Wall clock time and date at job start Sat Apr 11 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48500 * 109.47223 * 270.00231 * 3 2 1 5 5 H 1.48503 * 109.47044 * 30.00419 * 3 2 1 6 6 H 1.48493 * 109.47091 * 150.00138 * 3 2 1 7 7 C 1.38812 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00004 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00215 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47272 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46796 * 179.97438 * 11 10 9 13 13 H 1.08993 * 110.88842 * 302.57775 * 12 11 10 14 14 C 1.55160 * 110.99920 * 178.65557 * 12 11 10 15 15 C 1.54334 * 102.94068 * 206.42653 * 14 12 11 16 16 N 1.47019 * 107.26976 * 22.19118 * 15 14 12 17 17 C 1.34777 * 125.65093 * 181.09253 * 16 15 14 18 18 O 1.21565 * 120.00450 * 174.30601 * 17 16 15 19 19 C 1.47761 * 119.99450 * 354.31319 * 17 16 15 20 20 C 1.40604 * 120.26130 * 186.72010 * 19 17 16 21 21 N 1.30800 * 121.52978 * 179.75998 * 20 19 17 22 22 C 1.33823 * 121.72022 * 0.50295 * 21 20 19 23 23 C 1.40524 * 120.81006 * 179.72918 * 22 21 20 24 24 C 1.36128 * 119.81575 * 180.02562 * 23 22 21 25 25 C 1.39335 * 121.08625 * 359.97438 * 24 23 22 26 26 C 1.36145 * 120.83669 * 359.97438 * 25 24 23 27 27 C 1.40541 * 119.61862 * 0.02562 * 26 25 24 28 28 C 1.39007 * 120.26998 * 7.00185 * 19 17 16 29 29 C 1.47427 * 108.70522 * 1.06132 * 16 15 14 30 30 H 0.96995 * 120.00366 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99840 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46816 * 59.99842 * 10 9 7 33 33 H 1.08994 * 109.47021 * 300.00490 * 10 9 7 34 34 H 1.09002 * 109.46767 * 60.00500 * 11 10 9 35 35 H 1.08995 * 109.47601 * 300.00804 * 11 10 9 36 36 H 1.09000 * 110.72129 * 324.78565 * 14 12 11 37 37 H 1.08994 * 110.71911 * 87.89012 * 14 12 11 38 38 H 1.08993 * 109.88110 * 141.60887 * 15 14 12 39 39 H 1.09003 * 109.87869 * 262.62429 * 15 14 12 40 40 H 1.07996 * 119.23296 * 0.02562 * 20 19 17 41 41 H 1.08005 * 120.09190 * 0.02695 * 23 22 21 42 42 H 1.08002 * 119.45851 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.58515 * 180.02562 * 25 24 23 44 44 H 1.08005 * 120.19352 * 180.02562 * 26 25 24 45 45 H 1.07997 * 121.01626 * 359.95179 * 28 19 17 46 46 H 1.09000 * 110.36815 * 217.03051 * 29 16 15 47 47 H 1.09003 * 110.36858 * 94.70778 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6165 -2.1911 0.0000 12 6 6.3814 -3.5161 0.0006 13 1 6.1008 -4.1264 0.8590 14 6 7.9136 -3.2736 -0.0333 15 6 8.4522 -4.5580 -0.6982 16 7 7.3451 -5.1510 -1.4625 17 6 7.4044 -6.2959 -2.1711 18 8 6.3978 -6.7479 -2.6814 19 6 8.6930 -7.0019 -2.3276 20 6 8.7915 -8.1163 -3.1792 21 7 9.9206 -8.7568 -3.3398 22 6 11.0349 -8.3908 -2.6954 23 6 12.2366 -9.0962 -2.8779 24 6 13.3580 -8.7066 -2.2118 25 6 13.3381 -7.6143 -1.3470 26 6 12.1937 -6.9051 -1.1447 27 6 11.0169 -7.2791 -1.8159 28 6 9.8161 -6.5732 -1.6297 29 6 6.1590 -4.2863 -1.3249 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 0.0004 32 1 3.8492 -3.0421 -0.8902 33 1 3.8486 -3.0425 0.8897 34 1 5.8797 -1.6196 0.8901 35 1 5.8798 -1.6194 -0.8899 36 1 8.1522 -2.3978 -0.6369 37 1 8.3091 -3.1638 0.9764 38 1 9.2752 -4.3112 -1.3688 39 1 8.7935 -5.2560 0.0663 40 1 7.9156 -8.4487 -3.7165 41 1 12.2703 -9.9450 -3.5449 42 1 14.2783 -9.2531 -2.3561 43 1 14.2421 -7.3261 -0.8312 44 1 12.1902 -6.0599 -0.4723 45 1 9.7678 -5.7225 -0.9661 46 1 5.2538 -4.8906 -1.2652 47 1 6.0973 -3.5909 -2.1620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570006038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:37 Heat of formation + Delta-G solvation = 55.751445 kcal Electronic energy + Delta-G solvation = -27856.811586 eV Core-core repulsion = 24005.461378 eV Total energy + Delta-G solvation = -3851.350207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53010 -40.19685 -38.17207 -37.20719 -35.52662 -34.25948 -32.94129 -31.43114 -31.02165 -30.58274 -29.97077 -27.55162 -25.69477 -24.62025 -23.77957 -23.23159 -22.41438 -21.28742 -20.58804 -20.18872 -18.93640 -17.72013 -17.58641 -17.26999 -16.46397 -16.38733 -15.78047 -15.18434 -15.04333 -14.73645 -14.59097 -14.53464 -14.15535 -14.09637 -13.89633 -13.74986 -13.41785 -13.07559 -12.87776 -12.74242 -12.31519 -12.24689 -12.20108 -11.99031 -11.86673 -11.56014 -11.38075 -11.02122 -10.92057 -10.78469 -10.60548 -10.49003 -10.36250 -10.11523 -9.79442 -9.58539 -9.30236 -8.93094 -8.89229 -8.79457 -7.23150 -5.76051 -3.11896 -0.26057 0.18792 1.37779 2.14730 2.58598 2.86873 3.36309 3.38853 3.44579 3.64946 3.74600 3.99184 4.01451 4.19153 4.26422 4.31777 4.39194 4.49423 4.57701 4.59029 4.63935 4.73737 4.81309 4.96009 5.01119 5.14338 5.24041 5.28501 5.29783 5.41327 5.45929 5.54254 5.57692 5.59881 5.63860 5.75811 5.78628 5.84119 5.89195 5.91871 5.99419 6.05728 6.07764 6.21225 6.31041 6.70942 6.73945 7.14578 7.44618 7.82713 8.00566 8.42837 9.21953 9.94068 10.13589 11.42396 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027210 B = 0.001906 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.791792 B =14687.143441 C =15494.703143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.154 3.846 11 C -0.119 4.119 12 C -0.094 4.094 13 H 0.089 0.911 14 C -0.131 4.131 15 C 0.086 3.914 16 N -0.612 5.612 17 C 0.576 3.424 18 O -0.526 6.526 19 C -0.182 4.182 20 C 0.185 3.815 21 N -0.478 5.478 22 C 0.140 3.860 23 C -0.098 4.098 24 C -0.093 4.093 25 C -0.120 4.120 26 C -0.088 4.088 27 C -0.113 4.113 28 C -0.053 4.053 29 C 0.109 3.891 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.173 0.827 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.176 0.824 46 H 0.088 0.912 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.745 -15.204 -1.443 36.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.157 4.157 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.169 4.169 15 C -0.036 4.036 16 N -0.345 5.345 17 C 0.365 3.635 18 O -0.403 6.403 19 C -0.187 4.187 20 C 0.011 3.989 21 N -0.185 5.185 22 C 0.019 3.981 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.138 4.138 26 C -0.107 4.107 27 C -0.115 4.115 28 C -0.079 4.079 29 C -0.013 4.013 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.190 0.810 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.193 0.807 46 H 0.106 0.894 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 32.110 -16.357 -2.325 36.112 hybrid contribution 0.538 1.945 0.571 2.098 sum 32.648 -14.412 -1.754 35.731 Atomic orbital electron populations 1.69703 1.05103 1.25802 1.57598 1.24693 0.95263 0.97237 1.02094 0.86521 0.79137 0.84952 0.77739 1.21091 1.21741 1.20392 1.19079 0.80672 0.94782 1.42934 0.89211 1.42708 1.04090 1.02247 1.91238 1.20670 0.88463 0.89381 0.98786 1.21735 0.96364 0.95100 1.02491 1.22343 0.94101 0.97498 0.97448 0.89304 1.22803 0.95968 0.96478 1.01624 1.22559 0.90356 0.95664 0.95031 1.48377 1.13927 1.22881 1.49333 1.17645 0.87931 0.79410 0.78545 1.90832 1.35836 1.65327 1.48345 1.20954 0.94564 1.00286 1.02903 1.23123 0.95600 0.88410 0.91734 1.68095 0.98469 1.29445 1.22451 1.19115 0.93181 0.92824 0.93007 1.20866 0.90561 1.00017 1.00239 1.21007 0.98398 0.96422 0.95420 1.20966 0.98474 0.95722 0.98667 1.21062 0.91584 0.99631 0.98413 1.18856 0.95033 0.97611 0.99993 1.23499 0.90653 0.98220 0.95495 1.22493 0.88306 0.92657 0.97811 0.93067 0.80735 0.95352 0.95560 0.91250 0.91560 0.89942 0.89537 0.90527 0.90448 0.80962 0.84462 0.85040 0.85194 0.84887 0.80734 0.89373 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.04 27.74 -169.99 -4.71 17.33 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.76 -17.89 5.41 -59.91 -0.32 -18.21 16 10 C 0.15 2.85 6.11 -4.04 -0.02 2.82 16 11 C -0.12 -1.56 4.84 -26.73 -0.13 -1.69 16 12 C -0.09 -0.97 3.07 -88.47 -0.27 -1.24 16 13 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.13 -0.91 6.42 -24.89 -0.16 -1.07 16 15 C 0.09 0.59 4.87 -3.06 -0.01 0.57 16 16 N -0.61 -6.55 3.33 -173.65 -0.58 -7.13 16 17 C 0.58 7.28 7.81 -12.37 -0.10 7.19 16 18 O -0.53 -8.56 16.59 5.31 0.09 -8.47 16 19 C -0.18 -1.93 5.88 -104.83 -0.62 -2.54 16 20 C 0.19 2.05 10.73 -17.10 -0.18 1.87 16 21 N -0.48 -5.40 10.30 -10.67 -0.11 -5.51 16 22 C 0.14 1.38 6.61 -84.79 -0.56 0.82 16 23 C -0.10 -0.75 9.97 -39.48 -0.39 -1.14 16 24 C -0.09 -0.50 9.94 -39.93 -0.40 -0.90 16 25 C -0.12 -0.59 9.96 -39.93 -0.40 -0.99 16 26 C -0.09 -0.51 9.77 -39.47 -0.39 -0.89 16 27 C -0.11 -0.95 5.74 -106.82 -0.61 -1.56 16 28 C -0.05 -0.43 8.46 -38.43 -0.32 -0.76 16 29 C 0.11 1.29 5.59 -2.53 -0.01 1.28 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.36 8.19 5.53 -40.82 -0.23 7.97 16 32 H 0.03 0.54 7.46 -51.93 -0.39 0.15 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.41 6.74 -51.93 -0.35 0.06 16 39 H 0.08 0.40 6.74 -51.93 -0.35 0.05 16 40 H 0.17 1.80 7.64 -52.49 -0.40 1.40 16 41 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 43 H 0.13 0.32 8.06 -52.49 -0.42 -0.11 16 44 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 45 H 0.18 0.96 2.85 -55.09 -0.16 0.80 16 46 H 0.09 1.21 7.91 -51.93 -0.41 0.80 16 47 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -36.11 380.00 -10.48 -46.59 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.51 Total: 3.92 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -4.84 Total: -5.41 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.24 Total: -59.68 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.11 -10.48 -46.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570006038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.343 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds