120.02886 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.12765 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0686 -4.8170 -0.1267 12 1 0.3065 -4.7398 0.6485 13 6 0.4079 -4.7940 -1.5211 14 6 0.3130 -6.2991 -1.8856 15 6 1.6152 -6.8542 -1.2564 16 7 1.7808 -6.0972 -0.0022 17 6 2.4712 -6.5100 1.0792 18 8 2.6170 -5.7661 2.0258 19 6 3.0621 -7.8959 1.1119 20 6 3.7784 -8.1058 2.4210 21 6 5.1186 -7.8852 2.5095 22 6 5.8005 -8.0736 3.7095 23 6 5.1436 -8.4840 4.8295 24 6 3.7609 -8.7213 4.7750 25 6 3.0446 -9.1459 5.9101 26 6 1.7013 -9.3565 5.7826 27 6 1.0784 -9.1498 4.5535 28 7 1.7484 -8.7544 3.4985 29 6 3.0643 -8.5252 3.5566 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6157 -3.7544 0.9309 33 1 2.7505 -3.6766 -0.8422 34 1 1.0356 -4.2627 -2.2367 35 1 -0.5846 -4.3461 -1.4702 36 1 0.3104 -6.4400 -2.9664 37 1 -0.5661 -6.7564 -1.4315 38 1 1.5111 -7.9186 -1.0461 39 1 2.4616 -6.6804 -1.9209 40 1 2.2654 -8.6330 1.0109 41 1 3.7683 -8.0094 0.2894 42 1 5.6621 -7.5587 1.6351 43 1 6.8641 -7.8909 3.7525 44 1 5.6832 -8.6270 5.7541 45 1 3.5435 -9.3008 6.8553 46 1 1.1220 -9.6821 6.6341 47 1 0.0155 -9.3207 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569549832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:29 Heat of formation + Delta-G solvation = 11.412230 kcal Electronic energy + Delta-G solvation = -28917.568836 eV Core-core repulsion = 25064.295936 eV Total energy + Delta-G solvation = -3853.272900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92807 -41.06273 -38.77633 -37.91629 -36.44074 -35.05758 -33.57960 -32.77171 -32.01657 -31.45570 -30.39013 -28.45981 -26.75173 -25.20060 -24.77694 -24.51252 -23.56435 -22.41580 -21.54010 -20.14440 -19.19175 -19.09362 -18.10279 -17.89945 -17.75770 -17.36473 -16.49959 -16.26017 -15.79107 -15.49606 -15.36907 -15.26782 -15.05758 -15.02858 -14.88027 -14.70786 -14.12376 -13.94308 -13.80327 -13.72931 -13.55209 -13.13489 -12.93933 -12.87738 -12.71864 -12.65254 -12.56662 -12.22929 -12.14794 -12.04704 -11.93032 -11.80725 -11.59430 -11.44731 -11.03732 -10.77424 -10.41546 -9.69626 -9.64349 -9.11884 -9.06652 -7.99932 -5.30216 -0.53689 -0.09497 1.01768 1.42464 1.45861 1.54478 1.68893 1.92161 2.11823 2.53318 3.12890 3.32250 3.39561 3.52392 3.58696 3.66426 3.80486 3.88880 3.92657 4.01457 4.06764 4.09874 4.15509 4.27664 4.29703 4.35419 4.37904 4.44101 4.52811 4.55862 4.61111 4.73438 4.83617 4.89556 4.95382 5.03470 5.08044 5.13007 5.13918 5.14482 5.16358 5.35248 5.40260 5.45922 5.46769 5.49613 5.63556 5.96278 6.21304 6.60843 6.99095 7.23253 7.27553 7.98761 8.26737 9.23500 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.002870 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.197594 B = 9752.930223 C =10648.877377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.737 5.737 10 C 0.155 3.845 11 C 0.139 3.861 12 H 0.042 0.958 13 C -0.116 4.116 14 C -0.119 4.119 15 C 0.094 3.906 16 N -0.614 5.614 17 C 0.527 3.473 18 O -0.582 6.582 19 C -0.075 4.075 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.061 4.061 26 C -0.178 4.178 27 C 0.116 3.884 28 N -0.505 5.505 29 C 0.111 3.889 30 H 0.254 0.746 31 H 0.375 0.625 32 H 0.000 1.000 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.170 0.830 46 H 0.171 0.829 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 -28.397 4.447 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.380 5.380 10 C 0.027 3.973 11 C 0.034 3.966 12 H 0.060 0.940 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.027 4.027 16 N -0.348 5.348 17 C 0.317 3.683 18 O -0.461 6.461 19 C -0.114 4.114 20 C -0.071 4.071 21 C -0.119 4.119 22 C -0.139 4.139 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.086 4.086 26 C -0.198 4.198 27 C -0.057 4.057 28 N -0.213 5.213 29 C -0.010 4.010 30 H 0.063 0.937 31 H 0.207 0.793 32 H 0.018 0.982 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.162 0.838 43 H 0.174 0.826 44 H 0.178 0.822 45 H 0.188 0.812 46 H 0.188 0.812 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.103 -27.797 4.140 28.987 hybrid contribution 0.143 1.431 1.043 1.776 sum 7.246 -26.366 5.184 27.830 Atomic orbital electron populations 1.69820 1.06538 1.26306 1.59014 1.25601 0.96540 1.01088 1.03133 0.85080 0.77457 0.79032 0.77807 1.20528 1.21665 1.20027 1.19557 0.91215 0.85396 1.42154 0.91495 1.42339 1.05470 1.00727 1.89476 1.20935 0.94067 0.85424 0.96861 1.21491 0.92916 0.83409 0.98749 0.94014 1.22558 1.00752 0.98807 0.93312 1.22810 0.97315 0.92589 1.02925 1.22685 0.98988 0.97209 0.83825 1.48649 1.51790 1.18468 1.15940 1.20847 0.77364 0.89517 0.80568 1.90718 1.60303 1.57798 1.37317 1.20484 1.01729 0.92745 0.96487 1.19210 0.93977 1.00112 0.93780 1.21129 0.93424 0.97433 0.99880 1.21247 1.01789 0.98677 0.92170 1.21366 0.92088 0.98242 1.00200 1.19208 0.96309 1.02743 0.94793 1.21892 0.94748 0.93919 0.98091 1.22237 0.95915 1.01857 0.99752 1.23504 1.01378 0.92147 0.88632 1.67944 1.07591 1.12730 1.33044 1.18955 0.90116 0.98347 0.93546 0.93730 0.79294 0.98225 0.96029 0.90980 0.90776 0.86788 0.89976 0.87499 0.89629 0.86384 0.85155 0.83821 0.82614 0.82246 0.81209 0.81179 0.80513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.98 48.60 29.55 68.60 2.03 50.62 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.25 -15.42 9.99 84.03 0.84 -14.58 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -41.99 5.42 -343.46 -1.86 -43.85 16 10 C 0.15 7.52 5.66 86.38 0.49 8.01 16 11 C 0.14 5.38 2.95 45.34 0.13 5.51 16 12 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 13 C -0.12 -3.57 6.24 31.78 0.20 -3.37 16 14 C -0.12 -2.31 7.09 31.99 0.23 -2.09 16 15 C 0.09 1.85 6.74 86.86 0.59 2.43 16 16 N -0.61 -19.35 3.07 -788.05 -2.42 -21.77 16 17 C 0.53 18.29 7.66 87.66 0.67 18.96 16 18 O -0.58 -27.01 14.82 -3.01 -0.04 -27.06 16 19 C -0.08 -1.84 4.49 29.10 0.13 -1.71 16 20 C -0.07 -1.90 4.38 -19.79 -0.09 -1.99 16 21 C -0.10 -2.28 9.56 22.03 0.21 -2.07 16 22 C -0.12 -2.33 9.95 22.05 0.22 -2.11 16 23 C -0.10 -1.92 9.78 22.31 0.22 -1.71 16 24 C -0.13 -3.06 5.74 -21.28 -0.12 -3.19 16 25 C -0.06 -1.07 9.90 22.50 0.22 -0.85 16 26 C -0.18 -2.97 10.03 22.14 0.22 -2.75 16 27 C 0.12 2.52 11.15 85.07 0.95 3.47 16 28 N -0.50 -14.56 9.51 -188.63 -1.79 -16.35 16 29 C 0.11 3.22 6.58 40.28 0.27 3.49 16 30 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.37 22.15 7.61 -92.71 -0.71 21.44 16 32 H 0.00 -0.01 6.55 -2.39 -0.02 -0.03 16 33 H 0.02 1.03 8.02 -2.38 -0.02 1.01 16 34 H 0.07 2.36 7.76 -2.38 -0.02 2.34 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.11 1.44 7.47 -2.39 -0.02 1.43 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 2.62 7.53 -2.39 -0.02 2.60 16 41 H 0.13 2.21 8.04 -2.39 -0.02 2.19 16 42 H 0.14 2.65 8.04 -2.91 -0.02 2.63 16 43 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 47 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -88.49 388.29 2.31 -86.18 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.28 Total: 32.04 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.84 Total: 1.59 kcal Atomic # 7 Polarization: -137.59 SS G_CDS: -5.79 Total: -143.38 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.06 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.62 kcal Total: -88.49 2.31 -86.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569549832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.594 kcal (2) G-P(sol) polarization free energy of solvation -88.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds