Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48500 * 109.47223 * 270.00231 * 3 2 1 5 5 H 1.48503 * 109.47044 * 30.00419 * 3 2 1 6 6 H 1.48493 * 109.47091 * 150.00138 * 3 2 1 7 7 C 1.38812 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00004 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00215 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47272 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46796 * 179.97438 * 11 10 9 13 13 H 1.08993 * 110.88842 * 302.57775 * 12 11 10 14 14 C 1.55160 * 110.99920 * 178.65557 * 12 11 10 15 15 C 1.54334 * 102.94068 * 206.42653 * 14 12 11 16 16 N 1.47019 * 107.26976 * 22.19118 * 15 14 12 17 17 C 1.34777 * 125.65093 * 181.09253 * 16 15 14 18 18 O 1.21565 * 120.00450 * 174.30601 * 17 16 15 19 19 C 1.47761 * 119.99450 * 354.31319 * 17 16 15 20 20 C 1.40604 * 120.26130 * 186.72010 * 19 17 16 21 21 N 1.30800 * 121.52978 * 179.75998 * 20 19 17 22 22 C 1.33823 * 121.72022 * 0.50295 * 21 20 19 23 23 C 1.40524 * 120.81006 * 179.72918 * 22 21 20 24 24 C 1.36128 * 119.81575 * 180.02562 * 23 22 21 25 25 C 1.39335 * 121.08625 * 359.97438 * 24 23 22 26 26 C 1.36145 * 120.83669 * 359.97438 * 25 24 23 27 27 C 1.40541 * 119.61862 * 0.02562 * 26 25 24 28 28 C 1.39007 * 120.26998 * 7.00185 * 19 17 16 29 29 C 1.47427 * 108.70522 * 1.06132 * 16 15 14 30 30 H 0.96995 * 120.00366 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99840 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46816 * 59.99842 * 10 9 7 33 33 H 1.08994 * 109.47021 * 300.00490 * 10 9 7 34 34 H 1.09002 * 109.46767 * 60.00500 * 11 10 9 35 35 H 1.08995 * 109.47601 * 300.00804 * 11 10 9 36 36 H 1.09000 * 110.72129 * 324.78565 * 14 12 11 37 37 H 1.08994 * 110.71911 * 87.89012 * 14 12 11 38 38 H 1.08993 * 109.88110 * 141.60887 * 15 14 12 39 39 H 1.09003 * 109.87869 * 262.62429 * 15 14 12 40 40 H 1.07996 * 119.23296 * 0.02562 * 20 19 17 41 41 H 1.08005 * 120.09190 * 0.02695 * 23 22 21 42 42 H 1.08002 * 119.45851 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.58515 * 180.02562 * 25 24 23 44 44 H 1.08005 * 120.19352 * 180.02562 * 26 25 24 45 45 H 1.07997 * 121.01626 * 359.95179 * 28 19 17 46 46 H 1.09000 * 110.36815 * 217.03051 * 29 16 15 47 47 H 1.09003 * 110.36858 * 94.70778 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.6165 -2.1911 0.0000 12 6 6.3814 -3.5161 0.0006 13 1 6.1008 -4.1264 0.8590 14 6 7.9136 -3.2736 -0.0333 15 6 8.4522 -4.5580 -0.6982 16 7 7.3451 -5.1510 -1.4625 17 6 7.4044 -6.2959 -2.1711 18 8 6.3978 -6.7479 -2.6814 19 6 8.6930 -7.0019 -2.3276 20 6 8.7915 -8.1163 -3.1792 21 7 9.9206 -8.7568 -3.3398 22 6 11.0349 -8.3908 -2.6954 23 6 12.2366 -9.0962 -2.8779 24 6 13.3580 -8.7066 -2.2118 25 6 13.3381 -7.6143 -1.3470 26 6 12.1937 -6.9051 -1.1447 27 6 11.0169 -7.2791 -1.8159 28 6 9.8161 -6.5732 -1.6297 29 6 6.1590 -4.2863 -1.3249 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 0.0004 32 1 3.8492 -3.0421 -0.8902 33 1 3.8486 -3.0425 0.8897 34 1 5.8797 -1.6196 0.8901 35 1 5.8798 -1.6194 -0.8899 36 1 8.1522 -2.3978 -0.6369 37 1 8.3091 -3.1638 0.9764 38 1 9.2752 -4.3112 -1.3688 39 1 8.7935 -5.2560 0.0663 40 1 7.9156 -8.4487 -3.7165 41 1 12.2703 -9.9450 -3.5449 42 1 14.2783 -9.2531 -2.3561 43 1 14.2421 -7.3261 -0.8312 44 1 12.1902 -6.0599 -0.4723 45 1 9.7678 -5.7225 -0.9661 46 1 5.2538 -4.8906 -1.2652 47 1 6.0973 -3.5909 -2.1620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570006038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = 31.503809 kcal Electronic energy + Delta-G solvation = -27857.863042 eV Core-core repulsion = 24005.461378 eV Total energy + Delta-G solvation = -3852.401664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21392 -40.96019 -39.05675 -37.85134 -37.07579 -35.21666 -34.21776 -33.01761 -31.73317 -31.13891 -30.98449 -28.76054 -26.55912 -25.58139 -24.78506 -24.14888 -23.22122 -22.70301 -21.38950 -21.07791 -19.66818 -19.53151 -18.35771 -18.02117 -17.27835 -17.11268 -16.58823 -16.55188 -16.07135 -15.78924 -15.52907 -15.43068 -15.13162 -15.02321 -14.81927 -14.53021 -14.48869 -14.36507 -13.99530 -13.80008 -13.66272 -13.07097 -12.89221 -12.81592 -12.76897 -12.70531 -12.43237 -12.34712 -12.04772 -11.85646 -11.74299 -11.69252 -11.49974 -11.44706 -11.34615 -10.96230 -10.53093 -9.98089 -9.72065 -9.31616 -9.30604 -8.03389 -5.38000 -0.84698 -0.44509 0.82394 1.37671 1.43574 1.44477 1.50954 1.75051 2.14623 2.49058 3.03364 3.08289 3.27521 3.29785 3.41571 3.53715 3.58578 3.66057 3.73950 3.81628 3.98250 4.00389 4.18939 4.23679 4.31113 4.31982 4.39546 4.46352 4.49748 4.55473 4.65221 4.68487 4.72531 4.80361 4.89548 4.93518 4.95905 5.05664 5.12324 5.15220 5.26371 5.34885 5.36170 5.41169 5.46863 5.47430 5.74543 5.85330 6.20492 6.31415 6.75278 6.91717 7.07786 7.83213 8.04257 9.18349 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027210 B = 0.001906 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.791792 B =14687.143441 C =15494.703143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.243 1.243 7 C -0.242 4.242 8 H 0.048 0.952 9 N -0.758 5.758 10 C 0.147 3.853 11 C -0.104 4.104 12 C -0.087 4.087 13 H 0.090 0.910 14 C -0.117 4.117 15 C 0.076 3.924 16 N -0.609 5.609 17 C 0.572 3.428 18 O -0.582 6.582 19 C -0.203 4.203 20 C 0.168 3.832 21 N -0.502 5.502 22 C 0.113 3.887 23 C -0.127 4.127 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.084 4.084 27 C -0.127 4.127 28 C -0.030 4.030 29 C 0.105 3.895 30 H 0.258 0.742 31 H 0.369 0.631 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.160 0.840 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.170 0.830 45 H 0.208 0.792 46 H 0.054 0.946 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.718 -13.120 0.673 40.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.261 4.261 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.373 4.373 8 H 0.066 0.934 9 N -0.405 5.405 10 C 0.021 3.979 11 C -0.142 4.142 12 C -0.107 4.107 13 H 0.108 0.892 14 C -0.154 4.154 15 C -0.045 4.045 16 N -0.341 5.341 17 C 0.362 3.638 18 O -0.463 6.463 19 C -0.209 4.209 20 C -0.006 4.006 21 N -0.210 5.210 22 C -0.008 4.008 23 C -0.145 4.145 24 C -0.096 4.096 25 C -0.135 4.135 26 C -0.103 4.103 27 C -0.129 4.129 28 C -0.055 4.055 29 C -0.018 4.018 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.177 0.823 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.183 0.817 44 H 0.187 0.813 45 H 0.224 0.776 46 H 0.073 0.927 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 38.167 -14.285 -0.185 40.753 hybrid contribution -1.224 1.142 -0.077 1.675 sum 36.943 -13.143 -0.262 39.212 Atomic orbital electron populations 1.69912 1.07406 1.26857 1.59481 1.25659 0.96269 1.01807 1.02315 0.85278 0.78830 0.78678 0.78191 1.20384 1.22207 1.16712 1.19049 0.83089 0.93359 1.41832 0.93351 1.42693 1.02341 1.04413 1.91004 1.20882 0.92094 0.87211 0.97683 1.21599 0.92075 0.96921 1.03583 1.22228 0.96828 0.95565 0.96055 0.89204 1.22815 0.92316 0.96678 1.03641 1.22949 0.89653 0.96128 0.95761 1.48429 1.14742 1.22055 1.48896 1.18020 0.88068 0.79711 0.78023 1.90790 1.37751 1.66993 1.50808 1.20707 0.94510 1.00825 1.04826 1.23002 0.95537 0.89391 0.92689 1.68042 0.99077 1.30230 1.23647 1.19574 0.93272 0.94159 0.93756 1.21032 0.90862 1.00770 1.01854 1.21437 0.98415 0.96121 0.93650 1.21447 0.99557 0.94709 0.97818 1.21490 0.90401 1.00447 0.97939 1.19126 0.96286 0.97269 1.00252 1.23824 0.89398 0.98130 0.94138 1.22411 0.87966 0.92461 0.98924 0.93294 0.79769 0.96742 0.96223 0.89628 0.90813 0.88911 0.86489 0.87953 0.87863 0.82305 0.84585 0.82173 0.81697 0.81278 0.77628 0.92733 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.53 13.97 21.65 0.30 -64.23 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.96 45.12 27.74 68.60 1.90 47.03 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.24 -9.89 6.52 99.48 0.65 -9.25 16 7 C -0.24 -14.25 10.47 84.03 0.88 -13.37 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 9 N -0.76 -35.45 5.41 -343.46 -1.86 -37.31 16 10 C 0.15 5.46 6.11 86.38 0.53 5.98 16 11 C -0.10 -2.47 4.84 30.59 0.15 -2.32 16 12 C -0.09 -1.58 3.07 -9.40 -0.03 -1.61 16 13 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 14 C -0.12 -1.05 6.42 31.79 0.20 -0.84 16 15 C 0.08 0.71 4.87 86.73 0.42 1.13 16 16 N -0.61 -12.60 3.33 -821.59 -2.73 -15.34 16 17 C 0.57 15.19 7.81 86.76 0.68 15.87 16 18 O -0.58 -20.96 16.59 -3.92 -0.07 -21.02 16 19 C -0.20 -4.42 5.88 -20.00 -0.12 -4.54 16 20 C 0.17 4.13 10.73 85.42 0.92 5.04 16 21 N -0.50 -12.21 10.30 -187.68 -1.93 -14.15 16 22 C 0.11 2.20 6.61 40.27 0.27 2.46 16 23 C -0.13 -1.80 9.97 22.34 0.22 -1.57 16 24 C -0.08 -0.56 9.94 22.04 0.22 -0.34 16 25 C -0.12 -0.57 9.96 22.05 0.22 -0.35 16 26 C -0.08 -0.56 9.77 22.34 0.22 -0.34 16 27 C -0.13 -1.82 5.74 -21.29 -0.12 -1.94 16 28 C -0.03 -0.42 8.46 23.01 0.19 -0.22 16 29 C 0.10 2.51 5.59 86.85 0.49 3.00 16 30 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.37 15.86 5.53 -92.70 -0.51 15.34 16 32 H 0.01 0.58 7.46 -2.39 -0.02 0.56 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.09 0.73 8.04 -2.39 -0.02 0.71 16 37 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.53 6.74 -2.39 -0.02 0.52 16 39 H 0.10 0.51 6.74 -2.39 -0.02 0.50 16 40 H 0.16 4.04 7.64 -2.91 -0.02 4.01 16 41 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 43 H 0.17 -0.29 8.06 -2.91 -0.02 -0.31 16 44 H 0.17 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.21 1.28 2.85 -5.36 -0.02 1.27 16 46 H 0.05 1.65 7.91 -2.39 -0.02 1.63 16 47 H 0.07 1.74 8.00 -2.39 -0.02 1.72 16 Total: -1.00 -86.58 380.00 1.84 -84.74 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.42 Total: 17.93 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.80 Total: 2.34 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -6.22 Total: -131.02 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.07 Total: -21.02 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.03 kcal Total: -86.58 1.84 -84.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570006038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.247 kcal (2) G-P(sol) polarization free energy of solvation -86.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds